Human (hg18) genome viewer for THP-1 analysis [Release 2009/03/02]

Showing 10 kbp from chr22, positions 16,509,739 to 16,519,738

Instructions  Instructions Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position. Examples: chr1, chr2, chr3, chr4, chr5, chr6, chr7, chr8, chr9, chr10, chr11, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr19, chr20, chr21, chr22, chrM, chrX, chrY, chr22:16507989..16517988, SPI1, TU:4950, hsa-mir-30c, EntrezGene 6688.

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Landmark or Region:	Reports & Analysis: Download Decorated FASTA File Download GFF File Highlight Selected Properties
Data Source DAS source (hg18 CAGE Tag Cluster) DAS source (hg18 CAGE TSS Riken1 0h f) DAS source (hg18 CAGE TSS Riken1 0h r) DAS source (hg18 CAGE TSS Riken1 12h f) DAS source (hg18 CAGE TSS Riken1 12h r) DAS source (hg18 CAGE TSS Riken1 1h f) DAS source (hg18 CAGE TSS Riken1 1h r) DAS source (hg18 CAGE TSS Riken1 24h f) DAS source (hg18 CAGE TSS Riken1 24h r) DAS source (hg18 CAGE TSS Riken1 4h f) DAS source (hg18 CAGE TSS Riken1 4h r) DAS source (hg18 CAGE TSS Riken1 96h f) DAS source (hg18 CAGE TSS Riken1 96h r) DAS source (hg18 CAGE TSS Riken3 0h f) DAS source (hg18 CAGE TSS Riken3 0h r) DAS source (hg18 CAGE TSS Riken3 12h f) DAS source (hg18 CAGE TSS Riken3 12h r) DAS source (hg18 CAGE TSS Riken3 1h f) DAS source (hg18 CAGE TSS Riken3 1h r) DAS source (hg18 CAGE TSS Riken3 24h f) DAS source (hg18 CAGE TSS Riken3 24h r) DAS source (hg18 CAGE TSS Riken3 4h f) DAS source (hg18 CAGE TSS Riken3 4h r) DAS source (hg18 CAGE TSS Riken3 96h f) DAS source (hg18 CAGE TSS Riken3 96h r) DAS source (hg18 CAGE TSS Riken6 0h f) DAS source (hg18 CAGE TSS Riken6 0h r) DAS source (hg18 CAGE TSS Riken6 12h f) DAS source (hg18 CAGE TSS Riken6 12h r) DAS source (hg18 CAGE TSS Riken6 1h f) DAS source (hg18 CAGE TSS Riken6 1h r) DAS source (hg18 CAGE TSS Riken6 24h f) DAS source (hg18 CAGE TSS Riken6 24h r) DAS source (hg18 CAGE TSS Riken6 4h f) DAS source (hg18 CAGE TSS Riken6 4h r) DAS source (hg18 CAGE TSS Riken6 96h f) DAS source (hg18 CAGE TSS Riken6 96h r) DAS source (hg18 H3K9 Whole Tiling Array 0h 1st) DAS source (hg18 H3K9 Whole Tiling Array 0h 2nd) DAS source (hg18 H3K9 Whole Tiling Array 96h 1st) DAS source (hg18 H3K9 Whole Tiling Array 96h 2nd) DAS source (hg18 Illumina all experiments) DAS source (hg18 Illumina Biological Replicates) DAS source (hg18 Illumina siRNA KD series 1) DAS source (hg18 Illumina siRNA KD series234) DAS source (hg18 Pol II whole tiling array 0h) DAS source (hg18 Pol II whole tiling array 96h) DAS source (hg18 Promoter CAGE) DAS source (hg18 Promoter region CAGE ) DAS source (hg18 PU1 promoter array 0h 1st) DAS source (hg18 PU1 promoter array 0h 2nd) DAS source (hg18 PU1 promoter array 96h 1st) DAS source (hg18 PU1 promoter array 96h 2nd) DAS source (hg18 qRT-PCR) DAS source (hg18 shortRNA cluster - timecourse) DAS source (hg18 shortRNA mapping) DAS source (hg18 SP1 promoter array 0h 1st) DAS source (hg18 SP1 promoter array 0h 2nd) DAS source (hg18 SP1 promoter array 96h 1st) DAS source (hg18 SP1 promoter array 96h 2nd) DAS source (mm9 Repeat masker) DAS source (mm9 Simple repeat) DAS source (mm9 Tag cluster) for DAS source (hg18 CpG) for DAS source (hg18 Gap) for DAS source (hg18 Promoter Probe Pol II) for DAS source (hg18 Promoter Probe) for DAS source (hg18 Promoter Probe) for DAS source (hg18 Repeat Masker) for DAS source (hg18 Simple Repeat) Human (hg18) genome viewer for THP-1 analysis [Release 2009/03/02] Human (hg18) genome viewer for THP-1 analysis [Release 2009/03/02] Mouse (mm9) genome viewer [Release 2009/03/25] S. cerevisiae chromosome I	Scroll/Zoom:    Show 500 kbp Show 200 kbp Show 100 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 200 bp Show 100 bp Show 50 bp    Flip

