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CL:0000807

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Name:DN3 thymocyte
Namespace:FANTOM
Definition:"A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "DN3 alpha-beta immature T lymphocyte" EXACT []
"DN3 alpha-beta immature T-cell" EXACT []
"DN3 alpha-beta immature T-lymphocyte" EXACT []
"DN3 cell" EXACT []
"DN3 immature T cell" EXACT []
"double negative 3" EXACT []
"preT.DN3.Th" EXACT []
"TN3 cell" EXACT []
"TN3 thymocyte" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002489(double negative thymocyte)
develops_from:CL:0000806(DN2 thymocyte)



Children


develops from:CL:0000808 (DN4 thymocyte)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000807 (DN3 thymocyte), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_52ca25049da0b520f58cbc67b8a8d756p@chr2:162762361..162762364, +
3.29e-195FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_52ca25049da0b520f58cbc67b8a8d756p@chr2:162762361..162762364, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842537..175842553,-#_f301ed1c6ab9f4f162be123941014381p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_f301ed1c6ab9f4f162be123941014381p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_f301ed1c6ab9f4f162be123941014381p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_f301ed1c6ab9f4f162be123941014381p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr4:175842537..175842553,-#_f301ed1c6ab9f4f162be123941014381p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_f301ed1c6ab9f4f162be123941014381p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_f301ed1c6ab9f4f162be123941014381p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_f301ed1c6ab9f4f162be123941014381p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_f301ed1c6ab9f4f162be123941014381p1@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_f301ed1c6ab9f4f162be123941014381p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_f301ed1c6ab9f4f162be123941014381p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_f301ed1c6ab9f4f162be123941014381p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022522..67022529,+#_f301ed1c6ab9f4f162be123941014381p12@CES4A
1.55e-98FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_f301ed1c6ab9f4f162be123941014381p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_f301ed1c6ab9f4f162be123941014381p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_f301ed1c6ab9f4f162be123941014381p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE1:Hg19::chr8:75251775..75251785,+#_f301ed1c6ab9f4f162be123941014381p@chr8:75251775..75251785, +
1.55e-98FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_f301ed1c6ab9f4f162be123941014381p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr1:200990231..200990238,-#_f301ed1c6ab9f4f162be123941014381p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE2:Hg19::chr6:128263833..128263838,-#_f301ed1c6ab9f4f162be123941014381p@chr6:128263833..128263838, -
1.55e-98FFCP PHASE1:Hg19::chr9:87797549..87797564,+#_f301ed1c6ab9f4f162be123941014381p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707420..134707442,-#_f301ed1c6ab9f4f162be123941014381p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE1:Hg19::chr17:14101134..14101143,+#_f301ed1c6ab9f4f162be123941014381p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_f301ed1c6ab9f4f162be123941014381p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE2:Hg19::chr7:117926347..117926353,-#_f301ed1c6ab9f4f162be123941014381p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE2:Hg19::chrX:133321044..133321049,+#_f301ed1c6ab9f4f162be123941014381p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE1:Hg19::chr8:16739475..16739490,-#_f301ed1c6ab9f4f162be123941014381p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_f301ed1c6ab9f4f162be123941014381p2@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr3:152204326..152204345,+#_f301ed1c6ab9f4f162be123941014381p@chr3:152204326..152204345, +
1.55e-98FFCP PHASE1:Hg19::chr2:162762231..162762234,+#_f301ed1c6ab9f4f162be123941014381p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE1:Hg19::chr8:51970952..51970959,+#_f301ed1c6ab9f4f162be123941014381p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE2:Hg19::chr2:146998057..146998070,-#_f301ed1c6ab9f4f162be123941014381p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE1:Hg19::chr9:4544914..4544917,-#_f301ed1c6ab9f4f162be123941014381p@chr9:4544914..4544917, -
1.55e-98FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_f301ed1c6ab9f4f162be123941014381p@chr15:69972162..69972169, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842470..175842486,-#_f301ed1c6ab9f4f162be123941014381p@chr4:175842470..175842486, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_f301ed1c6ab9f4f162be123941014381p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE2:Hg19::chr9:116857558..116857566,-#_f301ed1c6ab9f4f162be123941014381p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE1:Hg19::chr9:116857558..116857566,-#_f301ed1c6ab9f4f162be123941014381p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE2:Hg19::chr8:114877856..114877881,-#_f301ed1c6ab9f4f162be123941014381p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr16:67022368..67022374,-#_f301ed1c6ab9f4f162be123941014381p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE1:Hg19::chr4:134707449..134707458,-#_f301ed1c6ab9f4f162be123941014381p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr4:2428062..2428080,+#_f301ed1c6ab9f4f162be123941014381p1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr13:24623546..24623587,-#_f301ed1c6ab9f4f162be123941014381p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE1:Hg19::chr17:14103251..14103258,+#_f301ed1c6ab9f4f162be123941014381p@chr17:14103251..14103258, +
