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CL:0002590

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Name:smooth muscle cell of the brain vasculature
Namespace:FANTOM
Definition:"A vascular associated smooth muscle cell of the brain vasculature." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:01:20Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000359(vascular associated smooth muscle cell),CL:0002319(neural cell)
part_of:UBERON:0005284(brain vasculature)



Children


derives from:FF:0000170 (human smooth muscle cell of the brain vasculature sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11315-117D1 (Smooth Muscle Cells - Brain Vascular, donor2)
  • 11391-118C5 (Smooth Muscle Cells - Brain Vascular, donor3)

Mouse (Mus musculus)

  • 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
  • 11315-117D1 (Smooth Muscle Cells - Brain Vascular, donor2)
  • 11391-118C5 (Smooth Muscle Cells - Brain Vascular, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002590 (smooth muscle cell of the brain vasculature), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.53e-44FFCP PHASE2:Hg19::chr8:128902571..128902583,+#_57f2b181eb68b311f5c96866d9c467a6p15@PVT1
1.53e-44FFCP PHASE1:Hg19::chr8:128902571..128902583,+#_57f2b181eb68b311f5c96866d9c467a6p15@PVT1
4.84e-30FFCP PHASE1:Hg19::chr11:73020686..73020697,+#_806fa2cbb2345f82deefa1b9dcd49f33p23@ARHGEF17
4.84e-30FFCP PHASE2:Hg19::chr11:73020686..73020697,+#_806fa2cbb2345f82deefa1b9dcd49f33p23@ARHGEF17
3.38e-25FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_a795af5f4532ec82aa8783bbc85e840bp20@RIMS1
3.38e-25FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_a795af5f4532ec82aa8783bbc85e840bp20@RIMS1
3.27e-23FFCP PHASE1:Hg19::chr3:147106858..147106869,-#_2732bd3e803bd38702fd6e5b2a3b9fc9p25@ZIC4
3.27e-23FFCP PHASE2:Hg19::chr3:147106858..147106869,-#_2732bd3e803bd38702fd6e5b2a3b9fc9p25@ZIC4
4.09e-23FFCP PHASE2:Hg19::chr5:156811295..156811314,+#_5e4d8104b18544ba50ad3d848013c600p35@CYFIP2
4.09e-23FFCP PHASE1:Hg19::chr10:14457224..14457226,+#_5e4d8104b18544ba50ad3d848013c600p@chr10:14457224..14457226, +
4.09e-23FFCP PHASE1:Hg19::chr5:156811295..156811314,+#_5e4d8104b18544ba50ad3d848013c600p35@CYFIP2
4.09e-23FFCP PHASE2:Hg19::chr10:14457224..14457226,+#_5e4d8104b18544ba50ad3d848013c600p@chr10:14457224..14457226, +
1.29e-21FFCP PHASE2:Hg19::chr6:72970412..72970435,+#_5e9e85ba5f92eeeb2b91e8f273c31221p11@RIMS1
1.29e-21FFCP PHASE1:Hg19::chr6:72970412..72970435,+#_5e9e85ba5f92eeeb2b91e8f273c31221p11@RIMS1
2.77e-20FFCP PHASE1:Hg19::chr6:72970389..72970411,+#_877b2f3bc58d043f4a622000e9722befp6@RIMS1
2.77e-20FFCP PHASE2:Hg19::chr6:72970389..72970411,+#_877b2f3bc58d043f4a622000e9722befp6@RIMS1
3.32e-20FFCP PHASE1:Hg19::chrX:31284990..31284993,-#_905f43a16ee61637e08b56bebdd29c96p17@DMD
3.32e-20FFCP PHASE2:Hg19::chrX:31284990..31284993,-#_905f43a16ee61637e08b56bebdd29c96p17@DMD
2.04e-19FFCP PHASE1:Hg19::chr10:60516419..60516420,+#_91730613f7a0b06d7406265889732d28p@chr10:60516419..60516420, +
