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CL:0000062

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Name:osteoblast
Namespace:FANTOM
Definition:"A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [MESH:A.11.329.629]
Xrefs:
links:

BTO:0001593

FMA:66780


Ontology association

Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.



link to ontology dataset


data

Parents

is_a:CL:0000055(non-terminally differentiated cell),CL:0002320(connective tissue cell)
develops_from:CL:0007010(preosteoblast)



Children


derives from:FF:0000127 (human osteoblast-Sciencell sample),FF:0000128 (human osteoblast-Cell applications sample)
develops from:CL:0000137 (osteocyte)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens) Mouse (Mus musculus)



Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with CL:0000062 (osteoblast), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
6.65e-72FFCP PHASE2:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366dp5@SP7
6.65e-72FFCP PHASE1:Hg19::chr12:53729525..53729541,-#_9e513db8fb65fc455188ba8a8122366dp5@SP7
6.65e-72FFCP PHASE2:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366dp@chr8:38470503..38470508, +
6.65e-72FFCP PHASE1:Hg19::chr8:38470503..38470508,+#_9e513db8fb65fc455188ba8a8122366d+, p@chr8:38470503..38470508
2.16e-54FFCP PHASE1:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45cp@chr9:116398779..116398800, +
2.16e-54FFCP PHASE1:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45c-, p@chr6:36733547..36733556
2.16e-54FFCP PHASE2:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45cp@chr12:91395963..91395968, -
2.16e-54FFCP PHASE1:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45cp@chr4:88731810..88731821, +
2.16e-54FFCP PHASE2:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45cp34@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45cp1@PANX3
2.16e-54FFCP PHASE2:Hg19::chr11:124481316..124481334,+#_242b889baf56411e877c0dcec225e45cp1@PANX3
2.16e-54FFCP PHASE1:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45cp@chr2:37593656..37593667, +
2.16e-54FFCP PHASE1:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45cp@chr1:199050926..199050944, -
2.16e-54FFCP PHASE1:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392630..62392651, +
2.16e-54FFCP PHASE2:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392583..62392613, +
2.16e-54FFCP PHASE1:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45cp47@RUNX2
2.16e-54FFCP PHASE2:Hg19::chr1:199050926..199050944,-#_242b889baf56411e877c0dcec225e45cp@chr1:199050926..199050944, -
2.16e-54FFCP PHASE2:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45cp4@SP7
2.16e-54FFCP PHASE2:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733583..36733590, -
2.16e-54FFCP PHASE1:Hg19::chr12:53729546..53729565,-#_242b889baf56411e877c0dcec225e45cp4@SP7
2.16e-54FFCP PHASE2:Hg19::chr9:116398779..116398800,+#_242b889baf56411e877c0dcec225e45cp@chr9:116398779..116398800, +
2.16e-54FFCP PHASE2:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45cp52@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr6:45296266..45296277,+#_242b889baf56411e877c0dcec225e45cp34@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45cp@chr6:155427848..155427862, +
2.16e-54FFCP PHASE1:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45cp2@PANX3
2.16e-54FFCP PHASE2:Hg19::chr11:124481361..124481366,+#_242b889baf56411e877c0dcec225e45cp2@PANX3
2.16e-54FFCP PHASE2:Hg19::chr1:62392630..62392651,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392630..62392651, +
2.16e-54FFCP PHASE2:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45cp@chr11:124479851..124479862, -
2.16e-54FFCP PHASE1:Hg19::chr6:36733583..36733590,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733583..36733590, -
2.16e-54FFCP PHASE1:Hg19::chr11:124479851..124479862,-#_242b889baf56411e877c0dcec225e45cp@chr11:124479851..124479862, -
