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CL:0000147

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Name:pigment cell
Namespace:FANTOM
Definition:"A pigment cell is a cell that contains pigment granules." [GOC:tfm]
Synonyms: "chromatocyte" EXACT []
"chromatophore" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000325(stuff accumulating cell)



Children


is a:CL:0000148 (melanocyte),CL:0000149 (visual pigment cell),CL:0000342 (pigment cell (sensu Vertebrata))

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000147 (pigment cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.97e-100FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_8725e7a9cac0b8ac1b69baa83e236e25p2@SLC45A2
5.97e-100FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_8725e7a9cac0b8ac1b69baa83e236e25p2@SLC45A2
1.79e-99FFCP PHASE2:Hg19::chrX:9707625..9707629,-#_50a12325e94f4044b49d26974d288dbap6@GPR143
1.79e-99FFCP PHASE1:Hg19::chrX:9707625..9707629,-#_50a12325e94f4044b49d26974d288dbap6@GPR143
2.98e-99FFCP PHASE1:Hg19::chr12:56349406..56349415,-#_3eb58874d1d1006e901fa538d2dd26b7p@chr12:56349406..56349415, -
2.98e-99FFCP PHASE2:Hg19::chr12:56349406..56349415,-#_3eb58874d1d1006e901fa538d2dd26b7p@chr12:56349406..56349415, -
4.6e-98FFCP PHASE2:Hg19::chr19:3557867..3557877,-#_ba05e893c4740751c73850e6632a0ab1p7@MFSD12
4.6e-98FFCP PHASE1:Hg19::chr9:12693291..12693298,+#_ba05e893c4740751c73850e6632a0ab1p33@TYRP1
4.6e-98FFCP PHASE1:Hg19::chr6:4610902..4610913,+#_ba05e893c4740751c73850e6632a0ab1p1@ENST00000380106
4.6e-98FFCP PHASE2:Hg19::chr9:12693291..12693298,+#_ba05e893c4740751c73850e6632a0ab1p33@TYRP1
4.6e-98FFCP PHASE2:Hg19::chr9:12708060..12708071,-#_ba05e893c4740751c73850e6632a0ab1p@chr9:12708060..12708071, -
4.6e-98FFCP PHASE1:Hg19::chr9:12695585..12695593,+#_ba05e893c4740751c73850e6632a0ab1p24@TYRP1
4.6e-98FFCP PHASE2:Hg19::chr6:4610902..4610913,+#_ba05e893c4740751c73850e6632a0ab1p1@ENST00000380106
4.6e-98FFCP PHASE1:Hg19::chr1:1497497..1497523,-#_ba05e893c4740751c73850e6632a0ab1p1@AK129493
4.6e-98FFCP PHASE2:Hg19::chr9:12695585..12695593,+#_ba05e893c4740751c73850e6632a0ab1p24@TYRP1
4.6e-98FFCP PHASE1:Hg19::chr9:12708978..12708990,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12708978..12708990, +
4.6e-98FFCP PHASE2:Hg19::chr9:12709332..12709345,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12709332..12709345, +
4.6e-98FFCP PHASE1:Hg19::chr19:3557867..3557877,-#_ba05e893c4740751c73850e6632a0ab1p7@MFSD12
4.6e-98FFCP PHASE1:Hg19::chr9:12702367..12702377,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12702367..12702377, +
4.6e-98FFCP PHASE2:Hg19::chr1:154401791..154401807,+#_ba05e893c4740751c73850e6632a0ab1p11@IL6R
4.6e-98FFCP PHASE1:Hg19::chr16:89986251..89986268,+#_ba05e893c4740751c73850e6632a0ab1p@chr16:89986251..89986268, +
