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CL:0000806

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Name:DN2 thymocyte
Namespace:FANTOM
Definition:"A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-positive, and CD25-positive." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "DN2 alpha-beta immature T lymphocyte" EXACT []
"DN2 alpha-beta immature T-cell" EXACT []
"DN2 alpha-beta immature T-lymphocyte" EXACT []
"DN2 cell" EXACT []
"DN2 immature T cell" EXACT []
"double negative 2" EXACT []
"preT.DN2.Th" EXACT []
"TN2 cell" EXACT []
"TN2 thymocyte" EXACT []
Comments:Note that this type of thymocyte is at the earliest stage of T cell receptor rearrangement of the beta, gamma, and delta T cell receptor chains.


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002489(double negative thymocyte)
develops_from:CL:0000894(DN1 thymic pro-T cell)



Children


develops from:CL:0000807 (DN3 thymocyte)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000806 (DN2 thymocyte), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_6090dd2978c5f4df5fff9d81cb497722p@chr2:162762361..162762364, +
3.29e-195FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_6090dd2978c5f4df5fff9d81cb497722p@chr2:162762361..162762364, +
1.55e-98FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_36da63ca5254db5ccd0e6567c718599dp@chr15:69972162..69972169, +
1.55e-98FFCP PHASE1:Hg19::chr9:4544914..4544917,-#_36da63ca5254db5ccd0e6567c718599dp@chr9:4544914..4544917, -
1.55e-98FFCP PHASE2:Hg19::chr4:175842470..175842486,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:175842470..175842486, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_36da63ca5254db5ccd0e6567c718599dp@chr15:91989101..91989105, +
1.55e-98FFCP PHASE2:Hg19::chr9:116857558..116857566,-#_36da63ca5254db5ccd0e6567c718599dp@chr9:116857558..116857566, -
1.55e-98FFCP PHASE1:Hg19::chr9:116857558..116857566,-#_36da63ca5254db5ccd0e6567c718599dp@chr9:116857558..116857566, -
1.55e-98FFCP PHASE2:Hg19::chr8:114877856..114877881,-#_36da63ca5254db5ccd0e6567c718599dp@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr16:67022368..67022374,-#_36da63ca5254db5ccd0e6567c718599dp@chr16:67022368..67022374, -
1.55e-98FFCP PHASE1:Hg19::chr17:14103251..14103258,+#_36da63ca5254db5ccd0e6567c718599dp@chr17:14103251..14103258, +
1.55e-98FFCP PHASE1:Hg19::chr2:202521027..202521058,-#_36da63ca5254db5ccd0e6567c718599dp@chr2:202521027..202521058, -
1.55e-98FFCP PHASE1:Hg19::chr4:134707449..134707458,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr4:2428062..2428080,+#_36da63ca5254db5ccd0e6567c718599dp1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr13:24623546..24623587,-#_36da63ca5254db5ccd0e6567c718599dp@chr13:24623546..24623587, -
1.55e-98FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_36da63ca5254db5ccd0e6567c718599dp1@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr4:128884938..128884941,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:128884938..128884941, -
1.55e-98FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_36da63ca5254db5ccd0e6567c718599dp@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_36da63ca5254db5ccd0e6567c718599dp@chr5:24272119..24272147, -
1.55e-98FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_36da63ca5254db5ccd0e6567c718599dp@chr9:72117884..72117889, -
1.55e-98FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_36da63ca5254db5ccd0e6567c718599dp@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_36da63ca5254db5ccd0e6567c718599d-, p@chr9:4544914..4544917
1.55e-98FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_36da63ca5254db5ccd0e6567c718599dp@chr1:189141918..189141929, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842470..175842486,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:175842470..175842486, -
1.55e-98FFCP PHASE2:Hg19::chr21:47278815..47278834,+#_36da63ca5254db5ccd0e6567c718599dp6@PCBP3
1.55e-98FFCP PHASE2:Hg19::chr8:75251775..75251785,+#_36da63ca5254db5ccd0e6567c718599dp@chr8:75251775..75251785, +