2.16e-54FFCP PHASE1:Hg19::chr6:45296391..45296400,+#_242b889baf56411e877c0dcec225e45cp52@RUNX2
2.16e-54FFCP PHASE1:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45cp@chr11:124482705..124482719, +
2.16e-54FFCP PHASE2:Hg19::chr11:124482705..124482719,+#_242b889baf56411e877c0dcec225e45cp@chr11:124482705..124482719, +
2.16e-54FFCP PHASE2:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45c-, p@chr9:72436290..72436302
2.16e-54FFCP PHASE1:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45cp@chr1:77864109..77864116, +
2.16e-54FFCP PHASE2:Hg19::chr4:88731810..88731821,+#_242b889baf56411e877c0dcec225e45cp@chr4:88731810..88731821, +
2.16e-54FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_242b889baf56411e877c0dcec225e45cp@chr6:155427848..155427862, +
2.16e-54FFCP PHASE1:Hg19::chr9:72436290..72436302,-#_242b889baf56411e877c0dcec225e45cp@chr9:72436290..72436302, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480065..124480072, -
2.16e-54FFCP PHASE2:Hg19::chr11:124480065..124480072,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480065..124480072, -
2.16e-54FFCP PHASE1:Hg19::chr12:91395963..91395968,-#_242b889baf56411e877c0dcec225e45cp@chr12:91395963..91395968, -
2.16e-54FFCP PHASE2:Hg19::chr1:77864109..77864116,+#_242b889baf56411e877c0dcec225e45cp@chr1:77864109..77864116, +
2.16e-54FFCP PHASE2:Hg19::chr2:37593656..37593667,+#_242b889baf56411e877c0dcec225e45cp@chr2:37593656..37593667, +
2.16e-54FFCP PHASE2:Hg19::chr6:36733547..36733556,-#_242b889baf56411e877c0dcec225e45cp@chr6:36733547..36733556, -
2.16e-54FFCP PHASE1:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480073..124480086, -
2.16e-54FFCP PHASE2:Hg19::chr11:124480073..124480086,-#_242b889baf56411e877c0dcec225e45cp@chr11:124480073..124480086, -
2.16e-54FFCP PHASE1:Hg19::chr1:62392583..62392613,+#_242b889baf56411e877c0dcec225e45cp@chr1:62392583..62392613, +
2.16e-54FFCP PHASE2:Hg19::chr6:45295874..45295877,+#_242b889baf56411e877c0dcec225e45cp47@RUNX2
1.03e-43FFCP PHASE2:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473p3@DLX5
1.03e-43FFCP PHASE1:Hg19::chr7:96654015..96654018,-#_9b9dbc897bb6eddeba08dc9624d43473p3@DLX5
4.07e-41FFCP PHASE1:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8p@chr16:53707116..53707125, -
4.07e-41FFCP PHASE1:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8p16@AIG1
4.07e-41FFCP PHASE2:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8p@chr6:36733594..36733607, -
4.07e-41FFCP PHASE1:Hg19::chr6:36733594..36733607,-#_0d095a4c427010ed6a1d608b78b018f8p@chr6:36733594..36733607, -
4.07e-41FFCP PHASE2:Hg19::chr6:143447228..143447237,+#_0d095a4c427010ed6a1d608b78b018f8p16@AIG1
4.07e-41FFCP PHASE2:Hg19::chr16:53707116..53707125,-#_0d095a4c427010ed6a1d608b78b018f8p@chr16:53707116..53707125, -
4.07e-41FFCP PHASE2:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8p@chr12:53721918..53721923, -
4.07e-41FFCP PHASE1:Hg19::chr12:53721918..53721923,-#_0d095a4c427010ed6a1d608b78b018f8p@chr12:53721918..53721923, -
4.67e-41FFCP PHASE1:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101p@chr17:1932231..1932269, +
4.67e-41FFCP PHASE2:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101p@chr4:88732513..88732528, +
4.67e-41FFCP PHASE1:Hg19::chr4:88732513..88732528,+#_ffa899764d3da81b8d4fa68a77a55101p@chr4:88732513..88732528, +
4.67e-41FFCP PHASE2:Hg19::chr17:1932231..1932269,+#_ffa899764d3da81b8d4fa68a77a55101p@chr17:1932231..1932269, +
5.35e-41FFCP PHASE2:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16bp@chr2:53859899..53859908, -
5.35e-41FFCP PHASE1:Hg19::chr2:53859899..53859908,-#_89c022952f8fda90835e7f503950c16bp@chr2:53859899..53859908, -
6.8e-37FFCP PHASE2:Hg19::chr4:16020500..16020547,-#_579d13471e77cd4806a73e1c84d61bdc-, p@chr4:16020500..16020547
6.8e-37FFCP PHASE2:Hg19::chr18:66061928..66061937,-#_579d13471e77cd4806a73e1c84d61bdcp@chr18:66061928..66061937, -
