Personal tools

CL:0002586

From FANTOM5_SSTAR

Jump to: navigation, search
Name:retinal pigment epithelial cell
Namespace:FANTOM
Definition:"An epithelial cell of the retinal pigmented epithelium." [GOC:tfm]
Xrefs:
links:

BTO:0004910

FMA:75802
Created by:tmeehan
Creation date:2011-03-06T03:37:09Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000066(epithelial cell),CL:0000149(visual pigment cell),CL:0009004(retinal cell)
part_of:UBERON:0001782(pigmented layer of retina)



Children


derives from:FF:0000158 (human retinal pigment epithelial cell sample),FF:0300100 (ARPE-19 EMT induced with TGF-beta and TNF-alpha sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
  • 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
  • 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
  • 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
  • 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
  • 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)

... further results Mouse (Mus musculus)

  • 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
  • 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
  • 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
  • 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
  • 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
  • 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
  • 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002586 (retinal pigment epithelial cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.79e-195FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_2a551d0e3647683b0c37cad2b3358d73p@chr1:147150847..147150854, -
2.79e-195FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_2a551d0e3647683b0c37cad2b3358d73p@chr1:147150847..147150854, -
3.27e-147FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_709b708b702ba970e9d6241c87f75c22p2@SERPINE3
3.27e-147FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_709b708b702ba970e9d6241c87f75c22p2@SERPINE3
5.41e-147FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_a8baddfc721fdf380f1c7de4194ea2c5p@chr13:99135322..99135327, -
5.41e-147FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_a8baddfc721fdf380f1c7de4194ea2c5p@chr13:99135322..99135327, -
8.98e-131FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_f822c893e6f3f7018b22203e39daed18p@chr13:51913893..51913901, +
8.98e-131FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_f822c893e6f3f7018b22203e39daed18p@chr13:51913893..51913901, +
3.48e-118FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_365c67e4a061f98b608baed0ba078761p@chr11:109990513..109990520, -
3.48e-118FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_365c67e4a061f98b608baed0ba078761p@chr11:109990513..109990520, -
1.16e-117FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_2eb3d08c4df74934424e68368c98148cp@chr5:70308745..70308754, -
1.16e-117FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_2eb3d08c4df74934424e68368c98148cp@chr5:70308745..70308754, -
7.95e-99FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_817f54cd88b70d9618ec4dd23e563b5cp2@C11orf9
7.95e-99FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_817f54cd88b70d9618ec4dd23e563b5cp2@C11orf9
2.17e-98FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_2f4b46d5a59d1637913df1ab58f6539dp@chr2:235591306..235591328, +
2.17e-98FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_2f4b46d5a59d1637913df1ab58f6539dp@chr2:235591306..235591328, +
6.24e-88FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_1a194f83961a5283da18f695ad7352d1p9@C11orf9
6.24e-88FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_1a194f83961a5283da18f695ad7352d1p9@C11orf9
9.74e-88FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_a98fa168b185a94a622fbb3c63dcf647p11@CRISPLD1
9.74e-88FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_a98fa168b185a94a622fbb3c63dcf647p11@CRISPLD1
1.52e-87FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_e960176834e654b0610e018fcc83239fp5@ENST00000437916
1.52e-87FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_e960176834e654b0610e018fcc83239fp5@ENST00000437916
2.28e-85FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_4eda99069e44ad83af3177231bfaeaf1p1@SERPINE3
2.28e-85FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_4eda99069e44ad83af3177231bfaeaf1p1@SERPINE3
