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CL:0002588

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Name:smooth muscle cell of the umbilical vein
Namespace:FANTOM
Definition:"A smooth muscle cell of the umbilical vein." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:00:51Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0002066(umbilical vein)



Children


derives from:FF:0000177 (human smooth muscle cell of umbilical vein sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
  • 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
  • 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)

Mouse (Mus musculus)

  • 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
  • 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
  • 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002588 (smooth muscle cell of the umbilical vein), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr17:54543635..54543636,+#_6e8ecf5e79d820a9c32f1781a62925bep@chr17:54543635..54543636, +
1.55e-98FFCP PHASE1:Hg19::chr17:54543635..54543636,+#_6e8ecf5e79d820a9c32f1781a62925bep@chr17:54543635..54543636, +
1.55e-98FFCP PHASE2:Hg19::chr17:54543642..54543647,+#_6e8ecf5e79d820a9c32f1781a62925bep@chr17:54543642..54543647, +
1.55e-98FFCP PHASE1:Hg19::chr17:54543642..54543647,+#_6e8ecf5e79d820a9c32f1781a62925bep@chr17:54543642..54543647, +
3.96e-66FFCP PHASE1:Hg19::chr15:22545370..22545372,+#_04163981eabbb2b3c12fe3954f4f6c9cp@chr15:22545370..22545372, +
3.96e-66FFCP PHASE2:Hg19::chr15:22545370..22545372,+#_04163981eabbb2b3c12fe3954f4f6c9cp@chr15:22545370..22545372, +
3.58e-57FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_087b34bccc75df9cdc3229a887b92689p29@MME
3.58e-57FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_087b34bccc75df9cdc3229a887b92689p29@MME
2.74e-50FFCP PHASE1:Hg19::chr16:4181309..4181310,-#_8999638bdaebc785bb5287d7046ecb48p@chr16:4181309..4181310, -
2.74e-50FFCP PHASE2:Hg19::chr16:4181309..4181310,-#_8999638bdaebc785bb5287d7046ecb48p@chr16:4181309..4181310, -
3.61e-34FFCP PHASE2:Hg19::chr19:8567177..8567179,+#_855ee9936051aa0ecb31c26eead8de9dp@chr19:8567177..8567179, +
3.61e-34FFCP PHASE1:Hg19::chr19:8567177..8567179,+#_855ee9936051aa0ecb31c26eead8de9dp@chr19:8567177..8567179, +
7.05e-34FFCP PHASE2:Hg19::chr21:22496435..22496437,-#_3fb1b4901f70797dd89ee1ee16a8b77bp@chr21:22496435..22496437, -
7.05e-34FFCP PHASE1:Hg19::chr21:22496435..22496437,-#_3fb1b4901f70797dd89ee1ee16a8b77bp@chr21:22496435..22496437, -
5.2e-30FFCP PHASE1:Hg19::chr12:44152515..44152534,-#_cf050f19aa2944a97d8114f390b0c2fcp2@PUS7L
5.2e-30FFCP PHASE2:Hg19::chr12:44152515..44152534,-#_cf050f19aa2944a97d8114f390b0c2fcp2@PUS7L
8.05e-30FFCP PHASE2:Hg19::chr3:154741907..154741918,+#_0a668c24fcf2e45cc2a3ad0a089e8158p25@MME
8.05e-30FFCP PHASE1:Hg19::chr3:154741907..154741918,+#_0a668c24fcf2e45cc2a3ad0a089e8158p25@MME
