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CL:0002250

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Name:intestinal crypt stem cell
Namespace:FANTOM
Definition:"A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651]
Xrefs:
links:
FMA:63379
Synonyms: "stem cell of intestinal crypt of lieberkuhn" EXACT []
Created by:tmeehan
Creation date:2010-09-08T09:21:22Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000048(multi fate stem cell),CL:0002563(intestinal epithelial cell)
part_of:UBERON:0001983(crypt of Lieberkuhn)



Children


derives from:FF:0000079 (mouse Lgr5-positive intestinal epithelial stem cell sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
  • 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
  • 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)

Mouse (Mus musculus)

  • 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
  • 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
  • 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002250 (intestinal crypt stem cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr11:42971307..42971324,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr11:42971307..42971324, -
1.58e-86FFCP PHASE2:Mm9::chr1:108091016..108091019,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr1:108091016..108091019, +
1.58e-86FFCP PHASE2:Mm9::chr16:96145917..96145922,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr16:96145917..96145922, +
1.58e-86FFCP PHASE1:Mm9::chr9:111364133..111364137,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr9:111364133..111364137, -
1.58e-86FFCP PHASE1:Mm9::chr14:80422367..80422374,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr14:80422367..80422374, +
1.58e-86FFCP PHASE1:Mm9::chr8:22371949..22371957,-#_a1c16c0c9c6bdce3507bcb652be2e972p1@ENSMUST00000117139, p1@ENSMUST00000166375
1.58e-86FFCP PHASE1:Mm9::chr14:78304699..78304709,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr14:78304699..78304709, +
1.58e-86FFCP PHASE1:Mm9::chr5:65018091..65018099,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr5:65018091..65018099, +
1.58e-86FFCP PHASE2:Mm9::chr13:102248906..102248908,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr13:102248906..102248908, +
1.58e-86FFCP PHASE2:Mm9::chr2:155378820..155378826,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr2:155378820..155378826, -
1.58e-86FFCP PHASE2:Mm9::chr8:22371949..22371957,-#_a1c16c0c9c6bdce3507bcb652be2e972p1@ENSMUST00000117139, p1@ENSMUST00000166375
1.58e-86FFCP PHASE2:Mm9::chr14:78304699..78304709,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr14:78304699..78304709, +
1.58e-86FFCP PHASE2:Mm9::chr1:182877714..182877715,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr1:182877714..182877715, -
1.58e-86FFCP PHASE1:Mm9::chr1:182877714..182877715,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr1:182877714..182877715, -
1.58e-86FFCP PHASE2:Mm9::chr14:80422367..80422374,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr14:80422367..80422374, +
1.58e-86FFCP PHASE1:Mm9::chr16:96145917..96145922,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr16:96145917..96145922, +
1.58e-86FFCP PHASE1:Mm9::chr1:108091016..108091019,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr1:108091016..108091019, +
