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CL:0000805

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Name:immature single positive thymocyte
Namespace:FANTOM
Definition:"A thymocyte that has the phenotype CD4-negative, CD8-positive, CD44-negative, CD25-negative, and pre-TCR-positive." [GO_REF:0000031, GOC:add, GOC:tfm, http://www.immgen.org/index_content.html, ISBN:0781735149]
Synonyms: "immature single positive T cell" EXACT []
"immature single positive T lymphocyte" EXACT []
"immature single positive T-lymphocyte" EXACT []
"ISP" EXACT []
"T.ISP.th" EXACT []
Comments:Note that this type of thymocyte has passed the beta-selection checkpoint and is rapidly proliferating and rearranging the T cell receptor alpha chain and expressing the CD8 coreceptor. This stage comes between the DN4 and DP stages.


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000893(thymocyte)
develops_from:CL:0000808(DN4 thymocyte)



Children


develops from:CL:0000809 (double-positive, alpha-beta thymocyte)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000805 (immature single positive thymocyte), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_9a30f627e0d3a9c3770ec4dbe5de9457p@chr2:162762361..162762364, +
3.29e-195FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_9a30f627e0d3a9c3770ec4dbe5de9457p@chr2:162762361..162762364, +
1.55e-98FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_c7aafc511728e0b4c33af7aad1e3932bp1@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr4:128884938..128884941,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:128884938..128884941, -
1.55e-98FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr9:72117884..72117889, -
1.55e-98FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:111448516..111448521, +
1.55e-98FFCP PHASE1:Hg19::chr13:49078833..49078841,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr13:49078833..49078841, -
1.55e-98FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr5:24272119..24272147, -
1.55e-98FFCP PHASE2:Hg19::chr21:47278815..47278834,+#_c7aafc511728e0b4c33af7aad1e3932bp6@PCBP3
1.55e-98FFCP PHASE2:Hg19::chr8:75251775..75251785,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:75251775..75251785, +
1.55e-98FFCP PHASE2:Hg19::chr8:51970952..51970959,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:51970952..51970959, +
1.55e-98FFCP PHASE1:Hg19::chr2:146687090..146687095,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr2:146687090..146687095, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_c7aafc511728e0b4c33af7aad1e3932b-, p@chr9:4544914..4544917
1.55e-98FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr1:189141918..189141929, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842470..175842486,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:175842470..175842486, -
1.55e-98FFCP PHASE1:Hg19::chr7:38287827..38287832,-#_c7aafc511728e0b4c33af7aad1e3932b-, p@chr7:38287827..38287832
1.55e-98FFCP PHASE1:Hg19::chr7:117926347..117926353,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr5:24272119..24272147,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr5:24272119..24272147, -
1.55e-98FFCP PHASE1:Hg19::chr15:69972162..69972169,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr15:69972162..69972169, +
1.55e-98FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_c7aafc511728e0b4c33af7aad1e3932bp1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr9:87797549..87797564,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr9:87797549..87797564, +
1.55e-98FFCP PHASE2:Hg19::chr3:192598433..192598481,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr4:105805755..105805761,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:105805755..105805761, +
1.55e-98FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr15:91989133..91989141, +
1.55e-98FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:176123823..176123829, +
1.55e-98FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr2:141989111..141989114, -
1.55e-98FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:134707474..134707504, -
1.55e-98FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr7:38287827..38287832, -
1.55e-98FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_c7aafc511728e0b4c33af7aad1e3932bp6@PCBP3
1.55e-98FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:133657589..133657598, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr16:67022368..67022374, -
1.55e-98FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_c7aafc511728e0b4c33af7aad1e3932b-, p@chr8:67519931..67519935
1.55e-98FFCP PHASE1:Hg19::chr7:19479837..19479844,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr7:19479837..19479844, +
1.55e-98FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr17:14101134..14101143, +
1.55e-98FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr7:19479837..19479844, +
1.55e-98FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr9:72117884..72117889,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr9:72117884..72117889, -
1.55e-98FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr2:146998057..146998070, -
1.55e-98FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:128884938..128884941, -
1.55e-98FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:175842511..175842520, -
1.55e-98FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr1:200990231..200990238, -
1.55e-98FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr1:237900222..237900230, +
1.55e-98FFCP PHASE2:Hg19::chr8:16739475..16739490,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:16739475..16739490, -