2.04e-19FFCP PHASE2:Hg19::chr10:60516419..60516420,+#_91730613f7a0b06d7406265889732d28p@chr10:60516419..60516420, +
6.76e-18FFCP PHASE1:Hg19::chr4:56904090..56904097,-#_a308951a22b8d288f0b384d6fabd782bp@chr4:56904090..56904097, -
6.76e-18FFCP PHASE2:Hg19::chr4:56904090..56904097,-#_a308951a22b8d288f0b384d6fabd782bp@chr4:56904090..56904097, -
8.0e-18FFCP PHASE1:Hg19::chr12:78333879..78333896,+#_d01fd209d114b15079ee9f2876462c6fp21@NAV3
8.0e-18FFCP PHASE2:Hg19::chr12:78333879..78333896,+#_d01fd209d114b15079ee9f2876462c6fp21@NAV3
8.98e-18FFCP PHASE1:Hg19::chr1:31842256..31842273,+#_fcbde8d553e9b22d6eb6a07c4a328adap@chr1:31842256..31842273, +
8.98e-18FFCP PHASE2:Hg19::chr1:31842256..31842273,+#_fcbde8d553e9b22d6eb6a07c4a328adap@chr1:31842256..31842273, +
9.46e-18FFCP PHASE1:Hg19::chr9:16515712..16515717,-#_d18e2725cb32b4c002eb910e3167c4e4-, p@chr9:16515712..16515717
9.46e-18FFCP PHASE2:Hg19::chr9:16515712..16515717,-#_d18e2725cb32b4c002eb910e3167c4e4p@chr9:16515712..16515717, -
1.64e-17FFCP PHASE1:Hg19::chr10:128000698..128000700,-#_9c9392368a5274a95ae9548d21977e90p@chr10:128000698..128000700, -
1.64e-17FFCP PHASE2:Hg19::chr10:128000698..128000700,-#_9c9392368a5274a95ae9548d21977e90p@chr10:128000698..128000700, -
7.83e-16FFCP PHASE2:Hg19::chr4:169540045..169540056,+#_ee03344eabdb79b5b96392aab4983c6ep@chr4:169540045..169540056, +
7.83e-16FFCP PHASE1:Hg19::chr4:169540045..169540056,+#_ee03344eabdb79b5b96392aab4983c6ep@chr4:169540045..169540056, +
1.32e-15FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_1273acc0a8965c99c6f829afba7aa3d3p@chr11:60640905..60640919, +
1.32e-15FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_1273acc0a8965c99c6f829afba7aa3d3p@chr11:60640905..60640919, +
8.08e-15FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_7ee42c1dca2aa382c94c5104df492cb3p6@CCDC86
8.08e-15FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_7ee42c1dca2aa382c94c5104df492cb3p6@CCDC86
1.4e-14FFCP PHASE1:Hg19::chr5:142023741..142023750,-#_85b7231bc7d7bcbb1ce09cc9207553afp18@FGF1
1.4e-14FFCP PHASE2:Hg19::chr5:142023741..142023750,-#_85b7231bc7d7bcbb1ce09cc9207553afp18@FGF1
1.6e-14FFCP PHASE2:Hg19::chr11:60680219..60680235,+#_8cb83ea2d06e15b694bb0ae8ea672d6cp@chr11:60680219..60680235, +
1.6e-14FFCP PHASE1:Hg19::chr3:61876111..61876115,+#_8cb83ea2d06e15b694bb0ae8ea672d6cp@chr3:61876111..61876115, +
1.6e-14FFCP PHASE2:Hg19::chr3:61876111..61876115,+#_8cb83ea2d06e15b694bb0ae8ea672d6cp@chr3:61876111..61876115, +
1.6e-14FFCP PHASE1:Hg19::chr11:60680219..60680235,+#_8cb83ea2d06e15b694bb0ae8ea672d6cp@chr11:60680219..60680235, +
1.62e-14FFCP PHASE2:Hg19::chr2:217529087..217529099,+#_d7112876d22bb6db3b144e923690388bp@chr2:217529087..217529099, +
1.62e-14FFCP PHASE1:Hg19::chr12:15942091..15942108,-#_d7112876d22bb6db3b144e923690388bp13@EPS8
1.62e-14FFCP PHASE2:Hg19::chr12:15942091..15942108,-#_d7112876d22bb6db3b144e923690388bp13@EPS8