4.6e-98FFCP PHASE2:Hg19::chr9:12702367..12702377,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12702367..12702377, +
4.6e-98FFCP PHASE1:Hg19::chr1:154401791..154401807,+#_ba05e893c4740751c73850e6632a0ab1p11@IL6R
4.6e-98FFCP PHASE2:Hg19::chr1:1497497..1497523,-#_ba05e893c4740751c73850e6632a0ab1p1@AK129493
4.6e-98FFCP PHASE2:Hg19::chr9:12708978..12708990,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12708978..12708990, +
4.6e-98FFCP PHASE1:Hg19::chr9:12709332..12709345,+#_ba05e893c4740751c73850e6632a0ab1p@chr9:12709332..12709345, +
4.6e-98FFCP PHASE1:Hg19::chr9:12708060..12708071,-#_ba05e893c4740751c73850e6632a0ab1p@chr9:12708060..12708071, -
4.6e-98FFCP PHASE2:Hg19::chr16:89986251..89986268,+#_ba05e893c4740751c73850e6632a0ab1p@chr16:89986251..89986268, +
1.93e-94FFCP PHASE1:Hg19::chr12:56351196..56351222,-#_ee46e08c25d7f1ca95f3ef248ceba1bap7@PMEL
1.93e-94FFCP PHASE2:Hg19::chr12:56351196..56351222,-#_ee46e08c25d7f1ca95f3ef248ceba1bap7@PMEL
1.9e-89FFCP PHASE1:Hg19::chr12:56351171..56351183,-#_3c6d9b2d93adb1af87a741fa703b02a8p8@PMEL
1.9e-89FFCP PHASE2:Hg19::chr12:56351171..56351183,-#_3c6d9b2d93adb1af87a741fa703b02a8p8@PMEL
2.14e-89FFCP PHASE1:Hg19::chr12:56351122..56351134,-#_2e13cd0c5a706d4f73c74489efe0b661p9@PMEL
2.14e-89FFCP PHASE2:Hg19::chr12:56351122..56351134,-#_2e13cd0c5a706d4f73c74489efe0b661p9@PMEL
1.08e-87FFCP PHASE2:Hg19::chr5:33984741..33984774,-#_0cfe299660f20db18507d5226252eba5p1@SLC45A2
1.08e-87FFCP PHASE1:Hg19::chr5:33984741..33984774,-#_0cfe299660f20db18507d5226252eba5p1@SLC45A2
6.07e-87FFCP PHASE1:Hg19::chr15:55562582..55562617,-#_7339a7e9f3f6838122df7bbdd5551905p3@RAB27A
6.07e-87FFCP PHASE2:Hg19::chr15:55562582..55562617,-#_7339a7e9f3f6838122df7bbdd5551905p3@RAB27A
5.51e-86FFCP PHASE2:Hg19::chr1:1497528..1497559,-#_5a5694563f9dd4f15368db5f2aa5ca23p2@AK129493
5.51e-86FFCP PHASE2:Hg19::chr19:3557918..3557927,-#_5a5694563f9dd4f15368db5f2aa5ca23p8@MFSD12
5.51e-86FFCP PHASE1:Hg19::chr1:1497528..1497559,-#_5a5694563f9dd4f15368db5f2aa5ca23p2@AK129493
5.51e-86FFCP PHASE1:Hg19::chr19:3557918..3557927,-#_5a5694563f9dd4f15368db5f2aa5ca23p8@MFSD12
6.25e-86FFCP PHASE2:Hg19::chr9:12693559..12693562,+#_4b1235c35d9d83cd6d09128ccbd16703p22@TYRP1
6.25e-86FFCP PHASE2:Hg19::chr5:159894810..159894819,+#_4b1235c35d9d83cd6d09128ccbd16703p12@uc003lyl.3
6.25e-86FFCP PHASE1:Hg19::chr9:12704349..12704362,+#_4b1235c35d9d83cd6d09128ccbd16703p@chr9:12704349..12704362, +
6.25e-86FFCP PHASE2:Hg19::chr9:12704349..12704362,+#_4b1235c35d9d83cd6d09128ccbd16703p@chr9:12704349..12704362, +
6.25e-86FFCP PHASE1:Hg19::chr9:12708011..12708027,+#_4b1235c35d9d83cd6d09128ccbd16703p27@TYRP1
6.25e-86FFCP PHASE1:Hg19::chr9:12701182..12701196,+#_4b1235c35d9d83cd6d09128ccbd16703p19@TYRP1