1.55e-98FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:175842511..175842520, -
1.55e-98FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:114877856..114877881, -
1.55e-98FFCP PHASE2:Hg19::chr15:91989101..91989105,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr15:91989101..91989105, +
1.55e-98FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr21:39490932..39490937, +
1.55e-98FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr22:46041912..46041915, +
1.55e-98FFCP PHASE2:Hg19::chr4:133657589..133657598,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:133657589..133657598, -
1.55e-98FFCP PHASE1:Hg19::chr16:67022522..67022529,+#_c7aafc511728e0b4c33af7aad1e3932bp12@CES4A
1.55e-98FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_c7aafc511728e0b4c33af7aad1e3932bp2@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr2:146687090..146687095, +
1.55e-98FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr21:43982135..43982142, +
1.55e-98FFCP PHASE2:Hg19::chr14:22962827..22962830,+#_c7aafc511728e0b4c33af7aad1e3932bp3@uc001weo.2
1.55e-98FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr1:189141918..189141929, +
1.55e-98FFCP PHASE1:Hg19::chr6:128263833..128263838,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr6:128263833..128263838, -
1.55e-98FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:133657651..133657654, -
1.55e-98FFCP PHASE2:Hg19::chr2:141989111..141989114,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr2:141989111..141989114, -
1.55e-98FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_c7aafc511728e0b4c33af7aad1e3932b+, p@chr3:152204326..152204345
1.55e-98FFCP PHASE2:Hg19::chr10:11846830..11846860,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr10:11846830..11846860, -
1.55e-98FFCP PHASE2:Hg19::chr17:14103251..14103258,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr17:14103251..14103258, +
1.55e-98FFCP PHASE2:Hg19::chr13:49078833..49078841,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr13:49078833..49078841, -
1.55e-98FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr1:237900222..237900230, +
1.55e-98FFCP PHASE1:Hg19::chr4:105805755..105805761,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:105805755..105805761, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:134707474..134707504, -
1.55e-98FFCP PHASE1:Hg19::chr4:175842537..175842553,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:175842537..175842553, -
1.55e-98FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr2:162762231..162762234, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842537..175842553,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:175842537..175842553, -
1.55e-98FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr22:46041912..46041915, +
1.55e-98FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr15:91989133..91989141, +
1.55e-98FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr21:43982135..43982142, +
1.55e-98FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:133657651..133657654, -
1.55e-98FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr21:39490932..39490937, +
1.55e-98FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_c7aafc511728e0b4c33af7aad1e3932bp1@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_c7aafc511728e0b4c33af7aad1e3932bp3@uc001weo.2
1.55e-98FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:134707420..134707442, -
1.55e-98FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:176123823..176123829, +
1.55e-98FFCP PHASE2:Hg19::chr16:67022522..67022529,+#_c7aafc511728e0b4c33af7aad1e3932bp12@CES4A
1.55e-98FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr2:202521027..202521058, -
1.55e-98FFCP PHASE1:Hg19::chr1:200990231..200990238,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr1:200990231..200990238, -
1.55e-98FFCP PHASE2:Hg19::chr6:128263833..128263838,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr6:128263833..128263838, -
1.55e-98FFCP PHASE1:Hg19::chr9:87797549..87797564,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr9:87797549..87797564, +
1.55e-98FFCP PHASE1:Hg19::chr8:75251775..75251785,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:75251775..75251785, +
1.55e-98FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr17:14101134..14101143,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr17:14101134..14101143, +
1.55e-98FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_c7aafc511728e0b4c33af7aad1e3932bp@chrX:133321044..133321049, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707420..134707442,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr4:134707420..134707442, -
1.55e-98FFCP PHASE1:Hg19::chr8:16739475..16739490,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:16739475..16739490, -
1.55e-98FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_c7aafc511728e0b4c33af7aad1e3932bp2@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr3:152204326..152204345,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr3:152204326..152204345, +
1.55e-98FFCP PHASE2:Hg19::chr7:117926347..117926353,-#_c7aafc511728e0b4c33af7aad1e3932bp@chr7:117926347..117926353, -
1.55e-98FFCP PHASE2:Hg19::chrX:133321044..133321049,+#_c7aafc511728e0b4c33af7aad1e3932bp@chrX:133321044..133321049, +
1.55e-98FFCP PHASE1:Hg19::chr2:162762231..162762234,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr2:162762231..162762234, +
1.55e-98FFCP PHASE1:Hg19::chr8:51970952..51970959,+#_c7aafc511728e0b4c33af7aad1e3932bp@chr8:51970952..51970959, +