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CL:0002612

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Name:neuron of the ventral spinal cord
Namespace:FANTOM
Definition:"A neuron of the ventral spinal cord." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T07:46:03Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000117(CNS neuron (sensu Vertebrata))
part_of:UBERON:0002257(ventral horn of spinal cord)



Children


derives from:FF:0000207 (mouse neuron of the ventral spinal cord sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
  • 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
  • 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)

Mouse (Mus musculus)

  • 11648-122E1 (Mouse Neurons - ventral spinal cord, donor3)
  • 11725-123D6 (Mouse Neurons - ventral spinal cord, donor1)
  • 11743-123F6 (Mouse Neurons - ventral spinal cord, donor2)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002612 (neuron of the ventral spinal cord), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.33e-65FFCP PHASE2:Mm9::chr11:96148092..96148105,+#_9645099b8561b1892ea2e0b639b67f99p@chr11:96148092..96148105, +
1.33e-65FFCP PHASE1:Mm9::chr11:96148092..96148105,+#_9645099b8561b1892ea2e0b639b67f99p@chr11:96148092..96148105, +
2.21e-65FFCP PHASE2:Mm9::chr7:94732458..94732467,+#_a926a64447ed98e921a572f9b6e21651p13@Grm5
2.21e-65FFCP PHASE1:Mm9::chr7:94732458..94732467,+#_a926a64447ed98e921a572f9b6e21651p13@Grm5
3.28e-58FFCP PHASE2:Mm9::chr5:23665663..23665666,+#_4123cea3a0ff324fe57d0a0e7b2092f6p@chr5:23665663..23665666, +
3.28e-58FFCP PHASE1:Mm9::chr5:23665663..23665666,+#_4123cea3a0ff324fe57d0a0e7b2092f6p@chr5:23665663..23665666, +
4.9e-53FFCP PHASE1:Mm9::chr5:77527885..77527900,+#_737c8205c3e54d215ccdf99fed1abbfcp@chr5:77527885..77527900, +
4.9e-53FFCP PHASE2:Mm9::chr5:77527885..77527900,+#_737c8205c3e54d215ccdf99fed1abbfcp@chr5:77527885..77527900, +
7.35e-53FFCP PHASE2:Mm9::chr12:47797986..47798011,-#_d8abc0a6cf2e40a7f9f4831a29c42a92p@chr12:47797986..47798011, -
7.35e-53FFCP PHASE1:Mm9::chr12:47797986..47798011,-#_d8abc0a6cf2e40a7f9f4831a29c42a92p@chr12:47797986..47798011, -
1.1e-52FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_21d82753bf3a722d88144ce159e67018p@chr18:84268738..84268777, -
1.1e-52FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_21d82753bf3a722d88144ce159e67018p@chr18:84268738..84268777, -
1.1e-52FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_21d82753bf3a722d88144ce159e67018p3@Prrxl1
1.1e-52FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_21d82753bf3a722d88144ce159e67018p3@Prrxl1
1.65e-52FFCP PHASE1:Mm9::chr10:101630272..101630276,+#_4cff3db22ffd7cccec642c19009e8bb7p@chr10:101630272..101630276, +
1.65e-52FFCP PHASE2:Mm9::chr10:101630272..101630276,+#_4cff3db22ffd7cccec642c19009e8bb7p@chr10:101630272..101630276, +
1.65e-52FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_4cff3db22ffd7cccec642c19009e8bb7p@chr11:96608388..96608420, +
