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CL:0000149

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Name:visual pigment cell
Namespace:FANTOM
Synonyms: "pigment cell" BROAD []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000147(pigment cell)



Children


is a:CL:0002586 (retinal pigment epithelial cell),FF:12739-135I3 (Melanocyte, donor2 (MC+2))

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
  • 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
  • 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
  • 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
  • 12739-135I3 (Melanocyte, donor2 (MC+2))
  • 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
  • 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)

... further results Mouse (Mus musculus)

  • 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
  • 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
  • 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
  • 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
  • 12739-135I3 (Melanocyte, donor2 (MC+2))
  • 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
  • 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000149 (visual pigment cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.94e-147FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_27b31ad4bfc71404085a87fd1b6cf4cfp@chr1:147150847..147150854, -
6.94e-147FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_27b31ad4bfc71404085a87fd1b6cf4cfp@chr1:147150847..147150854, -
8.91e-111FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_6b35b22b7bf78a41bbe1199a73692c7cp2@SERPINE3
8.91e-111FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_6b35b22b7bf78a41bbe1199a73692c7cp2@SERPINE3
1.3e-110FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_4a150ca5b2cd3eddb0efe3a14f732c2fp@chr13:99135322..99135327, -
1.3e-110FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_4a150ca5b2cd3eddb0efe3a14f732c2fp@chr13:99135322..99135327, -
1.55e-98FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_0f8a4403c537d6003766c59056d084edp@chr13:51913893..51913901, +
1.55e-98FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_0f8a4403c537d6003766c59056d084edp@chr13:51913893..51913901, +
5.72e-89FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_6659a6ea15b7859749a672dc9fcc8b06p@chr11:109990513..109990520, -
5.72e-89FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_6659a6ea15b7859749a672dc9fcc8b06p@chr11:109990513..109990520, -
1.41e-88FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_6831a3a3b16cb2d5a49e187fa6795adbp@chr5:70308745..70308754, -
1.41e-88FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_6831a3a3b16cb2d5a49e187fa6795adbp@chr5:70308745..70308754, -
2.01e-74FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_599fdb10b1a6ba47e3c09915616f4b0cp2@C11orf9
2.01e-74FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_599fdb10b1a6ba47e3c09915616f4b0cp2@C11orf9
4.26e-74FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_5929dd1320fdbca5deb3b3beaaf08366p@chr2:235591306..235591328, +
4.26e-74FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_5929dd1320fdbca5deb3b3beaaf08366p@chr2:235591306..235591328, +
2.4e-66FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_8ebf6f4f9b9bbc8e271e862337881c9cp9@C11orf9
2.4e-66FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_8ebf6f4f9b9bbc8e271e862337881c9cp9@C11orf9
3.35e-66FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_0175e3344a19061022cea51a88799dc5p11@CRISPLD1
3.35e-66FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_0175e3344a19061022cea51a88799dc5p11@CRISPLD1
4.67e-66FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_23ca983b7460e96bd99aec65a59ab88ep5@ENST00000437916
4.67e-66FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_23ca983b7460e96bd99aec65a59ab88ep5@ENST00000437916
2.61e-64FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_89bc96d50f32790863d350b9c0dc0661p1@SERPINE3
2.61e-64FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_89bc96d50f32790863d350b9c0dc0661p1@SERPINE3
5.98e-57FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_669d7967b0dc3ab662667ad190bbf825p2@SLC45A2
