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CL:0000708

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Name:leptomeningeal cell
Namespace:FANTOM
Definition:"Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [JB:jb]
Synonyms: "leptomemingeal cell" RELATED []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000327(extracellular matrix secreting cell),CL:0002319(neural cell)
part_of:UBERON:0003210(blood-cerebrospinal fluid barrier)



Children


derives from:FF:0000091 (human leptomeningeal cell sample),FF:0000111 (mouse leptomeningeal cell sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000708 (leptomeningeal cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr11:60680237..60680241,+#_032f0744bfd767245554ef4d9a66337bp@chr11:60680237..60680241, +
8.98e-131FFCP PHASE1:Hg19::chr11:60680237..60680241,+#_032f0744bfd767245554ef4d9a66337bp@chr11:60680237..60680241, +
3.48e-118FFCP PHASE2:Hg19::chr11:60680219..60680235,+#_85aa0740c0238ed98b02224e2919ecdep@chr11:60680219..60680235, +
3.48e-118FFCP PHASE1:Hg19::chr11:60680219..60680235,+#_85aa0740c0238ed98b02224e2919ecdep@chr11:60680219..60680235, +
5.69e-99FFCP PHASE1:Hg19::chr7:107720432..107720443,+#_a0ac1bcfab28fec5d8f654006353d3cap@chr7:107720432..107720443, +
5.69e-99FFCP PHASE2:Hg19::chr7:107720432..107720443,+#_a0ac1bcfab28fec5d8f654006353d3cap@chr7:107720432..107720443, +
6.24e-88FFCP PHASE1:Hg19::chr5:156811295..156811314,+#_809d425831e08c460f20dc5d2d533888p35@CYFIP2
6.24e-88FFCP PHASE2:Hg19::chr5:156811295..156811314,+#_809d425831e08c460f20dc5d2d533888p35@CYFIP2
7.51e-74FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_9b77a77620f98dcec236bed223246ce5p7@FLVCR2
7.51e-74FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_9b77a77620f98dcec236bed223246ce5p7@FLVCR2
2.39e-66FFCP PHASE2:Hg19::chr11:60680267..60680270,+#_57622a29967bd0ce8c20cc33495fa343p@chr11:60680267..60680270, +
2.39e-66FFCP PHASE1:Hg19::chr11:60680267..60680270,+#_57622a29967bd0ce8c20cc33495fa343p@chr11:60680267..60680270, +
1.68e-58FFCP PHASE2:Mm9::chr4:88940410..88940415,-#_bd3137813de991fa0c7150d980567e23p6@Cdkn2a
1.68e-58FFCP PHASE1:Mm9::chr4:88940410..88940415,-#_bd3137813de991fa0c7150d980567e23p6@Cdkn2a
4.17e-55FFCP PHASE2:Hg19::chr15:80843472..80843480,+#_397c3c68319b0f8b4f8824fde9cb26e1p22@ARNT2
4.17e-55FFCP PHASE1:Hg19::chr15:80843472..80843480,+#_397c3c68319b0f8b4f8824fde9cb26e1p22@ARNT2
1.59e-50FFCP PHASE2:Hg19::chr6:45618665..45618676,+#_ecdedff0e4fb00d57b2b27a695f20377p@chr6:45618665..45618676, +
1.59e-50FFCP PHASE1:Hg19::chr6:45618665..45618676,+#_ecdedff0e4fb00d57b2b27a695f20377p@chr6:45618665..45618676, +
4.73e-47FFCP PHASE2:Hg19::chr15:80842979..80842998,+#_25f4f043b87d3e7dda0a6d3e43884ac8p20@ARNT2
4.73e-47FFCP PHASE1:Hg19::chr15:80842979..80842998,+#_25f4f043b87d3e7dda0a6d3e43884ac8p20@ARNT2
7.81e-45FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_61e9a9dc8235c84d805fb7554ffda8b0p@chr3:146517344..146517356, +
