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CL:0000138

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Name:chondrocyte
Namespace:FANTOM
Definition:"Polymorphic cell that form cartilage." [MESH:A.11.329.171]
Xrefs:
links:

BTO:0000249

FMA:66782
Synonyms: "cartilage cell" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000153(GAG secreting cell),CL:0000667(collagen secreting cell)
develops_from:CL:0000058(chondroblast)



Children


derives from:FF:0000037 (human chondrocyte sample),FF:0101574 (chondrosarcoma cell line sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000138 (chondrocyte), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.17e-105FFCP PHASE2:Hg19::chr7:150824026..150824027,-#_d3c7454e1ae041283ac7c3c5efe75943p@chr7:150824026..150824027, -
5.17e-105FFCP PHASE1:Hg19::chr7:150824026..150824027,-#_d3c7454e1ae041283ac7c3c5efe75943p@chr7:150824026..150824027, -
4.67e-75FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_20571246e28383207b9f7a8465cae8b0-, p@chr8:57359975..57359992
4.67e-75FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_20571246e28383207b9f7a8465cae8b0p@chr8:57359975..57359992, -
5.66e-75FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_fb23dc840c29f4c4e2def4d3f540c266-, p@chr8:57353982..57353991
5.66e-75FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_fb23dc840c29f4c4e2def4d3f540c266p@chr8:57353982..57353991, -
4.26e-74FFCP PHASE1:Hg19::chr16:66906996..66906997,-#_e5401f07cedf71aba93c2e2613a4e567p@chr16:66906996..66906997, -
4.26e-74FFCP PHASE2:Hg19::chr16:66906996..66906997,-#_e5401f07cedf71aba93c2e2613a4e567p@chr16:66906996..66906997, -
5.47e-74FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_5ae2297b4d230438fca10e2e7d7e83cfp@chr8:57354278..57354286, +
5.47e-74FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_5ae2297b4d230438fca10e2e7d7e83cf+, p@chr8:57354278..57354286
2.83e-66FFCP PHASE1:Hg19::chr21:40033882..40033887,-#_31363fec89dc856eb459c0329d11f0fbp21@ERG
2.83e-66FFCP PHASE2:Hg19::chr8:37535618..37535621,+#_31363fec89dc856eb459c0329d11f0fbp@chr8:37535618..37535621, +
2.83e-66FFCP PHASE2:Hg19::chr12:57628728..57628739,-#_31363fec89dc856eb459c0329d11f0fbp@chr12:57628728..57628739, -
2.83e-66FFCP PHASE2:Hg19::chr21:40033882..40033887,-#_31363fec89dc856eb459c0329d11f0fbp21@ERG
2.83e-66FFCP PHASE1:Hg19::chr12:57628728..57628739,-#_31363fec89dc856eb459c0329d11f0fbp@chr12:57628728..57628739, -
2.83e-66FFCP PHASE1:Hg19::chr8:37535618..37535621,+#_31363fec89dc856eb459c0329d11f0fbp@chr8:37535618..37535621, +
5.13e-66FFCP PHASE2:Hg19::chr15:89402148..89402159,+#_e57afda5837fc721011929b58fd5b76bp6@ACAN
5.13e-66FFCP PHASE1:Hg19::chr15:89402148..89402159,+#_e57afda5837fc721011929b58fd5b76bp6@ACAN
1.63e-59FFCP PHASE1:Hg19::chr15:89417758..89417770,+#_3b0a57fe4a2cf96f1d0d3281e1f525b6p@chr15:89417758..89417770, +
1.63e-59FFCP PHASE2:Hg19::chr15:89417758..89417770,+#_3b0a57fe4a2cf96f1d0d3281e1f525b6p@chr15:89417758..89417770, +