6.8e-37FFCP PHASE1:Hg19::chr9:29942099..29942136,+#_579d13471e77cd4806a73e1c84d61bdcp@chr9:29942099..29942136, +
6.8e-37FFCP PHASE1:Hg19::chr19:28271083..28271089,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28271083..28271089, +
6.8e-37FFCP PHASE2:Hg19::chrX:57930371..57930380,-#_579d13471e77cd4806a73e1c84d61bdcp@chrX:57930371..57930380, -
6.8e-37FFCP PHASE2:Hg19::chr19:28145289..28145296,-#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28145289..28145296, -
6.8e-37FFCP PHASE1:Hg19::chr17:79967254..79967267,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79967254..79967267, +
6.8e-37FFCP PHASE2:Hg19::chr4:188536873..188536891,-#_579d13471e77cd4806a73e1c84d61bdcp@chr4:188536873..188536891, -
6.8e-37FFCP PHASE2:Hg19::chr12:67914694..67914707,+#_579d13471e77cd4806a73e1c84d61bdcp@chr12:67914694..67914707, +
6.8e-37FFCP PHASE2:Hg19::chr8:134021151..134021176,-#_579d13471e77cd4806a73e1c84d61bdcp@chr8:134021151..134021176, -
6.8e-37FFCP PHASE2:Hg19::chr9:29942099..29942136,+#_579d13471e77cd4806a73e1c84d61bdcp@chr9:29942099..29942136, +
6.8e-37FFCP PHASE2:Hg19::chr19:28260754..28260759,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28260754..28260759, +
6.8e-37FFCP PHASE2:Hg19::chr17:79968480..79968490,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79968480..79968490, +
6.8e-37FFCP PHASE1:Hg19::chr7:48078148..48078160,-#_579d13471e77cd4806a73e1c84d61bdcp@chr7:48078148..48078160, -
6.8e-37FFCP PHASE1:Hg19::chr1:52116793..52116805,+#_579d13471e77cd4806a73e1c84d61bdcp@chr1:52116793..52116805, +
6.8e-37FFCP PHASE1:Hg19::chr4:16020500..16020547,-#_579d13471e77cd4806a73e1c84d61bdc-, p@chr4:16020500..16020547
6.8e-37FFCP PHASE1:Hg19::chr17:79965883..79965891,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79965883..79965891, +
6.8e-37FFCP PHASE2:Hg19::chr2:121684363..121684405,+#_579d13471e77cd4806a73e1c84d61bdcp@chr2:121684363..121684405, +
6.8e-37FFCP PHASE2:Hg19::chr17:79965942..79965947,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79965942..79965947, +
6.8e-37FFCP PHASE2:Hg19::chr7:48078148..48078160,-#_579d13471e77cd4806a73e1c84d61bdcp@chr7:48078148..48078160, -
6.8e-37FFCP PHASE1:Hg19::chr1:39992756..39992784,-#_579d13471e77cd4806a73e1c84d61bdcp@chr1:39992756..39992784, -
6.8e-37FFCP PHASE2:Hg19::chr8:104215580..104215589,-#_579d13471e77cd4806a73e1c84d61bdcp1@ENST00000523915
6.8e-37FFCP PHASE2:Hg19::chr11:85416548..85416560,-#_579d13471e77cd4806a73e1c84d61bdcp18@SYTL2
6.8e-37FFCP PHASE1:Hg19::chrX:58052946..58052954,+#_579d13471e77cd4806a73e1c84d61bdcp@chrX:58052946..58052954, +
6.8e-37FFCP PHASE2:Hg19::chrX:58168137..58168144,-#_579d13471e77cd4806a73e1c84d61bdcp@chrX:58168137..58168144, -
6.8e-37FFCP PHASE2:Hg19::chr19:28198123..28198149,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28198123..28198149, +
6.8e-37FFCP PHASE1:Hg19::chr17:79968630..79968635,+#_579d13471e77cd4806a73e1c84d61bdcp@chr17:79968630..79968635, +
6.8e-37FFCP PHASE1:Hg19::chr15:30360803..30360815,-#_579d13471e77cd4806a73e1c84d61bdcp@chr15:30360803..30360815, -
6.8e-37FFCP PHASE1:Hg19::chr19:28248054..28248062,+#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28248054..28248062, +
6.8e-37FFCP PHASE2:Hg19::chr6:81430111..81430117,+#_579d13471e77cd4806a73e1c84d61bdcp@chr6:81430111..81430117, +
6.8e-37FFCP PHASE1:Hg19::chr11:30911556..30911574,+#_579d13471e77cd4806a73e1c84d61bdcp@chr11:30911556..30911574, +
6.8e-37FFCP PHASE1:Hg19::chr8:134104319..134104347,-#_579d13471e77cd4806a73e1c84d61bdcp@chr8:134104319..134104347, -
6.8e-37FFCP PHASE1:Hg19::chr19:28198009..28198037,-#_579d13471e77cd4806a73e1c84d61bdcp@chr19:28198009..28198037, -
6.8e-37FFCP PHASE1:Hg19::chr4:88666648..88666655,-#_579d13471e77cd4806a73e1c84d61bdcp@chr4:88666648..88666655, -
6.8e-37FFCP PHASE2:Hg19::chr11:30911556..30911574,+#_579d13471e77cd4806a73e1c84d61bdcp@chr11:30911556..30911574, +
6.8e-37FFCP PHASE1:Hg19::chr3:55016696..55016715,-#_579d13471e77cd4806a73e1c84d61bdcp@chr3:55016696..55016715, -