Personal tools

CL:0000818

From FANTOM5_SSTAR

Jump to: navigation, search
Name:transitional stage B cell
Namespace:FANTOM
Definition:"An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12810111]
Synonyms: "T1 B cell" NARROW []
"T2 B cell" NARROW []
"T3 B cell" NARROW []
"transitional stage B lymphocyte" EXACT []
"transitional stage B-cell" EXACT []
"transitional stage B-lymphocyte" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000236(B cell)
develops_from:CL:0000816(immature B cell)



Children


disjoint from:CL:0000785 (mature B cell)
develops from:CL:0000785 (mature B cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000818 (transitional stage B cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr5:114291872..114291873,+#_0840a092d77f3990a2866b109d5efc93p@chr5:114291872..114291873, +
1.55e-98FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_0840a092d77f3990a2866b109d5efc93p@chr4:8046897..8046900, +
1.55e-98FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_0840a092d77f3990a2866b109d5efc93p9@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr12:8808206..8808209,-#_0840a092d77f3990a2866b109d5efc93p@chr12:8808206..8808209, -
1.55e-98FFCP PHASE2:Hg19::chr12:122462770..122462775,+#_0840a092d77f3990a2866b109d5efc93p@chr12:122462770..122462775, +
1.55e-98FFCP PHASE2:Hg19::chr17:76471163..76471166,+#_0840a092d77f3990a2866b109d5efc93p@chr17:76471163..76471166, +
1.55e-98FFCP PHASE2:Hg19::chr2:77581116..77581120,-#_0840a092d77f3990a2866b109d5efc93p@chr2:77581116..77581120, -
1.55e-98FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20867728..20867731, -
1.55e-98FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_0840a092d77f3990a2866b109d5efc93p@chr6:166581590..166581596, +
1.55e-98FFCP PHASE1:Hg19::chr3:168337915..168337930,-#_0840a092d77f3990a2866b109d5efc93p@chr3:168337915..168337930, -
1.55e-98FFCP PHASE2:Hg19::chr22:23234780..23234786,+#_0840a092d77f3990a2866b109d5efc93+, p@chr22:23234780..23234786
1.55e-98FFCP PHASE1:Hg19::chr6:39962337..39962342,+#_0840a092d77f3990a2866b109d5efc93p@chr6:39962337..39962342, +
1.55e-98FFCP PHASE2:Hg19::chr12:8808206..8808209,-#_0840a092d77f3990a2866b109d5efc93p@chr12:8808206..8808209, -
1.55e-98FFCP PHASE2:Hg19::chr21:20752389..20752420,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20752389..20752420, -
1.55e-98FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_0840a092d77f3990a2866b109d5efc93p@chr5:88646759..88646764, +
1.55e-98FFCP PHASE2:Hg19::chr6:166581590..166581596,+#_0840a092d77f3990a2866b109d5efc93p@chr6:166581590..166581596, +
1.55e-98FFCP PHASE2:Hg19::chr1:101853882..101853891,-#_0840a092d77f3990a2866b109d5efc93p@chr1:101853882..101853891, -
1.55e-98FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_0840a092d77f3990a2866b109d5efc93p@chr3:19436672..19436686, +
1.55e-98FFCP PHASE1:Hg19::chr10:56410468..56410499,-#_0840a092d77f3990a2866b109d5efc93p@chr10:56410468..56410499, -
1.55e-98FFCP PHASE2:Hg19::chr21:20867728..20867731,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20867728..20867731, -
1.55e-98FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_0840a092d77f3990a2866b109d5efc93p@chr3:19436672..19436686, +
1.55e-98FFCP PHASE2:Hg19::chr12:117256221..117256231,+#_0840a092d77f3990a2866b109d5efc93p@chr12:117256221..117256231, +
1.55e-98FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20752617..20752622, -
1.55e-98FFCP PHASE2:Hg19::chr4:8046897..8046900,+#_0840a092d77f3990a2866b109d5efc93p@chr4:8046897..8046900, +
1.55e-98FFCP PHASE1:Hg19::chr11:26122006..26122011,-#_0840a092d77f3990a2866b109d5efc93p@chr11:26122006..26122011, -
1.55e-98FFCP PHASE1:Hg19::chr1:17349613..17349631,-#_0840a092d77f3990a2866b109d5efc93p8@SDHB
1.55e-98FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_0840a092d77f3990a2866b109d5efc93p@chr4:8046990..8046993, -
1.55e-98FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_0840a092d77f3990a2866b109d5efc93p8@SDHB