1.58e-86FFCP PHASE1:Mm9::chr11:42971307..42971324,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr11:42971307..42971324, -
1.58e-86FFCP PHASE2:Mm9::chr9:111364133..111364137,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr9:111364133..111364137, -
1.58e-86FFCP PHASE1:Mm9::chr2:155378820..155378826,-#_a1c16c0c9c6bdce3507bcb652be2e972p@chr2:155378820..155378826, -
1.58e-86FFCP PHASE2:Mm9::chr5:65018091..65018099,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr5:65018091..65018099, +
1.58e-86FFCP PHASE1:Mm9::chr13:102248906..102248908,+#_a1c16c0c9c6bdce3507bcb652be2e972p@chr13:102248906..102248908, +
1.33e-65FFCP PHASE1:Mm9::chr14:102240879..102240884,-#_ef8d0028d147ceb04dbf99b078c4499dp@chr14:102240879..102240884, -
1.33e-65FFCP PHASE1:Mm9::chr8:128443042..128443049,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr8:128443042..128443049, +
1.33e-65FFCP PHASE2:Mm9::chr5:3270374..3270385,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr5:3270374..3270385, +
1.33e-65FFCP PHASE2:Mm9::chr14:102240879..102240884,-#_ef8d0028d147ceb04dbf99b078c4499dp@chr14:102240879..102240884, -
1.33e-65FFCP PHASE2:Mm9::chr5:36717523..36717532,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr5:36717523..36717532, +
1.33e-65FFCP PHASE1:Mm9::chr5:3270374..3270385,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr5:3270374..3270385, +
1.33e-65FFCP PHASE1:Mm9::chr5:36717523..36717532,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr5:36717523..36717532, +
1.33e-65FFCP PHASE2:Mm9::chr8:128443042..128443049,+#_ef8d0028d147ceb04dbf99b078c4499dp@chr8:128443042..128443049, +
6.04e-65FFCP PHASE2:Mm9::chr1:75125217..75125229,-#_a7dea70183b0c67abd7c63cf9d79908dp@chr1:75125217..75125229, -
6.04e-65FFCP PHASE1:Mm9::chr1:75125217..75125229,-#_a7dea70183b0c67abd7c63cf9d79908dp@chr1:75125217..75125229, -
3.28e-58FFCP PHASE1:Mm9::chr9:66889535..66889538,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr9:66889535..66889538, +
3.28e-58FFCP PHASE1:Mm9::chr7:106310729..106310733,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr7:106310729..106310733, -
3.28e-58FFCP PHASE2:Mm9::chr2:26357393..26357396,+#_865fc6f1f3d26c989127a9eb84c90f83+, p@chr2:26357393..26357396
3.28e-58FFCP PHASE1:Mm9::chr2:26357393..26357396,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr2:26357393..26357396, +
3.28e-58FFCP PHASE2:Mm9::chr6:125545038..125545041,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr6:125545038..125545041, -
3.28e-58FFCP PHASE1:Mm9::chr6:125545038..125545041,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr6:125545038..125545041, -
3.28e-58FFCP PHASE1:Mm9::chr2:157917526..157917531,-#_865fc6f1f3d26c989127a9eb84c90f83p3@2010009K17Rik
3.28e-58FFCP PHASE2:Mm9::chr15:78517622..78517624,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr15:78517622..78517624, +
3.28e-58FFCP PHASE1:Mm9::chr1:138117307..138117311,+#_865fc6f1f3d26c989127a9eb84c90f83+, p@chr1:138117307..138117311
3.28e-58FFCP PHASE2:Mm9::chr1:138117307..138117311,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr1:138117307..138117311, +
3.28e-58FFCP PHASE2:Mm9::chr7:29588878..29588882,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr7:29588878..29588882, -
