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CL:0002568

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Name:mesenchymal stem cell of Wharton's jelly
Namespace:FANTOM
Definition:"A mesenchymal stem cell that is part of Wharton's jelly." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-01T09:51:18Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002569(mesenchymal stem cell of umbilical cord)



Children


derives from:FF:0000095 (human mesenchymal stem cell of Wharton's jelly sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002568 (mesenchymal stem cell of Wharton's jelly), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.23e-66FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_3a855a789b135de778fa20dea1eb0b62p@chr4:120446538..120446544, -
1.23e-66FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_3a855a789b135de778fa20dea1eb0b62p@chr4:120446538..120446544, -
2.42e-50FFCP PHASE2:Hg19::chr21:16209394..16209398,-#_367e438629250f03be7b81d92cd3b22ep@chr21:16209394..16209398, -
2.42e-50FFCP PHASE1:Hg19::chr21:16209394..16209398,-#_367e438629250f03be7b81d92cd3b22ep@chr21:16209394..16209398, -
3.99e-50FFCP PHASE1:Hg19::chr13:97775142..97775154,+#_2e812960bc28ffb1276f31d67ad8a5cfp@chr13:97775142..97775154, +
3.99e-50FFCP PHASE2:Hg19::chr13:97775142..97775154,+#_2e812960bc28ffb1276f31d67ad8a5cfp@chr13:97775142..97775154, +
6.58e-50FFCP PHASE2:Hg19::chr2:232030419..232030426,+#_21e28941424b51f6157716f5e0a2d82ap@chr2:232030419..232030426, +
6.58e-50FFCP PHASE1:Hg19::chr2:232030419..232030426,+#_21e28941424b51f6157716f5e0a2d82ap@chr2:232030419..232030426, +
9.91e-41FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_027e3dd405245ebc2166dc60774f49f9p25@COL12A1
9.91e-41FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_027e3dd405245ebc2166dc60774f49f9p25@COL12A1
2.21e-40FFCP PHASE2:Hg19::chr10:72576503..72576516,+#_40fb720da0d3bc418f82d2d992a4065ap11@SGPL1
2.21e-40FFCP PHASE1:Hg19::chr1:210612925..210612933,+#_40fb720da0d3bc418f82d2d992a4065ap15@HHAT
2.21e-40FFCP PHASE2:Hg19::chr1:210612925..210612933,+#_40fb720da0d3bc418f82d2d992a4065ap15@HHAT
2.21e-40FFCP PHASE1:Hg19::chr10:72576503..72576516,+#_40fb720da0d3bc418f82d2d992a4065ap11@SGPL1
3.3e-40FFCP PHASE1:Hg19::chr21:36749984..36749990,-#_4e616664bb06286eccf663183da8dea4p@chr21:36749984..36749990, -
3.3e-40FFCP PHASE2:Hg19::chr21:36749984..36749990,-#_4e616664bb06286eccf663183da8dea4p@chr21:36749984..36749990, -
1.84e-34FFCP PHASE2:Hg19::chr13:28896641..28896653,-#_caaaef4965a3a888024115a9b9bd3f2ep5@FLT1
1.84e-34FFCP PHASE1:Hg19::chr13:28896641..28896653,-#_caaaef4965a3a888024115a9b9bd3f2ep5@FLT1
2.58e-34FFCP PHASE2:Hg19::chr3:8989081..8989115,-#_403068b9b9c68b863e30c4b8a2855cacp@chr3:8989081..8989115, -
2.58e-34FFCP PHASE1:Hg19::chr3:8989081..8989115,-#_403068b9b9c68b863e30c4b8a2855cacp@chr3:8989081..8989115, -
9.85e-34FFCP PHASE2:Hg19::chr13:29293037..29293044,-#_ecdf37bbc912b0475714b5ffa5b8aaa8p7@SLC46A3
