FANTOM3 SSAHA search page
Paste your DNA sequence(s) here in FASTA format.
example
SSAHA OPTIONS
Only display matches containing at least
1
14
28
42
56
70
140
matching bases.
Matches may contain
0
14
21
35
42
gap between successive words.
Matches may contain
1
2
3
4
5
6
7
8
9
10
11
12
13
insertions/deletions between successive words.
Scan query for tandem repeating motifs of up to
1
2
3
4
5
6
7
8
9
10
11
12
13
14
in length.
Ignore words that occur more than
1
500
1000
2000
5000
10000
50000
100000
more often than expected.
FANTOM DB
SSAHA Home Page
itoshi@gsc.riken.go.jp