5.98e-57FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_669d7967b0dc3ab662667ad190bbf825p2@SLC45A2
2.6e-56FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_04e0be8c33dd3593b9ebc618ef8609c4p@chr3:69928426..69928436, +
2.6e-56FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_04e0be8c33dd3593b9ebc618ef8609c4p@chr3:69928426..69928436, +
3.14e-56FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_52389035e63c5fa616136e3217f23d1fp@chr3:69928404..69928418, +
3.14e-56FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_52389035e63c5fa616136e3217f23d1fp@chr3:69928404..69928418, +
4.58e-56FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_8c6415fa626e1119712f1560a392d533p@chr6:168250971..168250985, +
4.58e-56FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_8c6415fa626e1119712f1560a392d533p@chr22:37633537..37633546, -
4.58e-56FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_8c6415fa626e1119712f1560a392d533p@chr6:168250971..168250985, +
4.58e-56FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_8c6415fa626e1119712f1560a392d533p@chr22:37633537..37633546, -
6.68e-56FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_2ea341b6b5eeefd1b4a845a98ad0cb9dp@chr1:43533230..43533270, +
6.68e-56FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_2ea341b6b5eeefd1b4a845a98ad0cb9d+, p@chr1:43533230..43533270
3.1e-50FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_6214d31fbe33aa31f9ebbd9d0ebc7a9bp@chr13:51913997..51914020, +
3.1e-50FFCP PHASE1:Hg19::chrY:14230731..14230736,-#_6214d31fbe33aa31f9ebbd9d0ebc7a9bp@chrY:14230731..14230736, -
3.1e-50FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_6214d31fbe33aa31f9ebbd9d0ebc7a9bp@chr13:51913997..51914020, +
3.1e-50FFCP PHASE2:Hg19::chrY:14230731..14230736,-#_6214d31fbe33aa31f9ebbd9d0ebc7a9bp@chrY:14230731..14230736, -
3.69e-50FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_41d2a1759fff0bb17143ce52ef6484f1p5@CLIC6
3.69e-50FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_41d2a1759fff0bb17143ce52ef6484f1p5@CLIC6
7.22e-50FFCP PHASE2:Hg19::chr15:55562656..55562664,-#_9e8dc11d4980aaae9cd9ba5e2849f82ap14@RAB27A
7.22e-50FFCP PHASE1:Hg19::chr15:55562656..55562664,-#_9e8dc11d4980aaae9cd9ba5e2849f82ap14@RAB27A
8.47e-50FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_8f5f58207e6d2c50a4ad7a3b42e32007p@chr6:168251000..168251007, +
8.47e-50FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_8f5f58207e6d2c50a4ad7a3b42e32007p@chr6:168251000..168251007, +
9.18e-50FFCP PHASE1:Hg19::chr5:33984741..33984774,-#_68e9225a33ee7b77d1c1aca163a44440p1@SLC45A2
9.18e-50FFCP PHASE2:Hg19::chr5:33984741..33984774,-#_68e9225a33ee7b77d1c1aca163a44440p1@SLC45A2
1.97e-45FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_c100ed806d2ff8cbe31b607f4e79b551p@chr13:99135278..99135298, -
1.97e-45FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_c100ed806d2ff8cbe31b607f4e79b551p@chr13:99135278..99135298, -
1.67e-41FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_1194d4b5fb7b9c0a7029acf6b8e2944cp@chr3:69928371..69928385, +
1.67e-41FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_1194d4b5fb7b9c0a7029acf6b8e2944cp@chr3:69928371..69928385, +
2.2e-41FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_9565173161b35911519df00479820d7fp@chr14:87636652..87636657, -
2.2e-41FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_9565173161b35911519df00479820d7fp@chr14:87636652..87636657, -
1.81e-40FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_8ad5a192bff3020cbca7d27f235b31d7p@chr2:235591286..235591298, +
1.81e-40FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_8ad5a192bff3020cbca7d27f235b31d7p@chr2:235591286..235591298, +
2.71e-40FFCP PHASE2:Hg19::chr12:56347889..56347893,+#_eac1fc690abb58f68d2bc8f3fa863ce0+, p@chr12:56347889..56347893
2.71e-40FFCP PHASE1:Hg19::chr12:56347889..56347893,+#_eac1fc690abb58f68d2bc8f3fa863ce0p@chr12:56347889..56347893, +
3.55e-40FFCP PHASE1:Hg19::chr11:88911074..88911102,+#_f1c4fe8e86fdc645adac29a0fc97927cp2@TYR
3.55e-40FFCP PHASE2:Hg19::chr11:88911074..88911102,+#_f1c4fe8e86fdc645adac29a0fc97927cp2@TYR
4.94e-40FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_94e9602d46debdb44e7838e7376518bfp@chr16:84228961..84228982, +