1.55e-98FFCP PHASE2:Hg19::chr8:51970952..51970959,+#_36da63ca5254db5ccd0e6567c718599dp@chr8:51970952..51970959, +
1.55e-98FFCP PHASE1:Hg19::chr2:146687090..146687095,+#_36da63ca5254db5ccd0e6567c718599dp@chr2:146687090..146687095, +
1.55e-98FFCP PHASE1:Hg19::chr7:117926347..117926353,-#_36da63ca5254db5ccd0e6567c718599dp@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr5:24272119..24272147,-#_36da63ca5254db5ccd0e6567c718599dp@chr5:24272119..24272147, -
1.55e-98FFCP PHASE1:Hg19::chr15:69972162..69972169,+#_36da63ca5254db5ccd0e6567c718599dp@chr15:69972162..69972169, +
1.55e-98FFCP PHASE1:Hg19::chr7:38287827..38287832,-#_36da63ca5254db5ccd0e6567c718599d-, p@chr7:38287827..38287832
1.55e-98FFCP PHASE2:Hg19::chr9:87797549..87797564,+#_36da63ca5254db5ccd0e6567c718599dp@chr9:87797549..87797564, +
1.55e-98FFCP PHASE2:Hg19::chr3:192598433..192598481,-#_36da63ca5254db5ccd0e6567c718599dp@chr3:192598433..192598481, -
1.55e-98FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_36da63ca5254db5ccd0e6567c718599dp1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr4:105805755..105805761,+#_36da63ca5254db5ccd0e6567c718599dp@chr4:105805755..105805761, +
1.55e-98FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_36da63ca5254db5ccd0e6567c718599dp@chr15:91989133..91989141, +
1.55e-98FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_36da63ca5254db5ccd0e6567c718599dp@chr4:176123823..176123829, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:134707474..134707504, -
1.55e-98FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_36da63ca5254db5ccd0e6567c718599dp@chr2:141989111..141989114, -
1.55e-98FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_36da63ca5254db5ccd0e6567c718599dp@chr7:38287827..38287832, -
1.55e-98FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_36da63ca5254db5ccd0e6567c718599dp6@PCBP3
1.55e-98FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:133657589..133657598, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_36da63ca5254db5ccd0e6567c718599dp@chr16:67022368..67022374, -
1.55e-98FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_36da63ca5254db5ccd0e6567c718599d-, p@chr8:67519931..67519935
1.55e-98FFCP PHASE1:Hg19::chr7:19479837..19479844,+#_36da63ca5254db5ccd0e6567c718599dp@chr7:19479837..19479844, +
1.55e-98FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_36da63ca5254db5ccd0e6567c718599dp@chr17:14101134..14101143, +
1.55e-98FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:128884938..128884941, -
1.55e-98FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:175842511..175842520, -
1.55e-98FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_36da63ca5254db5ccd0e6567c718599dp@chr7:19479837..19479844, +
1.55e-98FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_36da63ca5254db5ccd0e6567c718599dp@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr9:72117884..72117889,-#_36da63ca5254db5ccd0e6567c718599dp@chr9:72117884..72117889, -
1.55e-98FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_36da63ca5254db5ccd0e6567c718599dp@chr2:146998057..146998070, -
1.55e-98FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_36da63ca5254db5ccd0e6567c718599dp@chr1:200990231..200990238, -
1.55e-98FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_36da63ca5254db5ccd0e6567c718599dp@chr1:237900222..237900230, +
1.55e-98FFCP PHASE2:Hg19::chr8:16739475..16739490,-#_36da63ca5254db5ccd0e6567c718599dp@chr8:16739475..16739490, -
1.55e-98FFCP PHASE2:Hg19::chr15:91989101..91989105,+#_36da63ca5254db5ccd0e6567c718599dp@chr15:91989101..91989105, +
1.55e-98FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_36da63ca5254db5ccd0e6567c718599dp@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_36da63ca5254db5ccd0e6567c718599dp@chr21:39490932..39490937, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:175842511..175842520, -
1.55e-98FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_36da63ca5254db5ccd0e6567c718599dp@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_36da63ca5254db5ccd0e6567c718599dp2@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_36da63ca5254db5ccd0e6567c718599dp3@uc001weo.2