9.85e-34FFCP PHASE1:Hg19::chr13:29293037..29293044,-#_ecdf37bbc912b0475714b5ffa5b8aaa8p7@SLC46A3
9.99e-30FFCP PHASE2:Hg19::chr3:123383412..123383423,-#_af9966ba54946c8ece68a87c491a73d2p60@MYLK
9.99e-30FFCP PHASE1:Hg19::chr4:90332350..90332360,+#_af9966ba54946c8ece68a87c491a73d2p@chr4:90332350..90332360, +
9.99e-30FFCP PHASE2:Hg19::chr4:90332350..90332360,+#_af9966ba54946c8ece68a87c491a73d2p@chr4:90332350..90332360, +
9.99e-30FFCP PHASE1:Hg19::chr3:123383412..123383423,-#_af9966ba54946c8ece68a87c491a73d2p60@MYLK
2.78e-26FFCP PHASE2:Hg19::chr2:232030473..232030487,+#_2dd92dd95c3e4cc40df9dab8c575e43dp@chr2:232030473..232030487, +
2.78e-26FFCP PHASE1:Hg19::chr2:232030473..232030487,+#_2dd92dd95c3e4cc40df9dab8c575e43dp@chr2:232030473..232030487, +
5.93e-26FFCP PHASE2:Hg19::chr10:127738503..127738517,-#_e5dca6656029e40bd44b50af7dda978dp@chr10:127738503..127738517, -
5.93e-26FFCP PHASE1:Hg19::chr10:127738503..127738517,-#_e5dca6656029e40bd44b50af7dda978dp@chr10:127738503..127738517, -
7.62e-26FFCP PHASE1:Hg19::chr9:29213900..29213911,-#_4aacef89da6a1716222556e4895fbbd8p@chr9:29213900..29213911, -
7.62e-26FFCP PHASE2:Hg19::chr9:29213900..29213911,-#_4aacef89da6a1716222556e4895fbbd8p@chr9:29213900..29213911, -
1.26e-25FFCP PHASE1:Hg19::chr18:19756906..19756919,+#_bc9d5921a77cce0655e71ecd2a6a2583p@chr18:19756906..19756919, +
1.26e-25FFCP PHASE2:Hg19::chr18:19756906..19756919,+#_bc9d5921a77cce0655e71ecd2a6a2583p@chr18:19756906..19756919, +
2.1e-23FFCP PHASE1:Hg19::chr5:81654586..81654599,+#_a038f7d0a2fbc56185f865ef6c94d4e3p@chr5:81654586..81654599, +
2.1e-23FFCP PHASE2:Hg19::chr18:25545945..25545954,-#_a038f7d0a2fbc56185f865ef6c94d4e3p@chr18:25545945..25545954, -
2.1e-23FFCP PHASE2:Hg19::chr5:81654586..81654599,+#_a038f7d0a2fbc56185f865ef6c94d4e3p@chr5:81654586..81654599, +
2.1e-23FFCP PHASE1:Hg19::chr18:25545945..25545954,-#_a038f7d0a2fbc56185f865ef6c94d4e3p@chr18:25545945..25545954, -
5.13e-23FFCP PHASE1:Hg19::chr4:157298235..157298246,-#_ae8d29851d3225b1c499b84f10f276ffp@chr4:157298235..157298246, -
5.13e-23FFCP PHASE2:Hg19::chr4:157298235..157298246,-#_ae8d29851d3225b1c499b84f10f276ffp@chr4:157298235..157298246, -
5.13e-23FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_ae8d29851d3225b1c499b84f10f276ffp4@ENST00000443508
5.13e-23FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_ae8d29851d3225b1c499b84f10f276ffp4@ENST00000443508
6.4e-23FFCP PHASE2:Hg19::chr7:134345388..134345395,+#_1650ef6cf39043645f2fca7d5cd76cbap7@BPGM
6.4e-23FFCP PHASE1:Hg19::chr7:134345388..134345395,+#_1650ef6cf39043645f2fca7d5cd76cbap7@BPGM
1.53e-21FFCP PHASE1:Hg19::chr9:93271212..93271237,-#_fcd42226fec416ffec4443afee4b9ba9p@chr9:93271212..93271237, -
1.53e-21FFCP PHASE1:Hg19::chrX:8472595..8472610,-#_fcd42226fec416ffec4443afee4b9ba9p@chrX:8472595..8472610, -
1.53e-21FFCP PHASE2:Hg19::chrX:8472595..8472610,-#_fcd42226fec416ffec4443afee4b9ba9p@chrX:8472595..8472610, -