7.81e-45FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_61e9a9dc8235c84d805fb7554ffda8b0p@chr3:146517344..146517356, +
2.97e-44FFCP PHASE2:Hg19::chr5:92498209..92498218,-#_0a1e1ba3e72766bad5725c3a6326d910p@chr5:92498209..92498218, -
2.97e-44FFCP PHASE1:Hg19::chr5:92498209..92498218,-#_0a1e1ba3e72766bad5725c3a6326d910p@chr5:92498209..92498218, -
7.52e-44FFCP PHASE1:Mm9::chr4:138749194..138749201,+#_01e82a950d45bb2928147c7e0724be32p@chr4:138749194..138749201, +
7.52e-44FFCP PHASE2:Mm9::chr4:138749194..138749201,+#_01e82a950d45bb2928147c7e0724be32p@chr4:138749194..138749201, +
1.24e-43FFCP PHASE1:Mm9::chr7:4729743..4729746,-#_a174604cbd3e9c2798493016bda2fce7p1@Il11
1.24e-43FFCP PHASE2:Mm9::chr7:4729743..4729746,-#_a174604cbd3e9c2798493016bda2fce7p1@Il11
1.14e-40FFCP PHASE1:Hg19::chr2:202562749..202562760,-#_0c951442dd18f2288158e45f512f8495p7@MPP4
1.14e-40FFCP PHASE2:Hg19::chr2:202562749..202562760,-#_0c951442dd18f2288158e45f512f8495p7@MPP4
6.35e-36FFCP PHASE2:Mm9::chr11:100820213..100820220,-#_ebae4b7c84f6e9b36ce4dc591e830b1cp@chr11:100820213..100820220, -
6.35e-36FFCP PHASE1:Mm9::chr11:100820213..100820220,-#_ebae4b7c84f6e9b36ce4dc591e830b1cp@chr11:100820213..100820220, -
7.74e-36FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_e5e6ded3e985367f814a698501a5de05p@chr17:1013251..1013277, -
7.74e-36FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_e5e6ded3e985367f814a698501a5de05p@chr17:1013251..1013277, -
1.24e-35FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_e9b914e8743e996bd5498a6420210cb7p10@SYNJ2
1.24e-35FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_e9b914e8743e996bd5498a6420210cb7p10@SYNJ2
2.13e-35FFCP PHASE1:Mm9::chr11:117093260..117093293,+#_522d8dc80eba2d73ebf1dba811e8db79p34@Sept9
2.13e-35FFCP PHASE2:Mm9::chr11:117093260..117093293,+#_522d8dc80eba2d73ebf1dba811e8db79p34@Sept9
2.25e-35FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_88e4a76e374fe43d743bc9a650d75cefp@chr3:147088197..147088208, -
2.25e-35FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_88e4a76e374fe43d743bc9a650d75cefp@chr3:147088197..147088208, -
2.45e-34FFCP PHASE2:Hg19::chr7:140341251..140341265,-#_edad83fa2abcca54f5ade4ad925467a5p3@DENND2A
2.45e-34FFCP PHASE1:Hg19::chr7:140341251..140341265,-#_edad83fa2abcca54f5ade4ad925467a5p3@DENND2A
1.09e-30FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_c874e68921e70150e950c1b7b22bcb15p@chr11:60680190..60680212, +
1.09e-30FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_c874e68921e70150e950c1b7b22bcb15p@chr11:60680190..60680212, +
4.77e-30FFCP PHASE1:Mm9::chr19:54120233..54120243,+#_80d3cb42f64a42434988de468e67625ap4@Adra2a
4.77e-30FFCP PHASE2:Mm9::chr19:54120233..54120243,+#_80d3cb42f64a42434988de468e67625ap4@Adra2a
4.77e-30FFCP PHASE1:Mm9::chr2:119000878..119000908,-#_80d3cb42f64a42434988de468e67625ap@chr2:119000878..119000908, -