1.65e-52FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_4cff3db22ffd7cccec642c19009e8bb7p@chr11:96608388..96608420, +
1.66e-44FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_6b5934e1d7128030b5cae3820eb01854p6@Hoxb8
1.66e-44FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_6b5934e1d7128030b5cae3820eb01854p6@Hoxb8
1.17e-38FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_384137167319a57758855de456d76aa7p@chr2:74530108..74530131, +
1.17e-38FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_384137167319a57758855de456d76aa7+, p@chr2:74530108..74530131
2.09e-38FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_7af1a0069f64a3c1353ce8f402d75ebbp8@Hoxb6
2.09e-38FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_7af1a0069f64a3c1353ce8f402d75ebbp8@Hoxb6
3.73e-38FFCP PHASE1:Mm9::chr11:96132544..96132553,+#_589ca8f5be5c01f8f1002a212feeded9p6@Hoxb9
3.73e-38FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_589ca8f5be5c01f8f1002a212feeded9p5@Hoxd10
3.73e-38FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_589ca8f5be5c01f8f1002a212feeded9p5@Hoxd10
3.73e-38FFCP PHASE2:Mm9::chr11:96132544..96132553,+#_589ca8f5be5c01f8f1002a212feeded9p6@Hoxb9
2.8e-37FFCP PHASE1:Mm9::chr7:6659121..6659133,-#_83d6a7545b05fb9a4a05482ed15a852bp@chr7:6659121..6659133, -
2.8e-37FFCP PHASE2:Mm9::chr7:6659121..6659133,-#_83d6a7545b05fb9a4a05482ed15a852bp@chr7:6659121..6659133, -
3.67e-34FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_2c22e665a57d86c57a068b02c15324b2p4@Hoxb9
3.67e-34FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_2c22e665a57d86c57a068b02c15324b2p4@Hoxb9
7.89e-34FFCP PHASE2:Mm9::chr12:110843236..110843239,+#_0e22a6fac25fceb80768d4382639854ep@chr12:110843236..110843239, +
7.89e-34FFCP PHASE1:Mm9::chr12:110843236..110843239,+#_0e22a6fac25fceb80768d4382639854ep@chr12:110843236..110843239, +
5.97e-33FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_303c5885d0c71fbb62ecdfe65e08d2fdp6@Slc6a5
5.97e-33FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_303c5885d0c71fbb62ecdfe65e08d2fdp6@Slc6a5
1.16e-30FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_c7e2ffcfec4d06bc8cc53c884967e023p3@Tlx3
1.16e-30FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_c7e2ffcfec4d06bc8cc53c884967e023p3@Tlx3
1.83e-30FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_523c703df16ea8bab0671592c13fe3d4p@chr11:96146541..96146544, +
1.83e-30FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_523c703df16ea8bab0671592c13fe3d4p@chr11:96146541..96146544, +
4.03e-30FFCP PHASE2:Mm9::chr8:33760116..33760119,-#_156a22c9e00fea737a7c711754b066dbp@chr8:33760116..33760119, -
4.03e-30FFCP PHASE1:Mm9::chr8:33760116..33760119,-#_156a22c9e00fea737a7c711754b066dbp@chr8:33760116..33760119, -
5.64e-30FFCP PHASE2:Mm9::chr12:47886256..47886259,-#_70b68a16154d603dc837e7d80530472c-, p@chr12:47886256..47886259
5.64e-30FFCP PHASE1:Mm9::chr5:89666281..89666294,+#_70b68a16154d603dc837e7d80530472cp@chr5:89666281..89666294, +
5.64e-30FFCP PHASE2:Mm9::chr5:89666281..89666294,+#_70b68a16154d603dc837e7d80530472cp@chr5:89666281..89666294, +