1.55e-98FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_0840a092d77f3990a2866b109d5efc93p@chr3:6686484..6686491, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466325..164466331,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466325..164466331, +
1.55e-98FFCP PHASE1:Hg19::chr2:77746775..77746779,-#_0840a092d77f3990a2866b109d5efc93p14@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr12:4313331..4313334,+#_0840a092d77f3990a2866b109d5efc93p@chr12:4313331..4313334, +
1.55e-98FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_0840a092d77f3990a2866b109d5efc93p@chr10:56410468..56410499, -
1.55e-98FFCP PHASE1:Hg19::chr4:3881462..3881469,-#_0840a092d77f3990a2866b109d5efc93p@chr4:3881462..3881469, -
1.55e-98FFCP PHASE1:Hg19::chr15:66464730..66464736,-#_0840a092d77f3990a2866b109d5efc93p@chr15:66464730..66464736, -
1.55e-98FFCP PHASE2:Hg19::chr6:164466325..164466331,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466325..164466331, +
1.55e-98FFCP PHASE2:Hg19::chr6:39962295..39962305,+#_0840a092d77f3990a2866b109d5efc93p@chr6:39962295..39962305, +
1.55e-98FFCP PHASE1:Hg19::chr5:114291872..114291873,+#_0840a092d77f3990a2866b109d5efc93p@chr5:114291872..114291873, +
1.55e-98FFCP PHASE1:Hg19::chr3:158747347..158747353,+#_0840a092d77f3990a2866b109d5efc93p@chr3:158747347..158747353, +
1.55e-98FFCP PHASE2:Hg19::chr12:40953942..40953946,+#_0840a092d77f3990a2866b109d5efc93p@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20752617..20752622, -
1.55e-98FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_0840a092d77f3990a2866b109d5efc93p@chr2:77581116..77581120, -
1.55e-98FFCP PHASE2:Hg19::chr3:178947187..178947192,+#_0840a092d77f3990a2866b109d5efc93p@chr3:178947187..178947192, +
1.55e-98FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_0840a092d77f3990a2866b109d5efc93p@chr12:117256221..117256231, +
1.55e-98FFCP PHASE1:Hg19::chr22:23234780..23234786,+#_0840a092d77f3990a2866b109d5efc93p@chr22:23234780..23234786, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046990..8046993,-#_0840a092d77f3990a2866b109d5efc93p@chr4:8046990..8046993, -
1.55e-98FFCP PHASE1:Hg19::chr11:26124040..26124064,-#_0840a092d77f3990a2866b109d5efc93p@chr11:26124040..26124064, -
1.55e-98FFCP PHASE1:Hg19::chr1:17349654..17349690,-#_0840a092d77f3990a2866b109d5efc93p6@SDHB
1.55e-98FFCP PHASE2:Hg19::chr1:17349654..17349690,-#_0840a092d77f3990a2866b109d5efc93p6@SDHB
1.55e-98FFCP PHASE1:Hg19::chr6:164466345..164466352,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466345..164466352, +
1.55e-98FFCP PHASE2:Hg19::chr3:168236611..168236612,-#_0840a092d77f3990a2866b109d5efc93p@chr3:168236611..168236612, -
1.55e-98FFCP PHASE1:Hg19::chr12:122458855..122458857,+#_0840a092d77f3990a2866b109d5efc93p16@BCL7A
1.55e-98FFCP PHASE2:Hg19::chr3:6686484..6686491,+#_0840a092d77f3990a2866b109d5efc93p@chr3:6686484..6686491, +
1.55e-98FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_0840a092d77f3990a2866b109d5efc93p@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466345..164466352, +
1.55e-98FFCP PHASE2:Hg19::chr6:39962337..39962342,+#_0840a092d77f3990a2866b109d5efc93p@chr6:39962337..39962342, +
1.55e-98FFCP PHASE2:Hg19::chr11:26122006..26122011,-#_0840a092d77f3990a2866b109d5efc93p@chr11:26122006..26122011, -
1.55e-98FFCP PHASE1:Hg19::chr6:166581265..166581274,-#_0840a092d77f3990a2866b109d5efc93p5@T
1.55e-98FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_0840a092d77f3990a2866b109d5efc93-, p@chr15:66464730..66464736
1.55e-98FFCP PHASE1:Hg19::chr9:138904824..138904829,+#_0840a092d77f3990a2866b109d5efc93p@chr9:138904824..138904829, +
1.55e-98FFCP PHASE1:Hg19::chr12:122462770..122462775,+#_0840a092d77f3990a2866b109d5efc93p@chr12:122462770..122462775, +
1.55e-98FFCP PHASE2:Hg19::chrX:89012355..89012363,+#_0840a092d77f3990a2866b109d5efc93p@chrX:89012355..89012363, +
1.55e-98FFCP PHASE1:Hg19::chr4:176353908..176353917,-#_0840a092d77f3990a2866b109d5efc93p@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_0840a092d77f3990a2866b109d5efc93p1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE1:Hg19::chr14:106829914..106829921,-#_0840a092d77f3990a2866b109d5efc93p1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE2:Hg19::chr6:166581265..166581274,-#_0840a092d77f3990a2866b109d5efc93p5@T