4.94e-40FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_94e9602d46debdb44e7838e7376518bfp5@MFRP, p6@C1QTNF5
4.94e-40FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_94e9602d46debdb44e7838e7376518bfp@chr16:84228961..84228982, +
4.94e-40FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_94e9602d46debdb44e7838e7376518bfp5@MFRP, p6@C1QTNF5
7.95e-40FFCP PHASE2:Hg19::chr15:48413211..48413239,+#_2993b0ff60499723705e12cd5e0ff9c0p2@SLC24A5
7.95e-40FFCP PHASE1:Hg19::chr15:48413211..48413239,+#_2993b0ff60499723705e12cd5e0ff9c0p2@SLC24A5
2.78e-38FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_c866eb7192ce0fedbd733bea3945abb5p3@CLIC6
2.78e-38FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_c866eb7192ce0fedbd733bea3945abb5p3@CLIC6
4.61e-38FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_879c6de1903a71ff4fb45386a5d13963p7@GDPD5
4.61e-38FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_879c6de1903a71ff4fb45386a5d13963p7@GDPD5
1.26e-37FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_97bc16d6d565d9d0327362baf6933616p4@MFRP, p5@C1QTNF5
1.26e-37FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_97bc16d6d565d9d0327362baf6933616p4@MFRP, p5@C1QTNF5
1.43e-37FFCP PHASE1:Hg19::chr12:56351196..56351222,-#_e4965cb07789a5524d2feb30ae1658b4p7@PMEL
1.43e-37FFCP PHASE2:Hg19::chr12:56351196..56351222,-#_e4965cb07789a5524d2feb30ae1658b4p7@PMEL
9.55e-37FFCP PHASE1:Hg19::chr11:88911033..88911049,+#_ba4453dba31333bc985f3239b366b642p1@TYR
9.55e-37FFCP PHASE2:Hg19::chr11:88911033..88911049,+#_ba4453dba31333bc985f3239b366b642p1@TYR
8.49e-35FFCP PHASE2:Hg19::chr15:55562582..55562617,-#_d03c58eedc40a41e55bfb7774857bd72p3@RAB27A
8.49e-35FFCP PHASE1:Hg19::chr15:55562582..55562617,-#_d03c58eedc40a41e55bfb7774857bd72p3@RAB27A
8.49e-35FFCP PHASE2:Hg19::chr15:55563100..55563135,-#_d03c58eedc40a41e55bfb7774857bd72p4@RAB27A
8.49e-35FFCP PHASE1:Hg19::chr15:55563100..55563135,-#_d03c58eedc40a41e55bfb7774857bd72p4@RAB27A
5.06e-34FFCP PHASE2:Hg19::chr17:932596..932605,-#_dce7fe3928175e8446521505801338c7p@chr17:932596..932605, -
5.06e-34FFCP PHASE1:Hg19::chr17:932596..932605,-#_dce7fe3928175e8446521505801338c7p@chr17:932596..932605, -
8.36e-34FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_3cccdcb96eb24d77af7ce508d58c5eb3p1@SLC16A8
8.36e-34FFCP PHASE2:Hg19::chr17:932340..932343,-#_3cccdcb96eb24d77af7ce508d58c5eb3p@chr17:932340..932343, -
8.36e-34FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_3cccdcb96eb24d77af7ce508d58c5eb3p5@CYP24A1
8.36e-34FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_3cccdcb96eb24d77af7ce508d58c5eb3p5@CYP24A1
8.36e-34FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_3cccdcb96eb24d77af7ce508d58c5eb3p1@SLC16A8
8.36e-34FFCP PHASE1:Hg19::chr17:932340..932343,-#_3cccdcb96eb24d77af7ce508d58c5eb3p@chr17:932340..932343, -
1.38e-33FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_d7d77e86898ea63c77e6db8e28972f76p@chr3:98672197..98672201, +
1.38e-33FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_d7d77e86898ea63c77e6db8e28972f76p@chr3:98672197..98672201, +
1.63e-33FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_ba15d014d2531b801ce2ee58e5298870p1@ENST00000437461
1.63e-33FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_ba15d014d2531b801ce2ee58e5298870p@chr3:183733654..183733680, -
1.63e-33FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_ba15d014d2531b801ce2ee58e5298870p@chr3:183733654..183733680, -
1.63e-33FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_ba15d014d2531b801ce2ee58e5298870p1@ENST00000437461
2.89e-33FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_c4a7e3a89afe20fb298db99ff68a52b0p@chr9:140088882..140088898, -
2.89e-33FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_c4a7e3a89afe20fb298db99ff68a52b0p@chr9:140088882..140088898, -
6.19e-33FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_f4d02250e757f16563ffe34ab1d8fd42p1@LOC100505967
6.19e-33FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_f4d02250e757f16563ffe34ab1d8fd42p1@LOC100505967
1.18e-32FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_ca05b734b4c8f56bbc39a35cb3debd8cp11@SIX3
1.18e-32FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_ca05b734b4c8f56bbc39a35cb3debd8cp11@SIX3