5.64e-30FFCP PHASE1:Mm9::chr12:47886256..47886259,-#_70b68a16154d603dc837e7d80530472c-, p@chr12:47886256..47886259
5.7e-30FFCP PHASE2:Mm9::chr11:104171794..104171805,+#_4a8089440ee8d94ba1ef81a76299b3f6p@chr11:104171794..104171805, +
5.7e-30FFCP PHASE1:Mm9::chr11:104171794..104171805,+#_4a8089440ee8d94ba1ef81a76299b3f6p@chr11:104171794..104171805, +
7.89e-30FFCP PHASE2:Mm9::chr4:58340140..58340151,+#_7c2e4203e1367df234ed1d3384e3b7adp@chr4:58340140..58340151, +
7.89e-30FFCP PHASE1:Mm9::chr4:58340140..58340151,+#_7c2e4203e1367df234ed1d3384e3b7adp@chr4:58340140..58340151, +
1.4e-29FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_ead2570d921b07e2d56dd110cd86c979p1@Uts2
1.4e-29FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_ead2570d921b07e2d56dd110cd86c979p1@Uts2
1.4e-29FFCP PHASE2:Mm9::chr14:94197171..94197177,-#_ead2570d921b07e2d56dd110cd86c979p@chr14:94197171..94197177, -
1.4e-29FFCP PHASE1:Mm9::chr14:94197171..94197177,-#_ead2570d921b07e2d56dd110cd86c979p@chr14:94197171..94197177, -
1.54e-29FFCP PHASE2:Mm9::chr8:84578004..84578010,+#_f925e9ce637815351db2955e37790349p@chr8:84578004..84578010, +
1.54e-29FFCP PHASE1:Mm9::chr8:84578004..84578010,+#_f925e9ce637815351db2955e37790349p@chr8:84578004..84578010, +
1.11e-27FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_477bc43f8d4ba48d1d94e5b739901582p@chr2:70399563..70399583, +
1.11e-27FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_477bc43f8d4ba48d1d94e5b739901582p1@Gbx1
1.11e-27FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_477bc43f8d4ba48d1d94e5b739901582p@chr2:70399563..70399583, +
1.11e-27FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_477bc43f8d4ba48d1d94e5b739901582p1@Gbx1
2.06e-27FFCP PHASE1:Mm9::chrX:98516253..98516269,+#_8b8d3eddd67df4123caf6e91b0781be1p@chrX:98516253..98516269, +
2.06e-27FFCP PHASE2:Mm9::chrX:98516253..98516269,+#_8b8d3eddd67df4123caf6e91b0781be1p@chrX:98516253..98516269, +
3.1e-27FFCP PHASE1:Mm9::chr13:97841582..97841592,+#_b4089d3bb42c049d948728c7dde56df9p5@Fam169a
3.1e-27FFCP PHASE2:Mm9::chr7:144388046..144388053,-#_b4089d3bb42c049d948728c7dde56df9p@chr7:144388046..144388053, -
3.1e-27FFCP PHASE2:Mm9::chr13:97841582..97841592,+#_b4089d3bb42c049d948728c7dde56df9p5@Fam169a
3.1e-27FFCP PHASE1:Mm9::chr7:144388046..144388053,-#_b4089d3bb42c049d948728c7dde56df9p@chr7:144388046..144388053, -
4.66e-27FFCP PHASE2:Mm9::chr10:59862497..59862520,+#_cf15ac2eaba6e9c255f886cb74cdb7e8p2@Gm17455
4.66e-27FFCP PHASE1:Mm9::chr10:59862497..59862520,+#_cf15ac2eaba6e9c255f886cb74cdb7e8p2@Gm17455
6.99e-27FFCP PHASE2:Mm9::chr2:180625404..180625417,+#_4d25b7c5f413e26d8e4d9a12417cdfd1p@chr2:180625404..180625417, +
6.99e-27FFCP PHASE1:Mm9::chr2:180625404..180625417,+#_4d25b7c5f413e26d8e4d9a12417cdfd1p@chr2:180625404..180625417, +
8.55e-27FFCP PHASE1:Mm9::chr7:57165453..57165473,+#_67a87400edd818e965d7eb348b787df5p3@Slc6a5
8.55e-27FFCP PHASE2:Mm9::chr7:57165453..57165473,+#_67a87400edd818e965d7eb348b787df5p3@Slc6a5