1.55e-98FFCP PHASE1:Hg19::chrX:89012355..89012363,+#_0840a092d77f3990a2866b109d5efc93p@chrX:89012355..89012363, +
1.55e-98FFCP PHASE1:Hg19::chr12:40991131..40991149,+#_0840a092d77f3990a2866b109d5efc93p@chr12:40991131..40991149, +
1.55e-98FFCP PHASE1:Hg19::chr17:76471146..76471155,+#_0840a092d77f3990a2866b109d5efc93p@chr17:76471146..76471155, +
1.55e-98FFCP PHASE2:Hg19::chr12:4313331..4313334,+#_0840a092d77f3990a2866b109d5efc93p@chr12:4313331..4313334, +
1.55e-98FFCP PHASE2:Hg19::chr7:86415255..86415288,+#_0840a092d77f3990a2866b109d5efc93p@chr7:86415255..86415288, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466441..164466449,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_0840a092d77f3990a2866b109d5efc93p@chr3:79363599..79363606, +
1.55e-98FFCP PHASE2:Hg19::chr3:168337915..168337930,-#_0840a092d77f3990a2866b109d5efc93p@chr3:168337915..168337930, -
1.55e-98FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_0840a092d77f3990a2866b109d5efc93p@chr5:88646759..88646764, +
1.55e-98FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_0840a092d77f3990a2866b109d5efc93-, p@chrX:42727038..42727047
1.55e-98FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_0840a092d77f3990a2866b109d5efc93p@chr3:158747347..158747353, +
1.55e-98FFCP PHASE1:Hg19::chr3:178947187..178947192,+#_0840a092d77f3990a2866b109d5efc93p@chr3:178947187..178947192, +
1.55e-98FFCP PHASE2:Hg19::chr4:176358284..176358287,-#_0840a092d77f3990a2866b109d5efc93p@chr4:176358284..176358287, -
1.55e-98FFCP PHASE1:Hg19::chr17:76475275..76475285,-#_0840a092d77f3990a2866b109d5efc93p@chr17:76475275..76475285, -
1.55e-98FFCP PHASE2:Hg19::chr6:164466441..164466449,+#_0840a092d77f3990a2866b109d5efc93p@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr2:77746703..77746711,-#_0840a092d77f3990a2866b109d5efc93p9@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr3:79363599..79363606,+#_0840a092d77f3990a2866b109d5efc93p@chr3:79363599..79363606, +
1.55e-98FFCP PHASE2:Hg19::chr11:26124040..26124064,-#_0840a092d77f3990a2866b109d5efc93-, p@chr11:26124040..26124064
1.55e-98FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_0840a092d77f3990a2866b109d5efc93p@chr14:53594794..53594799, +
1.55e-98FFCP PHASE1:Hg19::chr21:20747453..20747465,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20747453..20747465, -
1.55e-98FFCP PHASE1:Hg19::chr7:86415255..86415288,+#_0840a092d77f3990a2866b109d5efc93p@chr7:86415255..86415288, +
1.55e-98FFCP PHASE1:Hg19::chr4:176358284..176358287,-#_0840a092d77f3990a2866b109d5efc93p@chr4:176358284..176358287, -
1.55e-98FFCP PHASE2:Hg19::chr8:128270027..128270033,-#_0840a092d77f3990a2866b109d5efc93p@chr8:128270027..128270033, -
1.55e-98FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_0840a092d77f3990a2866b109d5efc93p@chr14:53594794..53594799, +
1.55e-98FFCP PHASE1:Hg19::chr17:76471163..76471166,+#_0840a092d77f3990a2866b109d5efc93p@chr17:76471163..76471166, +
1.55e-98FFCP PHASE2:Hg19::chr17:76471146..76471155,+#_0840a092d77f3990a2866b109d5efc93p@chr17:76471146..76471155, +
1.55e-98FFCP PHASE2:Hg19::chr4:3881462..3881469,-#_0840a092d77f3990a2866b109d5efc93p@chr4:3881462..3881469, -
1.55e-98FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_0840a092d77f3990a2866b109d5efc93p@chr6:166581583..166581586, +
1.55e-98FFCP PHASE1:Hg19::chr3:168236611..168236612,-#_0840a092d77f3990a2866b109d5efc93p@chr3:168236611..168236612, -
1.55e-98FFCP PHASE1:Hg19::chr8:128270027..128270033,-#_0840a092d77f3990a2866b109d5efc93p@chr8:128270027..128270033, -
1.55e-98FFCP PHASE1:Hg19::chr6:39962295..39962305,+#_0840a092d77f3990a2866b109d5efc93p@chr6:39962295..39962305, +
1.55e-98FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_0840a092d77f3990a2866b109d5efc93p@chrX:42727038..42727047, -
1.55e-98FFCP PHASE2:Hg19::chr21:20747453..20747465,-#_0840a092d77f3990a2866b109d5efc93p@chr21:20747453..20747465, -
1.55e-98FFCP PHASE2:Hg19::chr6:166581583..166581586,+#_0840a092d77f3990a2866b109d5efc93p@chr6:166581583..166581586, +