Extract Name	Comment [rna_tube]	Comment [sample_name]	Comment [organism]	Protocol REF	Parameter [rna_extraction]	Extract Name	Comment [rna_id]	Comment [Material Type]	Comment [ratio 260/280]	Comment [ratio 260/230]	Comment [concentration]	Comment [RNA integrity number]	Protocol REF	Comment [lsid]	Parameter [library_protocol]	Library Name	Comment [library_id]	Protocol REF	Parameter [sequence_protocol]	Parameter [machine_name]	Parameter [run_name]	Parameter [flowcell.channel]	File Name	Comment [sequence_raw_file]	Protocol REF	Parameter [sex]	File Name
10216-103G9	10216-103G9	chicken embryo whole body, day01 (HH7 1-3 somites)	Gallus gallus	standard whole cell	standard whole cell	10216-103G9.rna	10216-103G9.rna	total RNA	2.01,2.02,1.98	1,1,1.02	49.26,48.79,47.63	-	OP-HELISCOPE-CAGE-v4.0	1138	OP-HELISCOPE-CAGE-v4.0	CNhs13976	CNhs13976	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc1.ch11	/sequencedata/heliscope/srf/2012_2_10_GOS039	/sequencedata/heliscope/srf/2012_2_10_GOS039	delve_align	UNDEFINED_SEX_TYPE	chicken%20embryo%20whole%20body%2c%20day01%20%28HH7%201-3%20somites%29.CNhs13976.10216-103G9.galGal5.nobarcode.bam
10218-103H2	10218-103H2	chicken embryo whole body, day01.5 (HH10)	Gallus gallus	standard whole cell	standard whole cell	10218-103H2.rna	10218-103H2.rna	total RNA	2.09,2.01,2.02	1.49,1.5,1.49	51.52,52.23,52.36	-	OP-HELISCOPE-CAGE-v4.0	1138	OP-HELISCOPE-CAGE-v4.0	CNhs13977	CNhs13977	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc1.ch08	/sequencedata/heliscope/srf/2012_2_10_GOS039	/sequencedata/heliscope/srf/2012_2_10_GOS039	delve_align	UNDEFINED_SEX_TYPE	chicken%20embryo%20whole%20body%2c%20day01%2e5%20%28HH10%29.CNhs13977.10218-103H2.galGal5.nobarcode.bam
10220-103H4	10220-103H4	chicken embryo whole body, day02 (HH13)	Gallus gallus	standard whole cell	standard whole cell	10220-103H4.rna	10220-103H4.rna	total RNA	2.02,2.01,2.06	1.47,1.46,1.47	58.46,57.6,57.79	-	OP-HELISCOPE-CAGE-v4.0	1138	OP-HELISCOPE-CAGE-v4.0	CNhs13978	CNhs13978	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc1.ch05	/sequencedata/heliscope/srf/2012_2_10_GOS039	/sequencedata/heliscope/srf/2012_2_10_GOS039	delve_align	UNDEFINED_SEX_TYPE	chicken%20embryo%20whole%20body%2c%20day02%20%28HH13%29.CNhs13978.10220-103H4.galGal5.nobarcode.bam
10222-103H6	10222-103H6	chicken embryo whole body, day02.5 (HH17)	Gallus gallus	standard whole cell	standard whole cell	10222-103H6.rna	10222-103H6.rna	total RNA	2,2.09,2.03	1.79,1.76,1.79	61.86,61.32,61.43	-	OP-HELISCOPE-CAGE-v4.0	1138	OP-HELISCOPE-CAGE-v4.0	CNhs13979	CNhs13979	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc1.ch02	/sequencedata/heliscope/srf/2012_2_10_GOS039	/sequencedata/heliscope/srf/2012_2_10_GOS039	delve_align	UNDEFINED_SEX_TYPE	chicken%20embryo%20whole%20body%2c%20day02%2e5%20%28HH17%29.CNhs13979.10222-103H6.galGal5.nobarcode.bam
10224-103H8	10224-103H8	chicken embryo whole body, day03 (HH20)	Gallus gallus	standard whole cell	standard whole cell	10224-103H8.rna	10224-103H8.rna	total RNA	2.07,2.09,2.07	1.99,1.97,1.94	41.44,42.28,42.41	-	OP-HELISCOPE-CAGE-v4.0	1138	OP-HELISCOPE-CAGE-v4.0	CNhs13980	CNhs13980	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc1.ch24	/sequencedata/heliscope/srf/2012_2_10_GOS039	/sequencedata/heliscope/srf/2012_2_10_GOS039	delve_align	UNDEFINED_SEX_TYPE	chicken%20embryo%20whole%20body%2c%20day03%20%28HH20%29.CNhs13980.10224-103H8.galGal5.nobarcode.bam