1.55e-98FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_36da63ca5254db5ccd0e6567c718599dp@chr22:46041912..46041915, +
1.55e-98FFCP PHASE2:Hg19::chr4:133657589..133657598,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:133657589..133657598, -
1.55e-98FFCP PHASE1:Hg19::chr16:67022522..67022529,+#_36da63ca5254db5ccd0e6567c718599dp12@CES4A
1.55e-98FFCP PHASE2:Hg19::chr14:22962827..22962830,+#_36da63ca5254db5ccd0e6567c718599dp3@uc001weo.2
1.55e-98FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_36da63ca5254db5ccd0e6567c718599dp@chr2:146687090..146687095, +
1.55e-98FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_36da63ca5254db5ccd0e6567c718599dp@chr21:43982135..43982142, +
1.55e-98FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:133657651..133657654, -
1.55e-98FFCP PHASE2:Hg19::chr2:141989111..141989114,-#_36da63ca5254db5ccd0e6567c718599dp@chr2:141989111..141989114, -
1.55e-98FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_36da63ca5254db5ccd0e6567c718599d+, p@chr3:152204326..152204345
1.55e-98FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_36da63ca5254db5ccd0e6567c718599dp@chr1:189141918..189141929, +
1.55e-98FFCP PHASE1:Hg19::chr6:128263833..128263838,-#_36da63ca5254db5ccd0e6567c718599dp@chr6:128263833..128263838, -
1.55e-98FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_36da63ca5254db5ccd0e6567c718599dp@chr1:237900222..237900230, +
1.55e-98FFCP PHASE1:Hg19::chr4:105805755..105805761,+#_36da63ca5254db5ccd0e6567c718599dp@chr4:105805755..105805761, +
1.55e-98FFCP PHASE2:Hg19::chr10:11846830..11846860,-#_36da63ca5254db5ccd0e6567c718599dp@chr10:11846830..11846860, -
1.55e-98FFCP PHASE2:Hg19::chr17:14103251..14103258,+#_36da63ca5254db5ccd0e6567c718599dp@chr17:14103251..14103258, +
1.55e-98FFCP PHASE2:Hg19::chr13:49078833..49078841,-#_36da63ca5254db5ccd0e6567c718599dp@chr13:49078833..49078841, -
1.55e-98FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:134707474..134707504, -
1.55e-98FFCP PHASE1:Hg19::chr4:175842537..175842553,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:175842537..175842553, -
1.55e-98FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_36da63ca5254db5ccd0e6567c718599dp@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_36da63ca5254db5ccd0e6567c718599dp@chr2:162762231..162762234, +
1.55e-98FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_36da63ca5254db5ccd0e6567c718599dp@chr15:91989133..91989141, +
1.55e-98FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_36da63ca5254db5ccd0e6567c718599dp@chr21:43982135..43982142, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842537..175842553,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:175842537..175842553, -
1.55e-98FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_36da63ca5254db5ccd0e6567c718599dp@chr22:46041912..46041915, +
1.55e-98FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_36da63ca5254db5ccd0e6567c718599dp@chr21:39490932..39490937, +
1.55e-98FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_36da63ca5254db5ccd0e6567c718599dp1@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:133657651..133657654, -
1.55e-98FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:134707420..134707442, -
1.55e-98FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_36da63ca5254db5ccd0e6567c718599dp@chr13:24623546..24623587, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022522..67022529,+#_36da63ca5254db5ccd0e6567c718599dp12@CES4A
1.55e-98FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_36da63ca5254db5ccd0e6567c718599dp@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_36da63ca5254db5ccd0e6567c718599dp@chr4:176123823..176123829, +
1.55e-98FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_36da63ca5254db5ccd0e6567c718599dp@chr2:202521027..202521058, -
1.55e-98FFCP PHASE1:Hg19::chr8:75251775..75251785,+#_36da63ca5254db5ccd0e6567c718599dp@chr8:75251775..75251785, +
1.55e-98FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_36da63ca5254db5ccd0e6567c718599dp@chr4:175858389..175858405, -