6.25e-86FFCP PHASE1:Hg19::chr5:159894810..159894819,+#_4b1235c35d9d83cd6d09128ccbd16703p12@uc003lyl.3
6.25e-86FFCP PHASE2:Hg19::chr9:12701182..12701196,+#_4b1235c35d9d83cd6d09128ccbd16703p19@TYRP1
6.25e-86FFCP PHASE1:Hg19::chr9:12693559..12693562,+#_4b1235c35d9d83cd6d09128ccbd16703p22@TYRP1
6.25e-86FFCP PHASE2:Hg19::chr9:12708011..12708027,+#_4b1235c35d9d83cd6d09128ccbd16703p27@TYRP1
7.09e-86FFCP PHASE1:Hg19::chr9:12704539..12704547,+#_55b692cd91ddd7307ed7e5d8d6b37fedp@chr9:12704539..12704547, +
7.09e-86FFCP PHASE2:Hg19::chr9:12704539..12704547,+#_55b692cd91ddd7307ed7e5d8d6b37fedp@chr9:12704539..12704547, +
7.09e-86FFCP PHASE2:Hg19::chr15:28344426..28344431,-#_55b692cd91ddd7307ed7e5d8d6b37fedp2@OCA2
7.09e-86FFCP PHASE1:Hg19::chr15:28344426..28344431,-#_55b692cd91ddd7307ed7e5d8d6b37fedp2@OCA2
8.04e-86FFCP PHASE1:Hg19::chr9:12695674..12695681,+#_dab4db6581a7234e0e8e5b6f86db1faap36@TYRP1
8.04e-86FFCP PHASE2:Hg19::chr9:12695674..12695681,+#_dab4db6581a7234e0e8e5b6f86db1faap36@TYRP1
9.12e-86FFCP PHASE1:Hg19::chr12:56351078..56351092,-#_ba223d47476a208700003a5a623e5309-, p@chr12:56351078..56351092
9.12e-86FFCP PHASE2:Hg19::chr12:56351078..56351092,-#_ba223d47476a208700003a5a623e5309p@chr12:56351078..56351092, -
2.84e-84FFCP PHASE2:Hg19::chr15:28360793..28360804,-#_33227129cbc7d1c50c735408406a4e43p@chr15:28360793..28360804, -
2.84e-84FFCP PHASE1:Hg19::chr15:42694665..42694671,+#_33227129cbc7d1c50c735408406a4e43p16@CAPN3
2.84e-84FFCP PHASE2:Hg19::chr1:212594718..212594723,+#_33227129cbc7d1c50c735408406a4e43p@chr1:212594718..212594723, +
2.84e-84FFCP PHASE2:Hg19::chr17:77925869..77925876,-#_33227129cbc7d1c50c735408406a4e43p@chr17:77925869..77925876, -
2.84e-84FFCP PHASE2:Hg19::chr11:48066945..48066951,+#_33227129cbc7d1c50c735408406a4e43p@chr11:48066945..48066951, +
2.84e-84FFCP PHASE2:Hg19::chr3:69951861..69951868,+#_33227129cbc7d1c50c735408406a4e43p@chr3:69951861..69951868, +
2.84e-84FFCP PHASE2:Hg19::chr15:42694665..42694671,+#_33227129cbc7d1c50c735408406a4e43p16@CAPN3
2.84e-84FFCP PHASE1:Hg19::chr1:212594718..212594723,+#_33227129cbc7d1c50c735408406a4e43p@chr1:212594718..212594723, +
2.84e-84FFCP PHASE1:Hg19::chr17:77925869..77925876,-#_33227129cbc7d1c50c735408406a4e43p@chr17:77925869..77925876, -
2.84e-84FFCP PHASE1:Hg19::chr19:3557800..3557811,-#_33227129cbc7d1c50c735408406a4e43p9@MFSD12
2.84e-84FFCP PHASE2:Hg19::chr6:4610888..4610895,+#_33227129cbc7d1c50c735408406a4e43p2@ENST00000380106
2.84e-84FFCP PHASE2:Hg19::chr15:28360857..28360860,-#_33227129cbc7d1c50c735408406a4e43p@chr15:28360857..28360860, -
2.84e-84FFCP PHASE1:Hg19::chr1:1497446..1497455,-#_33227129cbc7d1c50c735408406a4e43p4@AK129493
2.84e-84FFCP PHASE1:Hg19::chr9:12701691..12701717,+#_33227129cbc7d1c50c735408406a4e43p34@TYRP1
2.84e-84FFCP PHASE2:Hg19::chr1:1497566..1497576,-#_33227129cbc7d1c50c735408406a4e43p3@AK129493