10226-103I1	10226-103I1	chicken embryo whole body, day05 (HH26-27)	Gallus gallus	standard whole cell	standard whole cell	10226-103I1.rna	10226-103I1.rna	total RNA	2.11,2.1,2.21	1.64,1.59,1.57	43.98,44.63,44.92	-	OP-HELISCOPE-CAGE-v4.0	1138	OP-HELISCOPE-CAGE-v4.0	CNhs13981	CNhs13981	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc1.ch21	/sequencedata/heliscope/srf/2012_2_10_GOS039	/sequencedata/heliscope/srf/2012_2_10_GOS039	delve_align	UNDEFINED_SEX_TYPE	chicken%20embryo%20whole%20body%2c%20day05%20%28HH26-27%29.CNhs13981.10226-103I1.galGal5.nobarcode.bam 
10004-101A9	10004-101A9	chicken embryo whole body, day10 (HH37)	Gallus gallus			10004-101A9.rna	10004-101A9.rna		1.77,1.83,1.83	1.82,1.8,1.82	75.58,75.59,75.97	9.6	OP-HELISCOPE-CAGE-v3.12	647	OP-HELISCOPE-CAGE-v3.12	CNhs10485	CNhs10485	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc1.ch07	/sequencedata/heliscope/srf/2010_07_15_R2_30Q_1100FOV/	/sequencedata/heliscope/srf/2010_07_15_R2_30Q_1100FOV/	delve_align	unknown_sex_type	chicken%20embryo%20whole%20body%2c%20day10%20%28HH37%29.CNhs10485.10004-101A9.galGal5.nobarcode.bam
10210-103G3	10210-103G3	chicken embryo whole body, 01hr30min (HH1)	Gallus gallus	standard whole cell	standard whole cell	10210-103G3.rna	10210-103G3.rna	total RNA	1.99,1.82,1.78	1.26,1.27,1.29	44.3,43.99,44.79	8.4	OP-HELISCOPE-CAGE-v3.12	960	OP-HELISCOPE-CAGE-v3.12	CNhs12735	CNhs12735	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc1.ch20	/sequencedata/heliscope/srf/2011_04_06_R2_30Q_1100FOV	/sequencedata/heliscope/srf/2011_04_06_R2_30Q_1100FOV	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%2001hr30min%20%28HH1%29.CNhs12735.10210-103G3.galGal5.nobarcode.bam
10215-103G8	10215-103G8	chicken embryo whole body, 22hr (HH5-6)	Gallus gallus	standard whole cell	standard whole cell	10215-103G8.rna	10215-103G8.rna	total RNA	1.8,1.76,1.79	0.65,0.65,0.65	40.73,40.41,40.27	9.2	OP-HELISCOPE-CAGE-v3.12	960	OP-HELISCOPE-CAGE-v3.12	CNhs12736	CNhs12736	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc1.ch17	/sequencedata/heliscope/srf/2011_04_06_R2_30Q_1100FOV	/sequencedata/heliscope/srf/2011_04_06_R2_30Q_1100FOV	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%2022hr%20%28HH5-6%29.CNhs12736.10215-103G8.galGal5.nobarcode.bam
10211-103G4	10211-103G4	chicken embryo whole body, 05hr30min (HH1)	Gallus gallus	standard whole cell	standard whole cell	10211-103G4.rna	10211-103G4.rna	total RNA	2.18,2.08,1.97	1.27,1.33,1.3	59.49,53.96,51.19	-	OP-HELISCOPE-CAGE-v4.0	999	OP-HELISCOPE-CAGE-v4.0	CNhs13027	CNhs13027	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch01	/sequencedata/heliscope/srf/2011_04_28_R4_30Q_1100FOV	/sequencedata/heliscope/srf/2011_04_28_R4_30Q_1100FOV	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%2005hr30min%20%28HH1%29.CNhs13027.10211-103G4.galGal5.nobarcode.bam
10212-103G5	10212-103G5	chicken embryo whole body, 06hr (HH1-2)	Gallus gallus	standard whole cell	standard whole cell	10212-103G5.rna	10212-103G5.rna	total RNA	2.03,2.05,2.02	1.11,1.14,1.14	56.6,53.92,51.05	-	OP-HELISCOPE-CAGE-v4.0	999	OP-HELISCOPE-CAGE-v4.0	CNhs13028	CNhs13028	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch23	/sequencedata/heliscope/srf/2011_04_28_R4_30Q_1100FOV	/sequencedata/heliscope/srf/2011_04_28_R4_30Q_1100FOV	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%2006hr%20%28HH1-2%29.CNhs13028.10212-103G5.galGal5.nobarcode.bam
10213-103G6	10213-103G6	chicken embryo whole body, 14hr (HH3)	Gallus gallus	standard whole cell	standard whole cell	10213-103G6.rna	10213-103G6.rna	total RNA	2,1.98,2	1.15,1.17,1.13	53.02,50.84,44.46	-	OP-HELISCOPE-CAGE-v4.0	999	OP-HELISCOPE-CAGE-v4.0	CNhs13029	CNhs13029	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch20	/sequencedata/heliscope/srf/2011_04_28_R4_30Q_1100FOV	/sequencedata/heliscope/srf/2011_04_28_R4_30Q_1100FOV	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%2014hr%20%28HH3%29.CNhs13029.10213-103G6.galGal5.nobarcode.bam