3.28e-58FFCP PHASE1:Mm9::chr15:78517622..78517624,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr15:78517622..78517624, +
3.28e-58FFCP PHASE1:Mm9::chr8:87181847..87181850,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr8:87181847..87181850, +
3.28e-58FFCP PHASE2:Mm9::chr9:66889535..66889538,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr9:66889535..66889538, +
3.28e-58FFCP PHASE2:Mm9::chr8:87181847..87181850,+#_865fc6f1f3d26c989127a9eb84c90f83p@chr8:87181847..87181850, +
3.28e-58FFCP PHASE1:Mm9::chr7:29588878..29588882,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr7:29588878..29588882, -
3.28e-58FFCP PHASE2:Mm9::chr7:106310729..106310733,-#_865fc6f1f3d26c989127a9eb84c90f83p@chr7:106310729..106310733, -
3.28e-58FFCP PHASE2:Mm9::chr2:157917526..157917531,-#_865fc6f1f3d26c989127a9eb84c90f83p3@2010009K17Rik
4.9e-53FFCP PHASE1:Mm9::chr12:83223787..83223791,-#_4f638c6126db21535cf8e4252a174727p@chr12:83223787..83223791, -
4.9e-53FFCP PHASE1:Mm9::chr3:126314780..126314810,-#_4f638c6126db21535cf8e4252a174727-, p@chr3:126314780..126314810
4.9e-53FFCP PHASE2:Mm9::chr14:80421016..80421024,+#_4f638c6126db21535cf8e4252a174727p@chr14:80421016..80421024, +
4.9e-53FFCP PHASE2:Mm9::chr3:126314780..126314810,-#_4f638c6126db21535cf8e4252a174727p@chr3:126314780..126314810, -
4.9e-53FFCP PHASE2:Mm9::chr12:83223787..83223791,-#_4f638c6126db21535cf8e4252a174727p@chr12:83223787..83223791, -
4.9e-53FFCP PHASE1:Mm9::chr14:80421016..80421024,+#_4f638c6126db21535cf8e4252a174727p@chr14:80421016..80421024, +
7.35e-53FFCP PHASE2:Mm9::chr2:72314053..72314057,+#_a6f262c4e3d0f7c9e2ea92131d764939p5@Cdca7
7.35e-53FFCP PHASE1:Mm9::chr2:72314053..72314057,+#_a6f262c4e3d0f7c9e2ea92131d764939p5@Cdca7
7.35e-53FFCP PHASE1:Mm9::chr14:80422038..80422047,+#_a6f262c4e3d0f7c9e2ea92131d764939p@chr14:80422038..80422047, +
7.35e-53FFCP PHASE2:Mm9::chr14:80422038..80422047,+#_a6f262c4e3d0f7c9e2ea92131d764939p@chr14:80422038..80422047, +
1.1e-52FFCP PHASE1:Mm9::chr5:32270354..32270364,-#_8f48c21a0f66c2fc21257c1777ba4967p@chr5:32270354..32270364, -
1.1e-52FFCP PHASE2:Mm9::chr5:32270354..32270364,-#_8f48c21a0f66c2fc21257c1777ba4967p@chr5:32270354..32270364, -
1.65e-52FFCP PHASE2:Mm9::chr1:189485998..189486010,+#_2ecbb6dc76a5516d82f323335e62bb4ap@chr1:189485998..189486010, +
1.65e-52FFCP PHASE1:Mm9::chr1:189485998..189486010,+#_2ecbb6dc76a5516d82f323335e62bb4ap@chr1:189485998..189486010, +
1.18e-44FFCP PHASE2:Mm9::chr4:138753652..138753654,+#_bc02ba793babd3af8995ab7ded80153ap@chr4:138753652..138753654, +
1.18e-44FFCP PHASE2:Mm9::chr12:86771033..86771037,-#_bc02ba793babd3af8995ab7ded80153ap@chr12:86771033..86771037, -
1.18e-44FFCP PHASE2:Mm9::chr5:29805170..29805178,-#_bc02ba793babd3af8995ab7ded80153ap2@Mnx1
1.18e-44FFCP PHASE2:Mm9::chr2:71588140..71588152,-#_bc02ba793babd3af8995ab7ded80153ap1@ENSMUST00000164635, p1@uc008kaz.1
1.18e-44FFCP PHASE1:Mm9::chr12:86771033..86771037,-#_bc02ba793babd3af8995ab7ded80153ap@chr12:86771033..86771037, -
1.18e-44FFCP PHASE1:Mm9::chr5:29805170..29805178,-#_bc02ba793babd3af8995ab7ded80153ap2@Mnx1
1.18e-44FFCP PHASE1:Mm9::chr4:138753652..138753654,+#_bc02ba793babd3af8995ab7ded80153ap@chr4:138753652..138753654, +
1.18e-44FFCP PHASE1:Mm9::chr2:71588140..71588152,-#_bc02ba793babd3af8995ab7ded80153ap1@ENSMUST00000164635, p1@uc008kaz.1