1.63e-59FFCP PHASE2:Hg19::chr12:57629315..57629334,-#_3b0a57fe4a2cf96f1d0d3281e1f525b6p@chr12:57629315..57629334, -
1.63e-59FFCP PHASE1:Hg19::chr12:57629315..57629334,-#_3b0a57fe4a2cf96f1d0d3281e1f525b6p@chr12:57629315..57629334, -
1.82e-59FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_8d7596e081d16dd8623b9cc0a67fd182p@chr8:57354143..57354152, +
1.82e-59FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_8d7596e081d16dd8623b9cc0a67fd182p@chr8:57354143..57354152, +
4.12e-59FFCP PHASE1:Hg19::chr15:89402048..89402061,+#_d2c655b8fb891487c871e9ac9702e494p8@ACAN
4.12e-59FFCP PHASE2:Hg19::chr15:89402048..89402061,+#_d2c655b8fb891487c871e9ac9702e494p8@ACAN
7.47e-59FFCP PHASE1:Hg19::chr1:186277359..186277362,+#_3cd6bb6f3687754a393baad9c05eb343p@chr1:186277359..186277362, +
7.47e-59FFCP PHASE1:Hg19::chr12:54651599..54651610,-#_3cd6bb6f3687754a393baad9c05eb343p40@CBX5
7.47e-59FFCP PHASE2:Hg19::chr1:186277359..186277362,+#_3cd6bb6f3687754a393baad9c05eb343p@chr1:186277359..186277362, +
7.47e-59FFCP PHASE2:Hg19::chr12:54651599..54651610,-#_3cd6bb6f3687754a393baad9c05eb343p40@CBX5
1.01e-58FFCP PHASE1:Hg19::chr1:186273262..186273282,+#_b90ac9c93249e59d43b9bd86686eefd3p@chr1:186273262..186273282, +
1.01e-58FFCP PHASE2:Hg19::chr1:186273262..186273282,+#_b90ac9c93249e59d43b9bd86686eefd3p@chr1:186273262..186273282, +
1.36e-58FFCP PHASE2:Hg19::chr21:39821025..39821046,-#_8b72d094d6bf5cf579d0bf260f13e273p9@ERG
1.36e-58FFCP PHASE1:Hg19::chr21:39821025..39821046,-#_8b72d094d6bf5cf579d0bf260f13e273p9@ERG
1.82e-58FFCP PHASE1:Hg19::chr8:57354262..57354270,+#_837ff2c1e01195f7a27cf2a8dea91578p@chr8:57354262..57354270, +
1.82e-58FFCP PHASE2:Hg19::chr8:57354262..57354270,+#_837ff2c1e01195f7a27cf2a8dea91578p@chr8:57354262..57354270, +
3.54e-53FFCP PHASE1:Hg19::chr8:57353888..57353898,-#_6e3838afe797f7cc14b7a0c7c6ec3006p@chr8:57353888..57353898, -
3.54e-53FFCP PHASE2:Hg19::chr8:57353888..57353898,-#_6e3838afe797f7cc14b7a0c7c6ec3006p@chr8:57353888..57353898, -
3.84e-50FFCP PHASE1:Hg19::chr1:186277186..186277192,+#_3aecd676cc0abc91d5d9b82460b56101p@chr1:186277186..186277192, +
3.84e-50FFCP PHASE2:Hg19::chr1:186277186..186277192,+#_3aecd676cc0abc91d5d9b82460b56101p@chr1:186277186..186277192, +
1.08e-49FFCP PHASE1:Hg19::chr15:89381951..89381962,+#_bfd3454c58989b8245f8c57250abe68ep@chr15:89381951..89381962, +
1.08e-49FFCP PHASE2:Hg19::chr15:89381951..89381962,+#_bfd3454c58989b8245f8c57250abe68ep@chr15:89381951..89381962, +
4.78e-49FFCP PHASE2:Hg19::chr12:57629234..57629249,-#_85b1166027ccaa6ecd182b122ba39054p@chr12:57629234..57629249, -
4.78e-49FFCP PHASE1:Hg19::chr12:57629234..57629249,-#_85b1166027ccaa6ecd182b122ba39054p@chr12:57629234..57629249, -
5.83e-49FFCP PHASE2:Hg19::chr1:203149716..203149729,-#_eb79300e864dbc19a178a2c61c3e22adp19@CHI3L1
5.83e-49FFCP PHASE1:Hg19::chr1:203149716..203149729,-#_eb79300e864dbc19a178a2c61c3e22adp19@CHI3L1