10214-103G7	10214-103G7	chicken embryo whole body, 18hr (HH4)	Gallus gallus	standard whole cell	standard whole cell	10214-103G7.rna	10214-103G7.rna	total RNA	2.12,2.18,2.15	1,1,0.98	42.29,41.23,40.62	-	OP-HELISCOPE-CAGE-v4.0	999	OP-HELISCOPE-CAGE-v4.0	CNhs13030	CNhs13030	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch17	/sequencedata/heliscope/srf/2011_04_28_R4_30Q_1100FOV	/sequencedata/heliscope/srf/2011_04_28_R4_30Q_1100FOV	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%2018hr%20%28HH4%29.CNhs13030.10214-103G7.galGal5.nobarcode.bam
10217-103H1	10217-103H1	chicken embryo whole body, day01 (HH7 2-3 somites)	Gallus gallus	standard whole cell	standard whole cell	10217-103H1.rna	10217-103H1.rna	total RNA	1.92,1.96,1.92	1.18,1.17,1.17	49.83,50.08,49.89	9.9	OP-HELISCOPE-CAGE-v4.0	1177	OP-HELISCOPE-CAGE-v4.0	CNhs14200	CNhs14200	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch18	/sequencedata/heliscope/srf/2011_12_9_GOS036	/sequencedata/heliscope/srf/2011_12_9_GOS036	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%20day01%20%28HH7%202-3%20somites%29.CNhs14200.10217-103H1.galGal5.nobarcode.bam
10219-103H3	10219-103H3	chicken embryo whole body, day01.5 (HH11-12)	Gallus gallus	standard whole cell	standard whole cell	10219-103H3.rna	10219-103H3.rna	total RNA	2.13,2.05,2.02	1.47,1.45,1.5	31.4,32.32,31.31	10	OP-HELISCOPE-CAGE-v4.0	1177	OP-HELISCOPE-CAGE-v4.0	CNhs14201	CNhs14201	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch15	/sequencedata/heliscope/srf/2011_12_9_GOS036	/sequencedata/heliscope/srf/2011_12_9_GOS036	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%20day01%2e5%20%28HH11-12%29.CNhs14201.10219-103H3.galGal5.nobarcode.bam
10221-103H5	10221-103H5	chicken embryo whole body, day02 (HH14)	Gallus gallus	standard whole cell	standard whole cell	10221-103H5.rna	10221-103H5.rna	total RNA	2.13,2.29,2.12	1.64,0.75,1.6	30.2,38.83,30.49	10	OP-HELISCOPE-CAGE-v4.0	1177	OP-HELISCOPE-CAGE-v4.0	CNhs14202	CNhs14202	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch12	/sequencedata/heliscope/srf/2011_12_9_GOS036	/sequencedata/heliscope/srf/2011_12_9_GOS036	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%20day02%20%28HH14%29.CNhs14202.10221-103H5.galGal5.nobarcode.bam
10223-103H7	10223-103H7	chicken embryo whole body, day03 (HH19)	Gallus gallus	standard whole cell	standard whole cell	10223-103H7.rna	10223-103H7.rna	total RNA	2.06,1.97,1.98	1.95,1.91,1.91	41.33,42.22,41.49	10	OP-HELISCOPE-CAGE-v4.0	1177	OP-HELISCOPE-CAGE-v4.0	CNhs14203	CNhs14203	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch09	/sequencedata/heliscope/srf/2011_12_9_GOS036	/sequencedata/heliscope/srf/2011_12_9_GOS036	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%20day03%20%28HH19%29.CNhs14203.10223-103H7.galGal5.nobarcode.bam
10225-103H9	10225-103H9	chicken embryo whole body, day04 (HH23)	Gallus gallus	standard whole cell	standard whole cell	10225-103H9.rna	10225-103H9.rna	total RNA	2.11,2.18,2.12	1.23,1.23,1.22	38.39,39.48,38.56	10	OP-HELISCOPE-CAGE-v4.0	1177	OP-HELISCOPE-CAGE-v4.0	CNhs14204	CNhs14204	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch06	/sequencedata/heliscope/srf/2011_12_9_GOS036	/sequencedata/heliscope/srf/2011_12_9_GOS036	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%20day04%20%28HH23%29.CNhs14204.10225-103H9.galGal5.nobarcode.bam