1.01e-74FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_b0e0e941d82b27f5bf8fcb71295ba3bbp@chr3:69928426..69928436, +
1.01e-74FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_b0e0e941d82b27f5bf8fcb71295ba3bbp@chr3:69928426..69928436, +
1.29e-74FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_431697489e35dd0582923740aea2ef39p@chr3:69928404..69928418, +
1.29e-74FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_431697489e35dd0582923740aea2ef39p@chr3:69928404..69928418, +
2.14e-74FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_5c98fdd8bf11bb08f17ebe834a25ca1ap@chr22:37633537..37633546, -
2.14e-74FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_5c98fdd8bf11bb08f17ebe834a25ca1ap@chr22:37633537..37633546, -
2.14e-74FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_5c98fdd8bf11bb08f17ebe834a25ca1ap@chr6:168250971..168250985, +
2.14e-74FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_5c98fdd8bf11bb08f17ebe834a25ca1ap@chr6:168250971..168250985, +
3.54e-74FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_3778900dc05114de390718418afe5e6c+, p@chr1:43533230..43533270
3.54e-74FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_3778900dc05114de390718418afe5e6cp@chr1:43533230..43533270, +
1.54e-66FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_a3736b2053404b8532ca2b21a69cab11p5@CLIC6
1.54e-66FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_a3736b2053404b8532ca2b21a69cab11p5@CLIC6
2.39e-66FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_a2454988fdd1b38c74839c4e0df8b1a7p@chr13:51913997..51914020, +
2.39e-66FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_a2454988fdd1b38c74839c4e0df8b1a7p@chr13:51913997..51914020, +
6.53e-66FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_df3d74c0b6acc24beaa75507ee6fa3fdp@chr6:168251000..168251007, +
6.53e-66FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_df3d74c0b6acc24beaa75507ee6fa3fdp@chr6:168251000..168251007, +
2.98e-60FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_d604b5d3d19e121464fdd7ac7661dd21p@chr13:99135278..99135298, -
2.98e-60FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_d604b5d3d19e121464fdd7ac7661dd21p@chr13:99135278..99135298, -
5.01e-55FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_3e83d7732aaff91d2022af6b801a57edp@chr3:69928371..69928385, +
5.01e-55FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_3e83d7732aaff91d2022af6b801a57edp@chr3:69928371..69928385, +
7.24e-55FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_7a62c5d6170a3cfef091ae5e210d87dbp@chr14:87636652..87636657, -
7.24e-55FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_7a62c5d6170a3cfef091ae5e210d87dbp@chr14:87636652..87636657, -
1.68e-53FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_df9a21bcc7ea0acba96f2784c1519d6ep@chr2:235591286..235591298, +
1.68e-53FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_df9a21bcc7ea0acba96f2784c1519d6ep@chr2:235591286..235591298, +
6.39e-53FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_da803030c45f92d8990268805c7ac6d6p@chr16:84228961..84228982, +
6.39e-53FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_da803030c45f92d8990268805c7ac6d6p5@MFRP, p6@C1QTNF5
6.39e-53FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_da803030c45f92d8990268805c7ac6d6p@chr16:84228961..84228982, +
6.39e-53FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_da803030c45f92d8990268805c7ac6d6p5@MFRP, p6@C1QTNF5
9.6e-51FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_28d75cbeda9e392bc8602d22265d7230p3@CLIC6
9.6e-51FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_28d75cbeda9e392bc8602d22265d7230p3@CLIC6
1.89e-50FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_7ae24cc48dba963679e9734e6b5c569dp7@GDPD5
1.89e-50FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_7ae24cc48dba963679e9734e6b5c569dp7@GDPD5
7.24e-50FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_7c0cc97a0de9806c8ba429273699295cp4@MFRP, p5@C1QTNF5
7.24e-50FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_7c0cc97a0de9806c8ba429273699295cp4@MFRP, p5@C1QTNF5
6.25e-45FFCP PHASE2:Hg19::chr17:932596..932605,-#_af209501ecd9ac4f61f320ee10c1b1a1p@chr17:932596..932605, -
6.25e-45FFCP PHASE1:Hg19::chr17:932596..932605,-#_af209501ecd9ac4f61f320ee10c1b1a1p@chr17:932596..932605, -