1.55e-98FFCP PHASE1:Hg19::chr2:202521027..202521058,-#_f301ed1c6ab9f4f162be123941014381p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_f301ed1c6ab9f4f162be123941014381p3@uc001weo.2
1.55e-98FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_f301ed1c6ab9f4f162be123941014381p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_f301ed1c6ab9f4f162be123941014381p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_f301ed1c6ab9f4f162be123941014381p1@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr4:128884938..128884941,-#_f301ed1c6ab9f4f162be123941014381p@chr4:128884938..128884941, -
1.55e-98FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_f301ed1c6ab9f4f162be123941014381p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_f301ed1c6ab9f4f162be123941014381p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_f301ed1c6ab9f4f162be123941014381p@chr5:24272119..24272147, -
1.55e-98FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_f301ed1c6ab9f4f162be123941014381p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842470..175842486,-#_f301ed1c6ab9f4f162be123941014381p@chr4:175842470..175842486, -
1.55e-98FFCP PHASE2:Hg19::chr21:47278815..47278834,+#_f301ed1c6ab9f4f162be123941014381p6@PCBP3
1.55e-98FFCP PHASE2:Hg19::chr8:75251775..75251785,+#_f301ed1c6ab9f4f162be123941014381p@chr8:75251775..75251785, +
1.55e-98FFCP PHASE2:Hg19::chr8:51970952..51970959,+#_f301ed1c6ab9f4f162be123941014381p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE1:Hg19::chr2:146687090..146687095,+#_f301ed1c6ab9f4f162be123941014381p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_f301ed1c6ab9f4f162be123941014381p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_f301ed1c6ab9f4f162be123941014381-, p@chr9:4544914..4544917
1.55e-98FFCP PHASE1:Hg19::chr7:38287827..38287832,-#_f301ed1c6ab9f4f162be123941014381-, p@chr7:38287827..38287832
1.55e-98FFCP PHASE1:Hg19::chr7:117926347..117926353,-#_f301ed1c6ab9f4f162be123941014381p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr5:24272119..24272147,-#_f301ed1c6ab9f4f162be123941014381p@chr5:24272119..24272147, -
1.55e-98FFCP PHASE1:Hg19::chr15:69972162..69972169,+#_f301ed1c6ab9f4f162be123941014381p@chr15:69972162..69972169, +
1.55e-98FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_f301ed1c6ab9f4f162be123941014381p1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr9:87797549..87797564,+#_f301ed1c6ab9f4f162be123941014381p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE2:Hg19::chr3:192598433..192598481,-#_f301ed1c6ab9f4f162be123941014381p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_f301ed1c6ab9f4f162be123941014381p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_f301ed1c6ab9f4f162be123941014381p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE2:Hg19::chr4:105805755..105805761,+#_f301ed1c6ab9f4f162be123941014381p@chr4:105805755..105805761, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_f301ed1c6ab9f4f162be123941014381p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_f301ed1c6ab9f4f162be123941014381p@chr2:141989111..141989114, -
1.55e-98FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_f301ed1c6ab9f4f162be123941014381-, p@chr8:67519931..67519935
1.55e-98FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_f301ed1c6ab9f4f162be123941014381p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_f301ed1c6ab9f4f162be123941014381p6@PCBP3
1.55e-98FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_f301ed1c6ab9f4f162be123941014381p@chr4:133657589..133657598, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_f301ed1c6ab9f4f162be123941014381p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE1:Hg19::chr7:19479837..19479844,+#_f301ed1c6ab9f4f162be123941014381p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_f301ed1c6ab9f4f162be123941014381p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_f301ed1c6ab9f4f162be123941014381p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_f301ed1c6ab9f4f162be123941014381p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_f301ed1c6ab9f4f162be123941014381p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_f301ed1c6ab9f4f162be123941014381p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr9:72117884..72117889,-#_f301ed1c6ab9f4f162be123941014381p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_f301ed1c6ab9f4f162be123941014381p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_f301ed1c6ab9f4f162be123941014381p@chr4:128884938..128884941, -
1.55e-98FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_f301ed1c6ab9f4f162be123941014381p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_f301ed1c6ab9f4f162be123941014381p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE2:Hg19::chr8:16739475..16739490,-#_f301ed1c6ab9f4f162be123941014381p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_f301ed1c6ab9f4f162be123941014381p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_f301ed1c6ab9f4f162be123941014381p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE1:Hg19::chr10:11846830..11846860,-#_f301ed1c6ab9f4f162be123941014381p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_f301ed1c6ab9f4f162be123941014381p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE2:Hg19::chr15:91989101..91989105,+#_f301ed1c6ab9f4f162be123941014381p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_f301ed1c6ab9f4f162be123941014381p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_f301ed1c6ab9f4f162be123941014381p2@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_f301ed1c6ab9f4f162be123941014381p@chr22:46041912..46041915, +