4.77e-30FFCP PHASE2:Mm9::chr2:119000878..119000908,-#_80d3cb42f64a42434988de468e67625ap@chr2:119000878..119000908, -
5.61e-30FFCP PHASE2:Hg19::chr17:48346424..48346435,+#_c74484cfa45e8d0d303ad8408d84e1aep@chr17:48346424..48346435, +
5.61e-30FFCP PHASE1:Hg19::chr17:48346424..48346435,+#_c74484cfa45e8d0d303ad8408d84e1aep@chr17:48346424..48346435, +
7.41e-26FFCP PHASE1:Hg19::chrX:136649632..136649652,+#_7ee0f6e24b007044ae7fb2186e94cdb3p@chrX:136649632..136649652, +
7.41e-26FFCP PHASE2:Hg19::chrX:136649632..136649652,+#_7ee0f6e24b007044ae7fb2186e94cdb3p@chrX:136649632..136649652, +
1.35e-25FFCP PHASE1:Mm9::chr19:54120078..54120093,+#_06cbffd1ac2556bbf03dfe1feaf4a470p6@Adra2a
1.35e-25FFCP PHASE2:Mm9::chr19:54120078..54120093,+#_06cbffd1ac2556bbf03dfe1feaf4a470p6@Adra2a
1.35e-25FFCP PHASE2:Mm9::chr5:28144366..28144367,-#_06cbffd1ac2556bbf03dfe1feaf4a470p@chr5:28144366..28144367, -
1.35e-25FFCP PHASE1:Mm9::chr5:28144366..28144367,-#_06cbffd1ac2556bbf03dfe1feaf4a470p@chr5:28144366..28144367, -
2.99e-25FFCP PHASE2:Hg19::chr2:202562763..202562772,-#_a590ccb2c8c18a334795107df285cd8dp8@MPP4
2.99e-25FFCP PHASE1:Hg19::chr2:202562763..202562772,-#_a590ccb2c8c18a334795107df285cd8dp8@MPP4
4.87e-25FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_ecd29fceac3393b5f79de45eae556157p30@PRKCH
4.87e-25FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_ecd29fceac3393b5f79de45eae556157p30@PRKCH
8.75e-25FFCP PHASE2:Hg19::chr3:147130332..147130352,+#_3a5cf7f78f81aa5207a6960a3691a938p@chr3:147130332..147130352, +
8.75e-25FFCP PHASE1:Hg19::chr3:147130332..147130352,+#_3a5cf7f78f81aa5207a6960a3691a938p@chr3:147130332..147130352, +
1.03e-24FFCP PHASE2:Hg19::chr3:147114260..147114290,-#_2cf14a7cfeb9c530708f20dcbf7636cbp3@ZIC4
1.03e-24FFCP PHASE1:Hg19::chr3:147114260..147114290,-#_2cf14a7cfeb9c530708f20dcbf7636cbp3@ZIC4
9.24e-24FFCP PHASE2:Hg19::chr3:147131185..147131202,+#_bcd2111a84b09c58cf6f6aafd3bd4a25+, p@chr3:147131185..147131202
9.24e-24FFCP PHASE1:Hg19::chr3:147131185..147131202,+#_bcd2111a84b09c58cf6f6aafd3bd4a25p@chr3:147131185..147131202, +
2.62e-23FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_e91253e9e5bf705f888e4016b4abe078p@chr10:74020629..74020634, -
2.62e-23FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_e91253e9e5bf705f888e4016b4abe078p@chr10:74020629..74020634, -
3.06e-23FFCP PHASE2:Mm9::chr5:136364908..136364912,+#_7538f03f4e9ac777ceb09b7e6d75f2dep@chr5:136364908..136364912, +
3.06e-23FFCP PHASE1:Mm9::chr5:136364908..136364912,+#_7538f03f4e9ac777ceb09b7e6d75f2dep@chr5:136364908..136364912, +
3.27e-23FFCP PHASE2:Hg19::chr3:147128275..147128285,+#_b9f3c24a6f30090773323a0058890b1bp5@AB464362
3.27e-23FFCP PHASE1:Hg19::chr3:147128275..147128285,+#_b9f3c24a6f30090773323a0058890b1bp5@AB464362
3.27e-23FFCP PHASE2:Hg19::chr2:202562827..202562835,-#_b9f3c24a6f30090773323a0058890b1bp10@MPP4