3.67e-47FFCP PHASE1:Hg19::chr6:112375516..112375536,+#_378d02b4b0f32bc3eb0ea9d222bdde90p2@WISP3
3.67e-47FFCP PHASE2:Hg19::chr6:112375516..112375536,+#_378d02b4b0f32bc3eb0ea9d222bdde90p2@WISP3
1.41e-45FFCP PHASE2:Hg19::chr1:203154508..203154518,-#_e0d5a3f2302cd98a59e59c8fe9dc5b33p20@CHI3L1
1.41e-45FFCP PHASE1:Hg19::chr1:203154508..203154518,-#_e0d5a3f2302cd98a59e59c8fe9dc5b33p20@CHI3L1
9.76e-45FFCP PHASE1:Hg19::chr1:186275455..186275462,+#_5d99b55c82d93d55040bcb29be810c5bp@chr1:186275455..186275462, +
9.76e-45FFCP PHASE2:Hg19::chr1:186275455..186275462,+#_5d99b55c82d93d55040bcb29be810c5b+, p@chr1:186275455..186275462
9.76e-45FFCP PHASE2:Hg19::chr7:45953092..45953099,+#_5d99b55c82d93d55040bcb29be810c5bp@chr7:45953092..45953099, +
9.76e-45FFCP PHASE1:Hg19::chr7:45953092..45953099,+#_5d99b55c82d93d55040bcb29be810c5bp@chr7:45953092..45953099, +
1.52e-44FFCP PHASE2:Hg19::chr16:69963162..69963192,+#_8915387aff8756b4b0bbd8626956daeep@chr16:69963162..69963192, +
1.52e-44FFCP PHASE1:Hg19::chr17:40998201..40998206,+#_8915387aff8756b4b0bbd8626956daeep@chr17:40998201..40998206, +
1.52e-44FFCP PHASE1:Hg19::chr1:186266030..186266037,+#_8915387aff8756b4b0bbd8626956daeep6@PRG4
1.52e-44FFCP PHASE2:Hg19::chr1:186266030..186266037,+#_8915387aff8756b4b0bbd8626956daeep6@PRG4
1.52e-44FFCP PHASE2:Hg19::chr9:97563078..97563086,+#_8915387aff8756b4b0bbd8626956daeep@chr9:97563078..97563086, +
1.52e-44FFCP PHASE1:Hg19::chr16:69963162..69963192,+#_8915387aff8756b4b0bbd8626956daeep@chr16:69963162..69963192, +
1.52e-44FFCP PHASE2:Hg19::chr17:40998185..40998200,+#_8915387aff8756b4b0bbd8626956daeep@chr17:40998185..40998200, +
1.52e-44FFCP PHASE1:Hg19::chr9:97563078..97563086,+#_8915387aff8756b4b0bbd8626956daeep@chr9:97563078..97563086, +
1.52e-44FFCP PHASE2:Hg19::chr17:40998201..40998206,+#_8915387aff8756b4b0bbd8626956daeep@chr17:40998201..40998206, +
1.52e-44FFCP PHASE1:Hg19::chr17:40998185..40998200,+#_8915387aff8756b4b0bbd8626956daeep@chr17:40998185..40998200, +
7.53e-44FFCP PHASE1:Hg19::chr1:203149741..203149762,-#_b7a3459c22d1a8eb664a043aadd486c0p14@CHI3L1
7.53e-44FFCP PHASE2:Hg19::chr1:203149741..203149762,-#_b7a3459c22d1a8eb664a043aadd486c0p14@CHI3L1
3.16e-43FFCP PHASE1:Hg19::chr15:89401833..89401842,+#_5a9687fcb1d62c36e245e0b8d57400cbp10@ACAN
3.16e-43FFCP PHASE2:Hg19::chr15:89401833..89401842,+#_5a9687fcb1d62c36e245e0b8d57400cbp10@ACAN
3.65e-43FFCP PHASE2:Hg19::chr7:45956964..45956971,+#_beac24c719a3f25e8abc0964c284aa48p@chr7:45956964..45956971, +
3.65e-43FFCP PHASE1:Hg19::chrX:7077601..7077607,+#_beac24c719a3f25e8abc0964c284aa48p17@STS
3.65e-43FFCP PHASE1:Hg19::chr7:45956964..45956971,+#_beac24c719a3f25e8abc0964c284aa48p@chr7:45956964..45956971, +
3.65e-43FFCP PHASE2:Hg19::chrX:7077601..7077607,+#_beac24c719a3f25e8abc0964c284aa48p17@STS
6.48e-43FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_f0d153d048c48459d8a2b3604ff70b72p@chr8:57354360..57354367, +
