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CL:0000893

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Name:thymocyte
Namespace:FANTOM
Definition:"An immature T cell located in the thymus." [GO_REF:0000031, GOC:add, GOC:tfm, PMID:12415312]
Xrefs:
links:

BTO:0001372
FMA:72202

XAO:0003159
Synonyms: "immature T cell" BROAD []
"immature T lymphocyte" BROAD []
"immature T-cell" BROAD []
"immature T-lymphocyte" BROAD []
"thymic lymphocyte" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002420(immature T cell)
part_of:UBERON:0002370(thymus)



Children


is a:CL:0000805 (immature single positive thymocyte),CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0002489 (double negative thymocyte)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000893 (thymocyte), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_0204c4e49be19bc7088293686d187f76p@chr2:162762361..162762364, +
3.29e-195FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_0204c4e49be19bc7088293686d187f76p@chr2:162762361..162762364, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:141989111..141989114, -
1.55e-98FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE1:Hg19::chr21:47278815..47278834,+#_0b853c5c789b2db9ac392b1aea3ec3c8p6@PCBP3
1.55e-98FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:133657589..133657598, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022368..67022374,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_0b853c5c789b2db9ac392b1aea3ec3c8-, p@chr8:67519931..67519935
1.55e-98FFCP PHASE1:Hg19::chr7:19479837..19479844,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE2:Hg19::chr9:72117884..72117889,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:128884938..128884941, -
1.55e-98FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE2:Hg19::chr8:16739475..16739490,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE2:Hg19::chr15:91989101..91989105,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr15:92006659..92006679,+#_0b853c5c789b2db9ac392b1aea3ec3c8p2@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_0b853c5c789b2db9ac392b1aea3ec3c8p3@uc001weo.2
1.55e-98FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE2:Hg19::chr4:133657589..133657598,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:133657589..133657598, -
1.55e-98FFCP PHASE1:Hg19::chr16:67022522..67022529,+#_0b853c5c789b2db9ac392b1aea3ec3c8p12@CES4A
1.55e-98FFCP PHASE2:Hg19::chr14:22962827..22962830,+#_0b853c5c789b2db9ac392b1aea3ec3c8p3@uc001weo.2
1.55e-98FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE2:Hg19::chr2:141989111..141989114,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:141989111..141989114, -
1.55e-98FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_0b853c5c789b2db9ac392b1aea3ec3c8+, p@chr3:152204326..152204345
1.55e-98FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE1:Hg19::chr6:128263833..128263838,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr6:128263833..128263838, -
1.55e-98FFCP PHASE2:Hg19::chr13:49078833..49078841,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr13:49078833..49078841, -
1.55e-98FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE1:Hg19::chr4:105805755..105805761,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:105805755..105805761, +
1.55e-98FFCP PHASE2:Hg19::chr10:11846830..11846860,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE2:Hg19::chr17:14103251..14103258,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr17:14103251..14103258, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE1:Hg19::chr4:175842537..175842553,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842537..175842553,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_0b853c5c789b2db9ac392b1aea3ec3c8p1@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE2:Hg19::chr4:134707420..134707442,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE2:Hg19::chr16:67022522..67022529,+#_0b853c5c789b2db9ac392b1aea3ec3c8p12@CES4A
1.55e-98FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE2:Hg19::chr2:202521027..202521058,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE1:Hg19::chr8:75251775..75251785,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:75251775..75251785, +
1.55e-98FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr10:11846830..11846860,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE1:Hg19::chr1:200990231..200990238,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE2:Hg19::chr6:128263833..128263838,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr6:128263833..128263838, -
1.55e-98FFCP PHASE1:Hg19::chr9:87797549..87797564,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE1:Hg19::chr17:14101134..14101143,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707420..134707442,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE1:Hg19::chr13:49078833..49078841,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr13:49078833..49078841, -
1.55e-98FFCP PHASE1:Hg19::chr8:16739475..16739490,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_0b853c5c789b2db9ac392b1aea3ec3c8p2@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr3:152204326..152204345,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr3:152204326..152204345, +
1.55e-98FFCP PHASE2:Hg19::chr7:117926347..117926353,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE2:Hg19::chrX:133321044..133321049,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE1:Hg19::chr2:162762231..162762234,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE1:Hg19::chr8:51970952..51970959,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE2:Hg19::chr2:146998057..146998070,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE1:Hg19::chr9:4544914..4544917,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:4544914..4544917, -
1.55e-98FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr15:69972162..69972169, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842470..175842486,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175842470..175842486, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE2:Hg19::chr9:116857558..116857566,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE2:Hg19::chr8:114877856..114877881,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr16:67022368..67022374,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE1:Hg19::chr17:14103251..14103258,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr17:14103251..14103258, +
1.55e-98FFCP PHASE1:Hg19::chr2:202521027..202521058,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE1:Hg19::chr4:134707449..134707458,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr4:2428062..2428080,+#_0b853c5c789b2db9ac392b1aea3ec3c8p1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr13:24623546..24623587,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr15:92006720..92006726,+#_0b853c5c789b2db9ac392b1aea3ec3c8p1@uc002bqw.2
1.55e-98FFCP PHASE1:Hg19::chr4:128884938..128884941,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:128884938..128884941, -
1.55e-98FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr5:24272119..24272147, -
1.55e-98FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE1:Hg19::chr2:146687090..146687095,+#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_0b853c5c789b2db9ac392b1aea3ec3c8p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_0b853c5c789b2db9ac392b1aea3ec3c8-, p@chr9:4544914..4544917