3.27e-23FFCP PHASE1:Hg19::chr2:202562827..202562835,-#_b9f3c24a6f30090773323a0058890b1bp10@MPP4
4.61e-23FFCP PHASE2:Hg19::chr10:69902750..69902779,+#_3997d6e35be6a1a99383bb2333f5921ap@chr10:69902750..69902779, +
4.61e-23FFCP PHASE1:Hg19::chr10:69902750..69902779,+#_3997d6e35be6a1a99383bb2333f5921ap@chr10:69902750..69902779, +
5.15e-23FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_47b88df22beb157685ec6f71b37fc87dp5@CMKLR1
5.15e-23FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_47b88df22beb157685ec6f71b37fc87dp5@CMKLR1
6.44e-23FFCP PHASE2:Hg19::chr3:147123837..147123848,-#_18d68e8149ff47707ff7b31779334988p7@ZIC4
6.44e-23FFCP PHASE1:Hg19::chr3:147123837..147123848,-#_18d68e8149ff47707ff7b31779334988p7@ZIC4
9.5e-23FFCP PHASE2:Mm9::chr17:45832371..45832382,+#_d466990909db5a38ecd5cf321fe48659p4@Mrpl14
9.5e-23FFCP PHASE1:Mm9::chr17:45832371..45832382,+#_d466990909db5a38ecd5cf321fe48659p4@Mrpl14
9.47e-22FFCP PHASE1:Hg19::chr20:2781623..2781635,-#_620139219beefd9d9502b682fdc86d4fp5@CPXM1
9.47e-22FFCP PHASE2:Hg19::chr20:2781623..2781635,-#_620139219beefd9d9502b682fdc86d4fp5@CPXM1
3.63e-21FFCP PHASE2:Hg19::chr10:112207187..112207199,-#_2228fb420243b3a626d1dcd1dc1bef8ep@chr10:112207187..112207199, -
3.63e-21FFCP PHASE1:Hg19::chr10:112207187..112207199,-#_2228fb420243b3a626d1dcd1dc1bef8ep@chr10:112207187..112207199, -
6.43e-21FFCP PHASE1:Mm9::chr19:10067446..10067483,-#_07c300917cd07218c3845571d48d98cap5@Best1, p5@LOC100504840
6.43e-21FFCP PHASE2:Mm9::chr19:10067446..10067483,-#_07c300917cd07218c3845571d48d98cap5@Best1, p5@LOC100504840
8.07e-21FFCP PHASE2:Mm9::chr2:35140218..35140229,+#_dd1076180b3cbe5f2138cb61d3d59f2bp@chr2:35140218..35140229, +
8.07e-21FFCP PHASE1:Mm9::chr2:35140218..35140229,+#_dd1076180b3cbe5f2138cb61d3d59f2bp@chr2:35140218..35140229, +
8.47e-21FFCP PHASE1:Hg19::chr6:151562148..151562162,+#_88085b522dda6d8c84817ad2a6ee700fp@chr6:151562148..151562162, +
8.47e-21FFCP PHASE2:Hg19::chr6:151562148..151562162,+#_88085b522dda6d8c84817ad2a6ee700fp@chr6:151562148..151562162, +
1.74e-20FFCP PHASE2:Hg19::chr3:147127489..147127503,+#_5c4866ad7944a9ddeb10104191664317p11@ZIC1
1.74e-20FFCP PHASE1:Hg19::chr3:147127489..147127503,+#_5c4866ad7944a9ddeb10104191664317p11@ZIC1
2.05e-20FFCP PHASE1:Hg19::chr9:6565462..6565475,-#_7208227c69955c7978f3d90905dbc631p5@GLDC
2.05e-20FFCP PHASE2:Hg19::chr9:6565462..6565475,-#_7208227c69955c7978f3d90905dbc631p5@GLDC
3.01e-20FFCP PHASE2:Hg19::chr3:147131775..147131783,+#_78fd5b4a11f9be5a7b87e58683bc3348p@chr3:147131775..147131783, +
3.01e-20FFCP PHASE1:Hg19::chr3:147131775..147131783,+#_78fd5b4a11f9be5a7b87e58683bc3348p@chr3:147131775..147131783, +
3.91e-20FFCP PHASE1:Mm9::chr11:86449013..86449037,-#_87c684b42bc23b76caebc69c12e40fc6p@chr11:86449013..86449037, -
3.91e-20FFCP PHASE2:Mm9::chr11:86449013..86449037,-#_87c684b42bc23b76caebc69c12e40fc6p@chr11:86449013..86449037, -