1.62e-14FFCP PHASE1:Hg19::chr2:217529087..217529099,+#_d7112876d22bb6db3b144e923690388bp@chr2:217529087..217529099, +
1.83e-14FFCP PHASE1:Hg19::chr9:16477370..16477375,-#_ebd1a53f31c2e61c86efca5c3dc3aa22p@chr9:16477370..16477375, -
1.83e-14FFCP PHASE2:Hg19::chr9:16477370..16477375,-#_ebd1a53f31c2e61c86efca5c3dc3aa22-, p@chr9:16477370..16477375
2.09e-14FFCP PHASE2:Hg19::chr11:74751521..74751532,+#_226809b7a180456f0d2dc380eea25af4p@chr11:74751521..74751532, +
2.09e-14FFCP PHASE1:Hg19::chr12:279860..279871,+#_226809b7a180456f0d2dc380eea25af4p@chr12:279860..279871, +
2.09e-14FFCP PHASE2:Hg19::chr12:279860..279871,+#_226809b7a180456f0d2dc380eea25af4p@chr12:279860..279871, +
2.09e-14FFCP PHASE1:Hg19::chr11:74751521..74751532,+#_226809b7a180456f0d2dc380eea25af4p@chr11:74751521..74751532, +
5.73e-14FFCP PHASE2:Hg19::chr1:103371056..103371072,-#_f2e3969318ba28fa34699d504acb3455p@chr1:103371056..103371072, -
5.73e-14FFCP PHASE1:Hg19::chr1:103371056..103371072,-#_f2e3969318ba28fa34699d504acb3455p@chr1:103371056..103371072, -
1.24e-13FFCP PHASE1:Hg19::chr6:35656232..35656237,-#_83eaf25e6f69206d233b9ca58256d554p@chr6:35656232..35656237, -
1.24e-13FFCP PHASE2:Hg19::chr6:35656232..35656237,-#_83eaf25e6f69206d233b9ca58256d554p@chr6:35656232..35656237, -
2.39e-13FFCP PHASE1:Hg19::chr3:79817162..79817175,-#_ee33659b5061542344a502814d5292bdp6@ROBO1
2.39e-13FFCP PHASE2:Hg19::chr3:79817162..79817175,-#_ee33659b5061542344a502814d5292bdp6@ROBO1
4.29e-13FFCP PHASE1:Hg19::chr10:96046777..96046788,-#_8895909f9c6bc35b6bf046e71f11461ap4@LOC100128054
4.29e-13FFCP PHASE2:Hg19::chr10:96046777..96046788,-#_8895909f9c6bc35b6bf046e71f11461ap4@LOC100128054
5.81e-13FFCP PHASE1:Hg19::chr4:86705464..86705469,+#_0d6bb0de9204df4fcdc358f3cbeb43ee+, p@chr4:86705464..86705469
5.81e-13FFCP PHASE2:Hg19::chr4:86705464..86705469,+#_0d6bb0de9204df4fcdc358f3cbeb43eep@chr4:86705464..86705469, +
5.85e-13FFCP PHASE1:Hg19::chr11:61568644..61568661,-#_072df91773fc208f83fd39b10776954cp17@FADS1
5.85e-13FFCP PHASE2:Hg19::chr11:61568644..61568661,-#_072df91773fc208f83fd39b10776954cp17@FADS1
8.13e-13FFCP PHASE2:Hg19::chr5:30104120..30104173,-#_511dc067d9f0300bf7b1d18003a2c0d7p@chr5:30104120..30104173, -
8.13e-13FFCP PHASE1:Hg19::chr5:30104120..30104173,-#_511dc067d9f0300bf7b1d18003a2c0d7p@chr5:30104120..30104173, -
1.26e-12FFCP PHASE2:Hg19::chr4:169706237..169706242,+#_b97480e5553d4ee9f4388f5b3c154f2ep@chr4:169706237..169706242, +
1.26e-12FFCP PHASE1:Hg19::chr4:169706237..169706242,+#_b97480e5553d4ee9f4388f5b3c154f2ep@chr4:169706237..169706242, +
2.07e-12FFCP PHASE2:Hg19::chr5:30104096..30104103,-#_8c95cd78c87ada4baf945d48f2b42effp@chr5:30104096..30104103, -
2.07e-12FFCP PHASE1:Hg19::chr5:30104096..30104103,-#_8c95cd78c87ada4baf945d48f2b42effp@chr5:30104096..30104103, -
2.07e-12FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_8c95cd78c87ada4baf945d48f2b42effp@chr3:146517344..146517356, +
2.07e-12FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_8c95cd78c87ada4baf945d48f2b42effp@chr3:146517344..146517356, +