1.53e-21FFCP PHASE2:Hg19::chr9:93271212..93271237,-#_fcd42226fec416ffec4443afee4b9ba9p@chr9:93271212..93271237, -
2.82e-21FFCP PHASE1:Hg19::chr10:35701454..35701488,+#_c1e31c449646bcf0aefe13aadbc3ac0bp@chr10:35701454..35701488, +
2.82e-21FFCP PHASE2:Hg19::chr10:35701454..35701488,+#_c1e31c449646bcf0aefe13aadbc3ac0bp@chr10:35701454..35701488, +
7.72e-21FFCP PHASE2:Hg19::chr12:95267640..95267650,-#_9dfecf9a629d13473d465593843c85c2p@chr12:95267640..95267650, -
7.72e-21FFCP PHASE1:Hg19::chr12:95267640..95267650,-#_9dfecf9a629d13473d465593843c85c2p@chr12:95267640..95267650, -
1.3e-19FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_672754a7d49c9f83a75d059602e4ff3dp@chr4:1160761..1160774, -
1.3e-19FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_672754a7d49c9f83a75d059602e4ff3dp@chr4:1160761..1160774, -
1.88e-19FFCP PHASE1:Hg19::chr2:42161753..42161771,-#_be8a1cff6b3fee438fe594bf49fc6799p@chr2:42161753..42161771, -
1.88e-19FFCP PHASE2:Hg19::chr2:42161753..42161771,-#_be8a1cff6b3fee438fe594bf49fc6799p@chr2:42161753..42161771, -
2.25e-19FFCP PHASE1:Hg19::chr9:21974747..21974756,-#_0ca24a25ce302c70e06147b6328f78cfp27@CDKN2A
2.25e-19FFCP PHASE2:Hg19::chr2:39963869..39963884,-#_0ca24a25ce302c70e06147b6328f78cfp@chr2:39963869..39963884, -
2.25e-19FFCP PHASE1:Hg19::chr2:39963869..39963884,-#_0ca24a25ce302c70e06147b6328f78cfp@chr2:39963869..39963884, -
2.25e-19FFCP PHASE2:Hg19::chr9:21974747..21974756,-#_0ca24a25ce302c70e06147b6328f78cfp27@CDKN2A
2.71e-19FFCP PHASE2:Hg19::chr13:76222103..76222108,+#_ab8cd9e541ef5cc101f0f4708b2970dcp@chr13:76222103..76222108, +
2.71e-19FFCP PHASE1:Hg19::chr13:76222103..76222108,+#_ab8cd9e541ef5cc101f0f4708b2970dcp@chr13:76222103..76222108, +
3.91e-19FFCP PHASE1:Hg19::chr10:33281363..33281383,-#_8e02629aeafab0e400c1b649dbcdf2e5p14@ITGB1
3.91e-19FFCP PHASE2:Hg19::chr10:33281363..33281383,-#_8e02629aeafab0e400c1b649dbcdf2e5p14@ITGB1
5.62e-19FFCP PHASE2:Hg19::chr10:93320563..93320567,-#_7e0f7b1112fc042ba3d4f3737921f949p@chr10:93320563..93320567, -
5.62e-19FFCP PHASE1:Hg19::chr9:12698542..12698573,+#_7e0f7b1112fc042ba3d4f3737921f949p16@TYRP1
5.62e-19FFCP PHASE2:Hg19::chr9:12698542..12698573,+#_7e0f7b1112fc042ba3d4f3737921f949p16@TYRP1
5.62e-19FFCP PHASE1:Hg19::chr10:93320563..93320567,-#_7e0f7b1112fc042ba3d4f3737921f949p@chr10:93320563..93320567, -
3.16e-18FFCP PHASE1:Hg19::chr3:123383492..123383500,-#_3ec7c761630de3a2548c513102c8d5a7p57@MYLK
3.16e-18FFCP PHASE1:Hg19::chrX:8472470..8472482,-#_3ec7c761630de3a2548c513102c8d5a7p@chrX:8472470..8472482, -
3.16e-18FFCP PHASE2:Hg19::chrX:8472470..8472482,-#_3ec7c761630de3a2548c513102c8d5a7p@chrX:8472470..8472482, -
3.16e-18FFCP PHASE2:Hg19::chr2:232030447..232030460,+#_3ec7c761630de3a2548c513102c8d5a7p@chr2:232030447..232030460, +
3.16e-18FFCP PHASE2:Hg19::chr3:123383492..123383500,-#_3ec7c761630de3a2548c513102c8d5a7p57@MYLK