2.12e-25FFCP PHASE1:Mm9::chr2:135885511..135885540,+#_c8f8e50b1c108e318dcdc7bad1725b02p@chr2:135885511..135885540, +
2.12e-25FFCP PHASE2:Mm9::chr2:135885511..135885540,+#_c8f8e50b1c108e318dcdc7bad1725b02p@chr2:135885511..135885540, +
2.56e-25FFCP PHASE1:Mm9::chr2:135883447..135883459,+#_2ad9f48a9168856cedbb2b0e274dff23p12@6330527O06Rik
2.56e-25FFCP PHASE2:Mm9::chr13:97419784..97419792,-#_2ad9f48a9168856cedbb2b0e274dff23p@chr13:97419784..97419792, -
2.56e-25FFCP PHASE1:Mm9::chr13:97419784..97419792,-#_2ad9f48a9168856cedbb2b0e274dff23p@chr13:97419784..97419792, -
2.56e-25FFCP PHASE2:Mm9::chr2:135883447..135883459,+#_2ad9f48a9168856cedbb2b0e274dff23p12@6330527O06Rik
9.4e-25FFCP PHASE1:Mm9::chr15:102355046..102355050,-#_668d6ffe2d5a3d030e3c9081acbbb85bp1@Npff
9.4e-25FFCP PHASE1:Mm9::chr7:57165576..57165593,+#_668d6ffe2d5a3d030e3c9081acbbb85bp5@Slc6a5
9.4e-25FFCP PHASE2:Mm9::chr15:102355046..102355050,-#_668d6ffe2d5a3d030e3c9081acbbb85bp1@Npff
9.4e-25FFCP PHASE2:Mm9::chr7:57165576..57165593,+#_668d6ffe2d5a3d030e3c9081acbbb85bp5@Slc6a5
1.13e-24FFCP PHASE1:Mm9::chr5:65522238..65522249,+#_cb58e0a672d58e0a65bdf374c513c6bap9@Klhl5
1.13e-24FFCP PHASE2:Mm9::chr5:65522238..65522249,+#_cb58e0a672d58e0a65bdf374c513c6bap9@Klhl5
1.74e-24FFCP PHASE2:Mm9::chr7:64495660..64495664,-#_ecea4d24a70bc281453e1d60a9712934p@chr7:64495660..64495664, -
1.74e-24FFCP PHASE1:Mm9::chr7:64495660..64495664,-#_ecea4d24a70bc281453e1d60a9712934p@chr7:64495660..64495664, -
2.28e-24FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_e3eb06d5e7cf06d16d8658b19de7887ap@chr2:70053872..70053879, +
2.28e-24FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_e3eb06d5e7cf06d16d8658b19de7887ap@chr2:70053872..70053879, +
2.36e-24FFCP PHASE1:Mm9::chr7:57165629..57165651,+#_8bf73bb44cdadff56302256450bb292ep4@Slc6a5
2.36e-24FFCP PHASE2:Mm9::chr7:57165629..57165651,+#_8bf73bb44cdadff56302256450bb292ep4@Slc6a5
2.99e-24FFCP PHASE2:Mm9::chr1:66486342..66486351,+#_ced56994f3f6766934efa6fb893f9429p@chr1:66486342..66486351, +
2.99e-24FFCP PHASE1:Mm9::chr7:67121440..67121451,-#_ced56994f3f6766934efa6fb893f9429p@chr7:67121440..67121451, -
2.99e-24FFCP PHASE1:Mm9::chr1:66486342..66486351,+#_ced56994f3f6766934efa6fb893f9429p@chr1:66486342..66486351, +
2.99e-24FFCP PHASE1:Mm9::chr11:33103551..33103561,-#_ced56994f3f6766934efa6fb893f9429p4@Tlx3
2.99e-24FFCP PHASE2:Mm9::chr7:67121440..67121451,-#_ced56994f3f6766934efa6fb893f9429p@chr7:67121440..67121451, -
2.99e-24FFCP PHASE2:Mm9::chr11:33103551..33103561,-#_ced56994f3f6766934efa6fb893f9429p4@Tlx3
3.91e-24FFCP PHASE2:Mm9::chr12:85023868..85023879,+#_1c503aa2de7d1797e98b576a202e7058p@chr12:85023868..85023879, +
3.91e-24FFCP PHASE1:Mm9::chr12:85023868..85023879,+#_1c503aa2de7d1797e98b576a202e7058p@chr12:85023868..85023879, +
4.08e-24FFCP PHASE2:Mm9::chr11:83696202..83696230,+#_e9dce254050c201ac4de6d85b45ce258p@chr11:83696202..83696230, +
4.08e-24FFCP PHASE1:Mm9::chr11:83696202..83696230,+#_e9dce254050c201ac4de6d85b45ce258p@chr11:83696202..83696230, +