1.66e-44FFCP PHASE2:Mm9::chr19:47655378..47655382,-#_45eeb1e85c6e3a7d7d430abf06b93d58p@chr19:47655378..47655382, -
1.66e-44FFCP PHASE1:Mm9::chr19:47655378..47655382,-#_45eeb1e85c6e3a7d7d430abf06b93d58p@chr19:47655378..47655382, -
1.66e-44FFCP PHASE1:Mm9::chr2:146839658..146839668,+#_45eeb1e85c6e3a7d7d430abf06b93d58p@chr2:146839658..146839668, +
1.66e-44FFCP PHASE2:Mm9::chr2:146839658..146839668,+#_45eeb1e85c6e3a7d7d430abf06b93d58p@chr2:146839658..146839668, +
2.33e-44FFCP PHASE1:Mm9::chr19:24589295..24589302,-#_4a2ba7c6555733dcf1156c5ce3a65a61p@chr19:24589295..24589302, -
2.33e-44FFCP PHASE2:Mm9::chr19:24589295..24589302,-#_4a2ba7c6555733dcf1156c5ce3a65a61p@chr19:24589295..24589302, -
1.7e-39FFCP PHASE2:Mm9::chr11:80603365..80603366,-#_ff305b8118660627391fbc9538eed4f4p@chr11:80603365..80603366, -
1.7e-39FFCP PHASE2:Mm9::chr7:59266075..59266077,+#_ff305b8118660627391fbc9538eed4f4p@chr7:59266075..59266077, +
1.7e-39FFCP PHASE1:Mm9::chr7:113260814..113260838,-#_ff305b8118660627391fbc9538eed4f4p@chr7:113260814..113260838, -
1.7e-39FFCP PHASE1:Mm9::chr7:59266075..59266077,+#_ff305b8118660627391fbc9538eed4f4p@chr7:59266075..59266077, +
1.7e-39FFCP PHASE2:Mm9::chr11:115705295..115705300,-#_ff305b8118660627391fbc9538eed4f4p@chr11:115705295..115705300, -
1.7e-39FFCP PHASE2:Mm9::chr11:75825636..75825637,+#_ff305b8118660627391fbc9538eed4f4p@chr11:75825636..75825637, +
1.7e-39FFCP PHASE1:Mm9::chr11:75825636..75825637,+#_ff305b8118660627391fbc9538eed4f4p@chr11:75825636..75825637, +
1.7e-39FFCP PHASE2:Mm9::chr15:78675302..78675304,-#_ff305b8118660627391fbc9538eed4f4-, p@chr15:78675302..78675304
1.7e-39FFCP PHASE1:Mm9::chr3:108115823..108115848,+#_ff305b8118660627391fbc9538eed4f4p@chr3:108115823..108115848, +
1.7e-39FFCP PHASE1:Mm9::chr11:80603365..80603366,-#_ff305b8118660627391fbc9538eed4f4p@chr11:80603365..80603366, -
1.7e-39FFCP PHASE2:Mm9::chr1:137077463..137077471,-#_ff305b8118660627391fbc9538eed4f4p@chr1:137077463..137077471, -
1.7e-39FFCP PHASE2:Mm9::chr7:113260814..113260838,-#_ff305b8118660627391fbc9538eed4f4p@chr7:113260814..113260838, -
1.7e-39FFCP PHASE1:Mm9::chr15:78675302..78675304,-#_ff305b8118660627391fbc9538eed4f4-, p@chr15:78675302..78675304
1.7e-39FFCP PHASE1:Mm9::chr11:115705295..115705300,-#_ff305b8118660627391fbc9538eed4f4p@chr11:115705295..115705300, -
1.7e-39FFCP PHASE1:Mm9::chr1:137077463..137077471,-#_ff305b8118660627391fbc9538eed4f4p@chr1:137077463..137077471, -
1.7e-39FFCP PHASE2:Mm9::chr3:108115823..108115848,+#_ff305b8118660627391fbc9538eed4f4p@chr3:108115823..108115848, +
4.15e-39FFCP PHASE2:Mm9::chr18:6136418..6136425,+#_7b236f63f1e98f06170b9699c238f396p@chr18:6136418..6136425, +
4.15e-39FFCP PHASE1:Mm9::chr7:51170510..51170517,+#_7b236f63f1e98f06170b9699c238f396p@chr7:51170510..51170517, +
4.15e-39FFCP PHASE1:Mm9::chr18:6136418..6136425,+#_7b236f63f1e98f06170b9699c238f396p@chr18:6136418..6136425, +
4.15e-39FFCP PHASE2:Mm9::chr7:51170510..51170517,+#_7b236f63f1e98f06170b9699c238f396p@chr7:51170510..51170517, +
1.17e-38FFCP PHASE2:Mm9::chr17:14389709..14389718,-#_6d94c6cbe2646f146f5d9baaea4d5fadp@chr17:14389709..14389718, -
1.17e-38FFCP PHASE2:Mm9::chr17:14386739..14386748,+#_6d94c6cbe2646f146f5d9baaea4d5fadp@chr17:14386739..14386748, +