3.16e-18FFCP PHASE1:Hg19::chr2:232030447..232030460,+#_3ec7c761630de3a2548c513102c8d5a7p@chr2:232030447..232030460, +
7.37e-18FFCP PHASE2:Hg19::chr11:75719740..75719766,+#_42b0e57d47890a7c1bde800efa262e20p@chr11:75719740..75719766, +
7.37e-18FFCP PHASE1:Hg19::chr1:206817396..206817400,+#_42b0e57d47890a7c1bde800efa262e20p@chr1:206817396..206817400, +
7.37e-18FFCP PHASE2:Hg19::chr1:206817396..206817400,+#_42b0e57d47890a7c1bde800efa262e20p@chr1:206817396..206817400, +
7.37e-18FFCP PHASE1:Hg19::chr11:75719740..75719766,+#_42b0e57d47890a7c1bde800efa262e20p@chr11:75719740..75719766, +
8.72e-18FFCP PHASE1:Hg19::chr7:41729687..41729699,-#_6e6c07481fab12b3a604a4d796c0d6f1p15@INHBA
8.72e-18FFCP PHASE2:Hg19::chr7:41729687..41729699,-#_6e6c07481fab12b3a604a4d796c0d6f1p15@INHBA
1.44e-17FFCP PHASE2:Hg19::chr10:127713413..127713421,-#_2682bc08a539457ca37815a3f69cba56p@chr10:127713413..127713421, -
1.44e-17FFCP PHASE1:Hg19::chr10:127713413..127713421,-#_2682bc08a539457ca37815a3f69cba56p@chr10:127713413..127713421, -
1.7e-17FFCP PHASE2:Hg19::chr7:121713743..121713746,-#_954b7ff8764f48a866b49fc49e926dfbp@chr7:121713743..121713746, -
1.7e-17FFCP PHASE2:Hg19::chr2:134325832..134325855,-#_954b7ff8764f48a866b49fc49e926dfbp7@NCKAP5
1.7e-17FFCP PHASE1:Hg19::chr2:134325832..134325855,-#_954b7ff8764f48a866b49fc49e926dfbp7@NCKAP5
1.7e-17FFCP PHASE1:Hg19::chr7:121713743..121713746,-#_954b7ff8764f48a866b49fc49e926dfbp@chr7:121713743..121713746, -
5.53e-17FFCP PHASE1:Hg19::chr1:192735472..192735488,-#_bef487614584962c06b0bae1d2e32354p@chr1:192735472..192735488, -
5.53e-17FFCP PHASE2:Hg19::chr1:192735472..192735488,-#_bef487614584962c06b0bae1d2e32354p@chr1:192735472..192735488, -
8.86e-17FFCP PHASE2:Hg19::chr14:79746061..79746074,+#_6a92589d4a022b4b18d6582724753bebp9@NRXN3
8.86e-17FFCP PHASE1:Hg19::chr14:79746061..79746074,+#_6a92589d4a022b4b18d6582724753bebp9@NRXN3
1.93e-16FFCP PHASE1:Hg19::chr2:197143137..197143140,-#_efbba3227587e080d15ab97cf25c1a32p@chr2:197143137..197143140, -
1.93e-16FFCP PHASE2:Hg19::chr2:197143137..197143140,-#_efbba3227587e080d15ab97cf25c1a32p@chr2:197143137..197143140, -
2.25e-16FFCP PHASE1:Hg19::chr3:133131715..133131731,-#_865fed2551de55d50bf1457fef72f435p2@BC040919
2.25e-16FFCP PHASE2:Hg19::chr14:79746108..79746120,+#_865fed2551de55d50bf1457fef72f435p10@NRXN3
2.25e-16FFCP PHASE2:Hg19::chr3:133131715..133131731,-#_865fed2551de55d50bf1457fef72f435p2@BC040919
2.25e-16FFCP PHASE1:Hg19::chr14:79746108..79746120,+#_865fed2551de55d50bf1457fef72f435p10@NRXN3
3.07e-16FFCP PHASE1:Hg19::chr5:22560465..22560471,+#_b938bb2ce599266d2ca1d9ab3cdafb85p@chr5:22560465..22560471, +
3.07e-16FFCP PHASE2:Hg19::chr5:22560465..22560471,+#_b938bb2ce599266d2ca1d9ab3cdafb85p@chr5:22560465..22560471, +
2.38e-15FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_eb12de81a48ff54faa822b5b72a90081p@chr16:65159902..65159909, -
2.38e-15FFCP PHASE1:Hg19::chr9:103340443..103340454,+#_eb12de81a48ff54faa822b5b72a90081p4@MURC