2.31e-12FFCP PHASE1:Hg19::chr11:60615014..60615025,+#_fe86f9904bc21c7cfc68c67ea3a240e8p8@CCDC86
2.31e-12FFCP PHASE1:Hg19::chr5:149532703..149532711,+#_fe86f9904bc21c7cfc68c67ea3a240e8p@chr5:149532703..149532711, +
2.31e-12FFCP PHASE2:Hg19::chr11:60615014..60615025,+#_fe86f9904bc21c7cfc68c67ea3a240e8p8@CCDC86
2.31e-12FFCP PHASE2:Hg19::chr5:149532703..149532711,+#_fe86f9904bc21c7cfc68c67ea3a240e8p@chr5:149532703..149532711, +
2.59e-12FFCP PHASE2:Hg19::chr17:19282079..19282094,+#_ef72c81d6acd5030c1cc8019efd62921p14@MAPK7
2.59e-12FFCP PHASE2:Hg19::chr6:135196569..135196573,-#_ef72c81d6acd5030c1cc8019efd62921p@chr6:135196569..135196573, -
2.59e-12FFCP PHASE1:Hg19::chr17:19282079..19282094,+#_ef72c81d6acd5030c1cc8019efd62921p14@MAPK7
2.59e-12FFCP PHASE1:Hg19::chr6:135196569..135196573,-#_ef72c81d6acd5030c1cc8019efd62921p@chr6:135196569..135196573, -
2.89e-12FFCP PHASE1:Hg19::chr5:17604288..17604293,+#_37fc8f7c74aeca556f7d1327e3d2e076p@chr5:17604288..17604293, +
2.89e-12FFCP PHASE1:Hg19::chr3:147121835..147121852,-#_37fc8f7c74aeca556f7d1327e3d2e076p9@ZIC4
2.89e-12FFCP PHASE2:Hg19::chr3:147121835..147121852,-#_37fc8f7c74aeca556f7d1327e3d2e076p9@ZIC4
2.89e-12FFCP PHASE2:Hg19::chr14:61654180..61654191,+#_37fc8f7c74aeca556f7d1327e3d2e076p33@PRKCH
2.89e-12FFCP PHASE2:Hg19::chr4:178083004..178083050,-#_37fc8f7c74aeca556f7d1327e3d2e076p@chr4:178083004..178083050, -
2.89e-12FFCP PHASE2:Hg19::chr5:17604288..17604293,+#_37fc8f7c74aeca556f7d1327e3d2e076p@chr5:17604288..17604293, +
2.89e-12FFCP PHASE1:Hg19::chr14:61654180..61654191,+#_37fc8f7c74aeca556f7d1327e3d2e076p33@PRKCH
2.89e-12FFCP PHASE1:Hg19::chr4:178083004..178083050,-#_37fc8f7c74aeca556f7d1327e3d2e076p@chr4:178083004..178083050, -
3.24e-12FFCP PHASE2:Hg19::chr11:9879819..9879831,-#_750cb62f3db0ba7e3d118a5986aa0585p@chr11:9879819..9879831, -
3.24e-12FFCP PHASE1:Hg19::chr14:85705824..85705844,-#_750cb62f3db0ba7e3d118a5986aa0585p1@ENST00000556016
3.24e-12FFCP PHASE1:Hg19::chr11:9879819..9879831,-#_750cb62f3db0ba7e3d118a5986aa0585p@chr11:9879819..9879831, -
3.24e-12FFCP PHASE2:Hg19::chr14:85705824..85705844,-#_750cb62f3db0ba7e3d118a5986aa0585p1@ENST00000556016
5.51e-12FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_de41d7ea6e19c0f74cff610a5f27c8d3p17@CTGF
5.51e-12FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_de41d7ea6e19c0f74cff610a5f27c8d3p17@CTGF
1.31e-11FFCP PHASE2:Hg19::chr11:111685389..111685410,-#_cda99bb4c14d90c8b27000fd0ec535aep7@ALG9
1.31e-11FFCP PHASE1:Hg19::chr11:111685389..111685410,-#_cda99bb4c14d90c8b27000fd0ec535aep7@ALG9
1.57e-11FFCP PHASE2:Hg19::chr2:51577311..51577340,-#_abda4caeb71eca55608759c4ccb5dd26p@chr2:51577311..51577340, -
1.57e-11FFCP PHASE1:Hg19::chr2:51577311..51577340,-#_abda4caeb71eca55608759c4ccb5dd26p@chr2:51577311..51577340, -
1.59e-11FFCP PHASE2:Hg19::chr10:96046756..96046775,-#_edba3975527e76497abcca2cf551ba17p2@LOC100128054
1.59e-11FFCP PHASE1:Hg19::chr10:96046756..96046775,-#_edba3975527e76497abcca2cf551ba17p2@LOC100128054