1.22e-44FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_a95d7a32ffbc76dd7ad25972f5ab66bdp1@SLC16A8
1.22e-44FFCP PHASE2:Hg19::chr17:932340..932343,-#_a95d7a32ffbc76dd7ad25972f5ab66bdp@chr17:932340..932343, -
1.22e-44FFCP PHASE1:Hg19::chr17:932340..932343,-#_a95d7a32ffbc76dd7ad25972f5ab66bdp@chr17:932340..932343, -
1.22e-44FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_a95d7a32ffbc76dd7ad25972f5ab66bdp5@CYP24A1
1.22e-44FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_a95d7a32ffbc76dd7ad25972f5ab66bdp5@CYP24A1
1.22e-44FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_a95d7a32ffbc76dd7ad25972f5ab66bdp1@SLC16A8
2.38e-44FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_324e54e77b515efc94fce28f1d1d48c0p@chr3:98672197..98672201, +
2.38e-44FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_324e54e77b515efc94fce28f1d1d48c0p@chr3:98672197..98672201, +
2.97e-44FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_695dedc17a542cf7304ada27c8c5337ap@chr3:183733654..183733680, -
2.97e-44FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_695dedc17a542cf7304ada27c8c5337ap@chr3:183733654..183733680, -
2.97e-44FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_695dedc17a542cf7304ada27c8c5337ap1@ENST00000437461
2.97e-44FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_695dedc17a542cf7304ada27c8c5337ap1@ENST00000437461
4.49e-44FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_441a4ff5e28c974b9c784dbb66039d95p@chr9:140088882..140088898, -
4.49e-44FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_441a4ff5e28c974b9c784dbb66039d95p@chr9:140088882..140088898, -
1.24e-43FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_d42bdf0345f0a9b08268b8f1aea47aa2p1@LOC100505967
1.24e-43FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_d42bdf0345f0a9b08268b8f1aea47aa2p1@LOC100505967
2.95e-43FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_404a1f31e7455ffd4ec259d80457ca6cp11@SIX3
2.95e-43FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_404a1f31e7455ffd4ec259d80457ca6cp11@SIX3
4.55e-43FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_5e9c5a1e97f0330feb953e6e6fd777f9p2@SLC45A2
4.55e-43FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_5e9c5a1e97f0330feb953e6e6fd777f9p2@SLC45A2
3.86e-41FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_3c71154fb31c6d4baf046a2acb9e0a1dp@chr16:68301840..68301845, +
3.86e-41FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_3c71154fb31c6d4baf046a2acb9e0a1dp@chr16:68301840..68301845, +
9.96e-41FFCP PHASE2:Hg19::chr19:49140255..49140268,-#_ba51aadfe2fac04d51b23060bf88e215p9@DBP
9.96e-41FFCP PHASE1:Hg19::chr19:49140255..49140268,-#_ba51aadfe2fac04d51b23060bf88e215p9@DBP
1.31e-40FFCP PHASE1:Hg19::chr12:52579447..52579461,-#_8a37880623142027c3d94e43d8017f42p6@KRT80
1.31e-40FFCP PHASE2:Hg19::chr12:52579447..52579461,-#_8a37880623142027c3d94e43d8017f42p6@KRT80
1.49e-40FFCP PHASE1:Hg19::chr4:23886471..23886501,-#_9f315c6767650911a66468fa36f79e67p5@PPARGC1A
1.49e-40FFCP PHASE2:Hg19::chr4:23886471..23886501,-#_9f315c6767650911a66468fa36f79e67p5@PPARGC1A
1.71e-40FFCP PHASE2:Hg19::chr11:119217318..119217346,-#_837446a760b70bf83cc12df1bfa3dbaap2@MFRP
1.71e-40FFCP PHASE1:Hg19::chr11:119217318..119217346,-#_837446a760b70bf83cc12df1bfa3dbaap2@MFRP
1.96e-40FFCP PHASE2:Hg19::chr11:119217405..119217420,-#_0f5d9f7ab46f8fd5940703e4829e98e8p3@C1QTNF5, p3@MFRP
1.96e-40FFCP PHASE1:Hg19::chr11:119217405..119217420,-#_0f5d9f7ab46f8fd5940703e4829e98e8p3@C1QTNF5, p3@MFRP
2.93e-40FFCP PHASE1:Hg19::chr8:144905532..144905541,-#_156168d86eaaddb0862f666276a6cc1ep6@PUF60
2.93e-40FFCP PHASE2:Hg19::chr8:144905532..144905541,-#_156168d86eaaddb0862f666276a6cc1ep6@PUF60
3.83e-40FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_e73fb7584514f60078bd0db15f4ea965p1@ENST00000432125
3.83e-40FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_e73fb7584514f60078bd0db15f4ea965p1@ENST00000432125
6.54e-40FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_42ceeaa6da93b18efcb88de1ca31d9ccp6@TRPM3
6.54e-40FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_42ceeaa6da93b18efcb88de1ca31d9ccp6@TRPM3
1.11e-38FFCP PHASE1:Hg19::chr11:67776077..67776088,+#_245a66603b573894cedf8ed1070202b6p5@ALDH3B1
1.11e-38FFCP PHASE2:Hg19::chr11:67776077..67776088,+#_245a66603b573894cedf8ed1070202b6p5@ALDH3B1