2.84e-84FFCP PHASE1:Hg19::chr11:48066945..48066951,+#_33227129cbc7d1c50c735408406a4e43p@chr11:48066945..48066951, +
2.84e-84FFCP PHASE2:Hg19::chr9:12701691..12701717,+#_33227129cbc7d1c50c735408406a4e43p34@TYRP1
2.84e-84FFCP PHASE2:Hg19::chr9:12709200..12709209,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12709200..12709209, +
2.84e-84FFCP PHASE2:Hg19::chr17:77923816..77923828,-#_33227129cbc7d1c50c735408406a4e43p@chr17:77923816..77923828, -
2.84e-84FFCP PHASE1:Hg19::chr17:77923816..77923828,-#_33227129cbc7d1c50c735408406a4e43p@chr17:77923816..77923828, -
2.84e-84FFCP PHASE1:Hg19::chr9:12704666..12704671,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12704666..12704671, +
2.84e-84FFCP PHASE1:Hg19::chr15:28360793..28360804,-#_33227129cbc7d1c50c735408406a4e43p@chr15:28360793..28360804, -
2.84e-84FFCP PHASE2:Hg19::chr9:12704666..12704671,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12704666..12704671, +
2.84e-84FFCP PHASE2:Hg19::chr19:3557800..3557811,-#_33227129cbc7d1c50c735408406a4e43p9@MFSD12
2.84e-84FFCP PHASE2:Hg19::chr1:1497446..1497455,-#_33227129cbc7d1c50c735408406a4e43p4@AK129493
2.84e-84FFCP PHASE1:Hg19::chr9:12709200..12709209,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12709200..12709209, +
2.84e-84FFCP PHASE1:Hg19::chr22:20878094..20878105,+#_33227129cbc7d1c50c735408406a4e43p41@MED15
2.84e-84FFCP PHASE2:Hg19::chr9:12709019..12709029,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12709019..12709029, +
2.84e-84FFCP PHASE1:Hg19::chr15:28360857..28360860,-#_33227129cbc7d1c50c735408406a4e43p@chr15:28360857..28360860, -
2.84e-84FFCP PHASE1:Hg19::chr3:69951861..69951868,+#_33227129cbc7d1c50c735408406a4e43p@chr3:69951861..69951868, +
2.84e-84FFCP PHASE2:Hg19::chr11:2920857..2920864,+#_33227129cbc7d1c50c735408406a4e43p13@SLC22A18
2.84e-84FFCP PHASE2:Hg19::chr2:128400821..128400830,-#_33227129cbc7d1c50c735408406a4e43p39@LIMS2
2.84e-84FFCP PHASE1:Hg19::chr1:1497566..1497576,-#_33227129cbc7d1c50c735408406a4e43p3@AK129493
2.84e-84FFCP PHASE1:Hg19::chr6:4610888..4610895,+#_33227129cbc7d1c50c735408406a4e43p2@ENST00000380106
2.84e-84FFCP PHASE2:Hg19::chr22:20878094..20878105,+#_33227129cbc7d1c50c735408406a4e43p41@MED15
2.84e-84FFCP PHASE1:Hg19::chr11:2920857..2920864,+#_33227129cbc7d1c50c735408406a4e43p13@SLC22A18
2.84e-84FFCP PHASE1:Hg19::chr2:128400821..128400830,-#_33227129cbc7d1c50c735408406a4e43p39@LIMS2
2.84e-84FFCP PHASE1:Hg19::chr9:12709019..12709029,+#_33227129cbc7d1c50c735408406a4e43p@chr9:12709019..12709029, +
1.19e-81FFCP PHASE1:Hg19::chr12:56350929..56350943,-#_6012a73029312d5edf37b61a5f68d083p@chr12:56350929..56350943, -
1.19e-81FFCP PHASE2:Hg19::chr12:56350929..56350943,-#_6012a73029312d5edf37b61a5f68d083p@chr12:56350929..56350943, -