10227-103I2	10227-103I2	chicken embryo whole body, day07 (HH32)	Gallus gallus	standard whole cell	standard whole cell	10227-103I2.rna	10227-103I2.rna	total RNA	2.13,2.13,2.05	2.2,2.13,2.09	35.45,35.66,35.62	10	OP-HELISCOPE-CAGE-v4.0	1177	OP-HELISCOPE-CAGE-v4.0	CNhs14205	CNhs14205	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch03	/sequencedata/heliscope/srf/2011_12_9_GOS036	/sequencedata/heliscope/srf/2011_12_9_GOS036	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%20day07%20%28HH32%29.CNhs14205.10227-103I2.galGal5.nobarcode.bam
10228-103I3	10228-103I3	chicken embryo whole body, day15 (HH41)	Gallus gallus	standard whole cell	standard whole cell	10228-103I3.rna	10228-103I3.rna	total RNA	-	-	-	-	OP-HELISCOPE-CAGE-v4.0	1178	OP-HELISCOPE-CAGE-v4.0	CNhs14206	CNhs14206	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch22	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%20day15%20%28HH41%29.CNhs14206.10228-103I3.galGal5.nobarcode.bam
10229-103I4	10229-103I4	chicken embryo whole body, day20 (HH45)	Gallus gallus	standard whole cell	standard whole cell	10229-103I4.rna	10229-103I4.rna	total RNA	-	-	-	-	OP-HELISCOPE-CAGE-v4.0	1178	OP-HELISCOPE-CAGE-v4.0	CNhs14207	CNhs14207	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch19	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%20day20%20%28HH45%29.CNhs14207.10229-103I4.galGal5.nobarcode.bam
10234-103I9	10234-103I9	chicken embryo whole body, day05 (HH25-27)	Gallus gallus	standard whole cell	standard whole cell	10234-103I9.rna	10234-103I9.rna	total RNA	-	-	-	-	OP-HELISCOPE-CAGE-v4.0	1178	OP-HELISCOPE-CAGE-v4.0	CNhs14208	CNhs14208	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch16	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	delve_align	undefined_sex_type	chicken%20embryo%20whole%20body%2c%20day05%20%28HH25-27%29.CNhs14208.10234-103I9.galGal5.nobarcode.bam
10230-103I5	10230-103I5	chicken embryo, extraembryonic tissue, day07 (HH32)	Gallus gallus	standard whole cell	standard whole cell	10230-103I5.rna	10230-103I5.rna	total RNA	-	-	-	-	OP-HELISCOPE-CAGE-v4.0	1178	OP-HELISCOPE-CAGE-v4.0	CNhs14210	CNhs14210	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch10	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	delve_align	undefined_sex_type	chicken%20embryo%2c%20extraembryonic%20tissue%2c%20day07%20%28HH32%29.CNhs14210.10230-103I5.galGal5.nobarcode.bam
10231-103I6	10231-103I6	chicken embryo, extraembryonic tissue, day15 (HH41)	Gallus gallus	standard whole cell	standard whole cell	10231-103I6.rna	10231-103I6.rna	total RNA	-	-	-	-	OP-HELISCOPE-CAGE-v4.0	1178	OP-HELISCOPE-CAGE-v4.0	CNhs14211	CNhs14211	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch07	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	delve_align	undefined_sex_type	chicken%20embryo%2c%20extraembryonic%20tissue%2c%20day15%20%28HH41%29.CNhs14211.10231-103I6.galGal5.nobarcode.bam
10232-103I7	10232-103I7	chicken wing buds, day03 (HH20)	Gallus gallus	standard whole cell	standard whole cell	10232-103I7.rna	10232-103I7.rna	total RNA	-	-	-	-	OP-HELISCOPE-CAGE-v4.0	1178	OP-HELISCOPE-CAGE-v4.0	CNhs14212	CNhs14212	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch04	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	delve_align	undefined_sex_type	chicken%20wing%20buds%2c%20day03%20%28HH20%29.CNhs14212.10232-103I7.galGal5.nobarcode.bam
10233-103I8	10233-103I8	chicken leg buds, day03 (HH20)	Gallus gallus	standard whole cell	standard whole cell	10233-103I8.rna	10233-103I8.rna	total RNA	-	-	-	-	OP-HELISCOPE-CAGE-v4.0	1178	OP-HELISCOPE-CAGE-v4.0	CNhs14213	CNhs14213	OP-HELISCOPE-sequencing-v1.0	OP-HELISCOPE-sequencing-v1.0	NA	NA	fc2.ch01	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	/sequencedata/heliscope/srf/2011_12_31_Riken1FC/	delve_align	undefined_sex_type	chicken%20leg%20buds%2c%20day03%20%28HH20%29.CNhs14213.10233-103I8.galGal5.nobarcode.bam