6.01e-22FFCP PHASE2:Hg19::chr8:5515544..5515548,+#_9d43f806f612f76783ae31830484a693p@chr8:5515544..5515548, +
6.01e-22FFCP PHASE1:Hg19::chr8:5515544..5515548,+#_9d43f806f612f76783ae31830484a693p@chr8:5515544..5515548, +
2.08e-21FFCP PHASE2:Hg19::chr3:154797315..154797322,+#_d49b3942b82213f8fa149babb1653816p24@MME
2.08e-21FFCP PHASE1:Hg19::chr3:154797315..154797322,+#_d49b3942b82213f8fa149babb1653816p24@MME
3.81e-21FFCP PHASE2:Hg19::chr12:65928345..65928348,-#_ece5968f88125ec6be5a6c56579f64b5p@chr12:65928345..65928348, -
3.81e-21FFCP PHASE1:Hg19::chr12:65928345..65928348,-#_ece5968f88125ec6be5a6c56579f64b5p@chr12:65928345..65928348, -
4.66e-21FFCP PHASE1:Hg19::chr3:162256416..162256425,-#_943ab0485bb50f77a310a42ac85bcfccp@chr3:162256416..162256425, -
4.66e-21FFCP PHASE2:Hg19::chr3:162256416..162256425,-#_943ab0485bb50f77a310a42ac85bcfccp@chr3:162256416..162256425, -
3.67e-20FFCP PHASE2:Hg19::chr3:112320522..112320525,-#_38ccb9398865de78b31093a9bad5f308p@chr3:112320522..112320525, -
3.67e-20FFCP PHASE1:Hg19::chr3:112320522..112320525,-#_38ccb9398865de78b31093a9bad5f308p@chr3:112320522..112320525, -
8.54e-20FFCP PHASE1:Hg19::chr6:6536213..6536216,+#_eafe0a9de5769332e81b634c8d9517edp@chr6:6536213..6536216, +
8.54e-20FFCP PHASE2:Hg19::chr6:6536213..6536216,+#_eafe0a9de5769332e81b634c8d9517edp@chr6:6536213..6536216, +
6.48e-18FFCP PHASE1:Hg19::chr8:57390832..57390833,-#_ca8c643338d696a0b0539cd039323133p2@SEPT10P1
6.48e-18FFCP PHASE1:Hg19::chr15:71624452..71624460,-#_ca8c643338d696a0b0539cd039323133p@chr15:71624452..71624460, -
6.48e-18FFCP PHASE2:Hg19::chr15:71624452..71624460,-#_ca8c643338d696a0b0539cd039323133p@chr15:71624452..71624460, -
6.48e-18FFCP PHASE2:Hg19::chr8:57390832..57390833,-#_ca8c643338d696a0b0539cd039323133p2@SEPT10P1
6.23e-17FFCP PHASE2:Hg19::chr17:43685905..43685910,+#_c88541c54a44cd810d3404bb23c46638p1@RPS26P8
6.23e-17FFCP PHASE1:Hg19::chr17:43685905..43685910,+#_c88541c54a44cd810d3404bb23c46638p1@RPS26P8
7.02e-17FFCP PHASE1:Hg19::chr18:28622894..28622905,-#_42b4536e6dabf08da27a1140ffd87369p7@DSC3
7.02e-17FFCP PHASE2:Hg19::chr18:28622894..28622905,-#_42b4536e6dabf08da27a1140ffd87369p7@DSC3
6.98e-16FFCP PHASE1:Hg19::chr18:28621487..28621504,+#_9ae8f3c71322662dd59bd2d04198c87cp@chr18:28621487..28621504, +
6.98e-16FFCP PHASE2:Hg19::chr18:28621487..28621504,+#_9ae8f3c71322662dd59bd2d04198c87cp@chr18:28621487..28621504, +
1.54e-15FFCP PHASE1:Hg19::chr4:174429652..174429665,+#_507adf603296166e65f946928bf11dfbp@chr4:174429652..174429665, +
1.54e-15FFCP PHASE2:Hg19::chr4:174429652..174429665,+#_507adf603296166e65f946928bf11dfbp@chr4:174429652..174429665, +
1.67e-15FFCP PHASE2:Hg19::chr2:95714054..95714058,+#_c14ccf98fb5ab0d9bc5ffa7be514a2cbp@chr2:95714054..95714058, +
1.67e-15FFCP PHASE1:Hg19::chr2:95714054..95714058,+#_c14ccf98fb5ab0d9bc5ffa7be514a2cbp@chr2:95714054..95714058, +