6.48e-43FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_f0d153d048c48459d8a2b3604ff70b72+, p@chr8:57354360..57354367
8.63e-43FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_11ec81d02df34f4aba08bb9904eef7dbp@chr8:57353804..57353821, -
8.63e-43FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_11ec81d02df34f4aba08bb9904eef7dbp@chr8:57353804..57353821, -
1.03e-41FFCP PHASE2:Hg19::chr1:203152908..203152924,-#_4fa2ef4a59e4d5d8a0a5a025521b7a5ep@chr1:203152908..203152924, -
1.03e-41FFCP PHASE1:Hg19::chr1:203152908..203152924,-#_4fa2ef4a59e4d5d8a0a5a025521b7a5ep@chr1:203152908..203152924, -
7.63e-41FFCP PHASE2:Hg19::chr9:97807545..97807558,+#_9ff16c7ab72d2b5f050a849397c55b13p@chr9:97807545..97807558, +
7.63e-41FFCP PHASE1:Hg19::chr9:97807545..97807558,+#_9ff16c7ab72d2b5f050a849397c55b13p@chr9:97807545..97807558, +
1.04e-40FFCP PHASE1:Hg19::chr8:57353745..57353754,-#_2a90dccc29b619a8ffee9bf0846de88dp@chr8:57353745..57353754, -
1.04e-40FFCP PHASE2:Hg19::chr8:57353745..57353754,-#_2a90dccc29b619a8ffee9bf0846de88dp@chr8:57353745..57353754, -
1.57e-40FFCP PHASE2:Hg19::chr1:203151964..203151973,-#_bb9142a009dea3bfc16497032b7ebbeap21@CHI3L1
1.57e-40FFCP PHASE1:Hg19::chr1:203151964..203151973,-#_bb9142a009dea3bfc16497032b7ebbeap21@CHI3L1
1.82e-39FFCP PHASE2:Hg19::chr1:203148919..203148937,-#_a0516bfa713d5946da68920f1645c176p16@CHI3L1
1.82e-39FFCP PHASE1:Hg19::chr1:203148919..203148937,-#_a0516bfa713d5946da68920f1645c176p16@CHI3L1
7.29e-39FFCP PHASE1:Hg19::chr7:45956988..45956995,+#_6c08d91e3f7246d0e4031fed0889063ep@chr7:45956988..45956995, +
7.29e-39FFCP PHASE2:Hg19::chr7:45956988..45956995,+#_6c08d91e3f7246d0e4031fed0889063ep@chr7:45956988..45956995, +
9.74e-39FFCP PHASE1:Hg19::chr7:45953320..45953329,+#_20ec2ec30e83887604742863732e2fa5p@chr7:45953320..45953329, +
9.74e-39FFCP PHASE2:Hg19::chr7:45953320..45953329,+#_20ec2ec30e83887604742863732e2fa5p@chr7:45953320..45953329, +
1.3e-38FFCP PHASE2:Hg19::chr3:176912032..176912061,-#_34988340a883bb4d9144985447fa9788p1@BC070375
1.3e-38FFCP PHASE1:Hg19::chr3:176912032..176912061,-#_34988340a883bb4d9144985447fa9788p1@BC070375
2.18e-38FFCP PHASE2:Hg19::chr21:40033695..40033712,-#_20513a8bbe703a63be4b854e7b3e1a4dp6@ERG
2.18e-38FFCP PHASE1:Hg19::chr21:40033695..40033712,-#_20513a8bbe703a63be4b854e7b3e1a4dp6@ERG
5.47e-38FFCP PHASE1:Hg19::chr8:57354275..57354292,-#_fea133fbb35a051a1b580c1baeed5ce9-, p@chr8:57354275..57354292
5.47e-38FFCP PHASE2:Hg19::chr8:57354275..57354292,-#_fea133fbb35a051a1b580c1baeed5ce9p@chr8:57354275..57354292, -
6.3e-38FFCP PHASE1:Hg19::chr1:186276499..186276506,+#_9290df1fb57a36382ca26ca1aa62e8f3p@chr1:186276499..186276506, +
6.3e-38FFCP PHASE2:Hg19::chr1:186276499..186276506,+#_9290df1fb57a36382ca26ca1aa62e8f3p@chr1:186276499..186276506, +
8.66e-38FFCP PHASE2:Hg19::chr1:203148495..203148505,-#_6c835623c9ee2d45e99ea3545a1da9a9p13@CHI3L1
8.66e-38FFCP PHASE1:Hg19::chr1:203148495..203148505,-#_6c835623c9ee2d45e99ea3545a1da9a9p13@CHI3L1