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 Overview

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 Details

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 Tracks

 Tracks

 Overview

 Overview

 All on All off

Centromere

 A ) Gene

 A ) Gene

 All on All off

A01. Transcripts	A03. snoRNA	A05. EST	A07. Entrez Gene / transcript boundary
A02. miRNA	A04. TU	A06. tRNA	A08. LiftOver TC from hg17

 B ) Expression with cooltips

 B ) Expression with cooltips

 All on All off

B01. Promoter (CAGE level2) Apr 2008	B03. Illumina all experiments	B05. TF qRT-PCR PMA 1st & 2nd
B02. Promoter region (CAGE level3) Apr 2008	B04. Fantom3/Fantom4 TC	B06. shortRNA Cluster

 C ) TSS (CAGE cluster level1)

 C ) TSS (CAGE cluster level1)

 All on All off

C11_F. CAGE level1 RIKEN1 0h Forward	C15_R. CAGE level1 RIKEN1 24h Reverse	C24_F. CAGE level1 RIKEN3 12h Forward	C32_R. CAGE level1 RIKEN6 1h Reverse
C11_R. CAGE level1 RIKEN1 0h Reverse	C16_F. CAGE level1 RIKEN1 96h Forward	C24_R. CAGE level1 RIKEN3 12h Reverse	C33_F. CAGE level1 RIKEN6 4h Forward
C12_F. CAGE level1 RIKEN1 1h Forward	C16_R. CAGE level1 RIKEN1 96h Reverse	C25_F. CAGE level1 RIKEN3 24h Forward	C33_R. CAGE level1 RIKEN6 4h Reverse
C12_R. CAGE level1 RIKEN1 1h Reverse	C21_F. CAGE level1 RIKEN3 0h Forward	C25_R. CAGE level1 RIKEN3 24h Reverse	C34_F. CAGE level1 RIKEN6 12h Forward
C13_F. CAGE level1 RIKEN1 4h Forward	C21_R. CAGE level1 RIKEN3 0h Reverse	C26_F. CAGE level1 RIKEN3 96h Forward	C34_R. CAGE level1 RIKEN6 12h Reverse
C13_R. CAGE level1 RIKEN1 4h Reverse	C22_F. CAGE level1 RIKEN3 1h Forward	C26_R. CAGE level1 RIKEN3 96h Reverse	C35_F. CAGE level1 RIKEN6 24h Forward
C14_F. CAGE level1 RIKEN1 12h Forward	C22_R. CAGE level1 RIKEN3 1h Reverse	C31_F. CAGE level1 RIKEN6 0h Forward	C35_R. CAGE level1 RIKEN6 24h Reverse
C14_R. CAGE level1 RIKEN1 12h Reverse	C23_F. CAGE level1 RIKEN3 4h Forward	C31_R. CAGE level1 RIKEN6 0h Reverse	C36_F. CAGE level1 RIKEN6 96h Forward
C15_F. CAGE level1 RIKEN1 24h Forward	C23_R. CAGE level1 RIKEN3 4h Reverse	C32_F. CAGE level1 RIKEN6 1h Forward	C36_R. CAGE level1 RIKEN6 96h Reverse

 D ) ChIP/Chip

 D ) ChIP/Chip

 All on All off

D01. H3K9 by Whole Tiling Array PMA0h (1st)	D07. PU.1 Promoter Array PMA0h (1st)	D13. SP1 Promoter Array PMA0h (1st)	D19. Pol II by Whole Tiling Array PMA0h (1st)
D02. H3K9 by Whole Tiling Array PMA96h (1st)	D08. PU.1 Promoter Array PMA96h (1st)	D14. SP1 Promoter Array PMA96h (1st)	D20. Pol II by Whole Tiling Array PMA96h (1st)
D04. H3K9 by Whole Tiling Array PMA0h (2nd)	D10. PU.1 Promoter Array PMA0h (2nd)	D16. SP1 Promoter Array PMA0h (2nd)	D21. EGR1 promoter array PMA1h (1st)
D05. H3K9 by Whole Tiling Array PMA96h (2nd)	D11. PU.1 Promoter Array PMA96h (2nd)	D17. SP1 Promoter Array PMA96h (2nd)	D22. EGR1 promoter array PMA1h (2nd)

 F ) ShortRNA sequence mapping

 F ) ShortRNA sequence mapping

 All on All off

F11. ShortRNA libraries s06s08

 Z ) Others

 Z ) Others

 All on All off

Z1. Gene prediction	Z3. DNA/GC Content	Z5. Array CGH for THP1
Z2. Conserved Region (axtNet v.s Mm8)	Z4. TFBS MotEvo cage

 External Annotation Tracks

 External Annotation Tracks

 All on All off

CpG Island	Promoter Array Probe	Simple Repeat	Whole Tiling Array Probe ( Pol II )
Gap	Repeat Masker	Whole Tiling Array Probe ( H3K9 )

 Display Settings

 Display Settings

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 Add your own tracks

 Add your own tracks

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Generic genome browser version 1.68