1.79e-15FFCP PHASE2:Hg19::chr4:174429255..174429289,+#_ce47688b0335142f2673d96ec0608b40p@chr4:174429255..174429289, +
1.79e-15FFCP PHASE1:Hg19::chr4:174429255..174429289,+#_ce47688b0335142f2673d96ec0608b40p@chr4:174429255..174429289, +
2.37e-15FFCP PHASE1:Hg19::chr1:154378546..154378548,+#_5a4709728609379057353e48f3d2fa12p@chr1:154378546..154378548, +
2.37e-15FFCP PHASE2:Hg19::chr1:154378546..154378548,+#_5a4709728609379057353e48f3d2fa12p@chr1:154378546..154378548, +
6.82e-15FFCP PHASE1:Hg19::chr3:124829277..124829294,-#_7e27eb1f50af80836e0f425a3584eaebp10@SLC12A8
6.82e-15FFCP PHASE2:Hg19::chr3:124829277..124829294,-#_7e27eb1f50af80836e0f425a3584eaebp10@SLC12A8
8.43e-15FFCP PHASE2:Hg19::chr3:154797300..154797313,+#_a33e6b0d59a3fd7de71a35c01a25aaf6p21@MME
8.43e-15FFCP PHASE1:Hg19::chr3:154797300..154797313,+#_a33e6b0d59a3fd7de71a35c01a25aaf6p21@MME
1.2e-14FFCP PHASE1:Hg19::chr19:633607..633619,-#_9afc8a60014db010b76c20a1f9f1e987p3@POLRMT
1.2e-14FFCP PHASE2:Hg19::chr19:633607..633619,-#_9afc8a60014db010b76c20a1f9f1e987p3@POLRMT
2.36e-14FFCP PHASE1:Hg19::chr2:198629457..198629461,+#_1a3fc0234f46ddd7dde882601e9c862cp@chr2:198629457..198629461, +
2.36e-14FFCP PHASE2:Hg19::chr2:198629457..198629461,+#_1a3fc0234f46ddd7dde882601e9c862cp@chr2:198629457..198629461, +
3.09e-14FFCP PHASE2:Hg19::chr11:113945540..113945542,-#_3f0e45529ef3d4f35fdf5566b404a545p@chr11:113945540..113945542, -
3.09e-14FFCP PHASE1:Hg19::chr11:113945540..113945542,-#_3f0e45529ef3d4f35fdf5566b404a545p@chr11:113945540..113945542, -
3.74e-14FFCP PHASE2:Hg19::chr12:26783639..26783652,-#_6dc34b1d82fba70603d0d62d19cdd548p9@ITPR2
3.74e-14FFCP PHASE1:Hg19::chr12:26783639..26783652,-#_6dc34b1d82fba70603d0d62d19cdd548p9@ITPR2
5.28e-14FFCP PHASE2:Hg19::chr12:54362447..54362462,-#_86f5ae84b62d76bb22085fa7c383d993p1@HOTAIR
5.28e-14FFCP PHASE1:Hg19::chr12:54362447..54362462,-#_86f5ae84b62d76bb22085fa7c383d993p1@HOTAIR
1.98e-13FFCP PHASE1:Hg19::chr15:66284416..66284418,-#_6fed2278bfa2b62bdc3d5e41a0f1da37p@chr15:66284416..66284418, -
1.98e-13FFCP PHASE2:Hg19::chr15:66284416..66284418,-#_6fed2278bfa2b62bdc3d5e41a0f1da37p@chr15:66284416..66284418, -
2.15e-13FFCP PHASE1:Hg19::chr3:154801537..154801556,+#_1d0b860a7c439df7435b0924f793d1b5p17@MME
2.15e-13FFCP PHASE2:Hg19::chr3:154801537..154801556,+#_1d0b860a7c439df7435b0924f793d1b5p17@MME
5.56e-13FFCP PHASE2:Hg19::chr12:26783618..26783634,-#_b8562bb9ae7086f0b2376d0d138aea68p8@ITPR2
5.56e-13FFCP PHASE1:Hg19::chr12:26783618..26783634,-#_b8562bb9ae7086f0b2376d0d138aea68p8@ITPR2
6.32e-13FFCP PHASE2:Hg19::chr17:59147214..59147221,+#_3ec798ec73614f23c1384c1640ee79a2p1@ENST00000437246
6.32e-13FFCP PHASE1:Hg19::chr17:59147214..59147221,+#_3ec798ec73614f23c1384c1640ee79a2p1@ENST00000437246
7.54e-13FFCP PHASE1:Hg19::chr3:154899644..154899672,+#_a3fd2d1705892904231d3f88a3409fc7p@chr3:154899644..154899672, +
7.54e-13FFCP PHASE2:Hg19::chr3:154899644..154899672,+#_a3fd2d1705892904231d3f88a3409fc7p@chr3:154899644..154899672, +
