Reference frame configuration

Reference frame style configuration
Style of reference frame	FANTOM2 interface image classical style view sequence quality

Summary image configuration
Contents shown in each image	Mouse DNA 98%/100bp hits Mouse DNA lower hits nt 98%/100bp hits nt lower hits FANTOM2 MATRICS DNA 98%/100bp hits FANTOM2 MATRICS DNA lower hits Protein 85%identity/90%length hits Protein 85%identity/0%length hits Protein 70%identity/70%length hits Protein 70%identity/0%length hits Protein 50%identity/50%length hits Protein 40%identity/40%length hits Protein lower hits RefSNP DNA repeat regions tRNA scan CDS predict Estwise (Pfam) Motifs InterPro Motifs SuperFamily higher (E<0.02) hits SuperFamily lower (E>0.02) hits MDS motifs SignalP TMHMM transmembrane prediction Coiled coil prediction Amino Acid low complexity region EST 95%/100bp hits Splicing (Mouse Genome Assembly v3) Sequence Quality Clustering Antisense Non-coding RNA PPI Expression Mapping IPSORT
Width of an image (> 400 pixels)	pixels

Summary image configuration

Contents shown in each image

Mouse DNA 98%/100bp hits
Mouse DNA lower hits
nt 98%/100bp hits
nt lower hits
FANTOM2 MATRICS DNA 98%/100bp hits
FANTOM2 MATRICS DNA lower hits
Protein 85%identity/90%length hits
Protein 85%identity/0%length hits
Protein 70%identity/70%length hits
Protein 70%identity/0%length hits
Protein 50%identity/50%length hits
Protein 40%identity/40%length hits
Protein lower hits
RefSNP
DNA repeat regions
tRNA scan
CDS predict
Estwise (Pfam) Motifs
InterPro Motifs
SuperFamily higher (E<0.02) hits
SuperFamily lower (E>0.02) hits
MDS motifs
SignalP
TMHMM transmembrane prediction
Coiled coil prediction
Amino Acid low complexity region
EST 95%/100bp hits
Splicing (Mouse Genome Assembly v3)
Sequence Quality
Clustering
Antisense
Non-coding RNA
PPI
Expression
Mapping
IPSORT

Width of an image (> 400 pixels)

pixels

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RIKEN (The Institute of Physical and Chemical Research) / NTT Software Corporation.