8.03e-13FFCP PHASE2:Hg19::chrX:138802915..138802934,-#_1597e8a5ca4f75f84fa9708c10d59f58p@chrX:138802915..138802934, -
8.03e-13FFCP PHASE1:Hg19::chrX:138802915..138802934,-#_1597e8a5ca4f75f84fa9708c10d59f58p@chrX:138802915..138802934, -
9.55e-13FFCP PHASE1:Hg19::chr12:54384370..54384382,+#_a43ea0beb6c442b71e4ceeb47db32efep5@HOXC6
9.55e-13FFCP PHASE2:Hg19::chr12:54384370..54384382,+#_a43ea0beb6c442b71e4ceeb47db32efep5@HOXC6
1.22e-12FFCP PHASE2:Hg19::chr3:113603761..113603770,+#_9d10562ecd00647ab40abb74d0b7b7b9p1@ENST00000478867
1.22e-12FFCP PHASE1:Hg19::chr3:113603761..113603770,+#_9d10562ecd00647ab40abb74d0b7b7b9p1@ENST00000478867
1.36e-12FFCP PHASE2:Hg19::chr12:54402694..54402705,+#_e92680032f4d1aa225290f9015a6154dp5@HOXC8
1.36e-12FFCP PHASE1:Hg19::chr12:54402694..54402705,+#_e92680032f4d1aa225290f9015a6154dp5@HOXC8
1.52e-12FFCP PHASE1:Hg19::chr11:9597049..9597068,+#_3471152fdcf656dd28a5cef291cd70cap13@WEE1
1.52e-12FFCP PHASE2:Hg19::chr11:9597049..9597068,+#_3471152fdcf656dd28a5cef291cd70cap13@WEE1
2.16e-12FFCP PHASE2:Hg19::chr7:23520253..23520276,+#_a8d5f0ac9fa3868b3acddb0c9007812fp1@ENST00000428259
2.16e-12FFCP PHASE1:Hg19::chr7:23520253..23520276,+#_a8d5f0ac9fa3868b3acddb0c9007812fp1@ENST00000428259
2.59e-12FFCP PHASE2:Hg19::chr12:54379066..54379073,+#_75b6a820c2a56089ca479e810e701663p11@HOXC10
2.59e-12FFCP PHASE1:Hg19::chr12:54379066..54379073,+#_75b6a820c2a56089ca479e810e701663p11@HOXC10
2.62e-12FFCP PHASE2:Hg19::chr2:91777916..91777918,+#_b1353b286c44c5e699b3b838c492c595p1@ENST00000443031
2.62e-12FFCP PHASE1:Hg19::chr2:91777916..91777918,+#_b1353b286c44c5e699b3b838c492c595p1@ENST00000443031
3.24e-12FFCP PHASE2:Hg19::chr8:98900237..98900248,+#_375f929e1b5fdb63abbb37f9115a1793p8@MATN2
3.24e-12FFCP PHASE1:Hg19::chr8:98900237..98900248,+#_375f929e1b5fdb63abbb37f9115a1793p8@MATN2
3.62e-12FFCP PHASE1:Hg19::chr12:54361138..54361164,-#_7d4009a86af60e79db2b98dbfec81d70p4@HOTAIR
3.62e-12FFCP PHASE2:Hg19::chr12:54361138..54361164,-#_7d4009a86af60e79db2b98dbfec81d70p4@HOTAIR
4.43e-12FFCP PHASE1:Hg19::chr13:75941109..75941132,-#_f462fe5bee45a7505f35d367f90a5a6ap@chr13:75941109..75941132, -
4.43e-12FFCP PHASE2:Hg19::chr13:75941109..75941132,-#_f462fe5bee45a7505f35d367f90a5a6ap@chr13:75941109..75941132, -
1.82e-11FFCP PHASE2:Hg19::chr8:68318708..68318725,+#_cc5265f92f3a632162d650639464566fp1@ENST00000483964
1.82e-11FFCP PHASE2:Hg19::chr15:67524744..67524745,+#_cc5265f92f3a632162d650639464566fp1@ENST00000497294
1.82e-11FFCP PHASE1:Hg19::chr8:68318708..68318725,+#_cc5265f92f3a632162d650639464566fp1@ENST00000483964
1.82e-11FFCP PHASE1:Hg19::chr15:67524744..67524745,+#_cc5265f92f3a632162d650639464566fp1@ENST00000497294
2.71e-11FFCP PHASE2:Hg19::chr16:476408..476412,+#_3b8b7a7d020da89df78168fd4c780105p1@AB383948
2.71e-11FFCP PHASE1:Hg19::chr16:476408..476412,+#_3b8b7a7d020da89df78168fd4c780105p1@AB383948