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CL:0002614

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Name:neuron of the substantia nigra
Namespace:FANTOM
Definition:"A neuron of the substantia nigra." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T07:48:42Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000117(CNS neuron (sensu Vertebrata))
part_of:UBERON:0002038(substantia nigra)



Children


derives from:FF:0000208 (mouse neuron of the substantia nigra sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002614 (neuron of the substantia nigra), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.97e-44FFCP PHASE2:Mm9::chr4:134073493..134073502,-#_82c7d7389bd89ac945d686e54b1bbf88p@chr4:134073493..134073502, -
8.97e-44FFCP PHASE1:Mm9::chr4:134073493..134073502,-#_82c7d7389bd89ac945d686e54b1bbf88p@chr4:134073493..134073502, -
1.7e-39FFCP PHASE1:Mm9::chr2:25324505..25324513,+#_7acb5c4a8a7b93134c8b37d6dfc2259ap@chr2:25324505..25324513, +
1.7e-39FFCP PHASE1:Mm9::chr2:25324524..25324534,+#_7acb5c4a8a7b93134c8b37d6dfc2259ap@chr2:25324524..25324534, +
1.7e-39FFCP PHASE2:Mm9::chr2:25324505..25324513,+#_7acb5c4a8a7b93134c8b37d6dfc2259ap@chr2:25324505..25324513, +
1.7e-39FFCP PHASE2:Mm9::chr2:25324524..25324534,+#_7acb5c4a8a7b93134c8b37d6dfc2259ap@chr2:25324524..25324534, +
2.09e-38FFCP PHASE2:Mm9::chr1:68827407..68827408,-#_b75a72414271c2155623f119c5a10ff5p@chr1:68827407..68827408, -
2.09e-38FFCP PHASE1:Mm9::chr1:68827407..68827408,-#_b75a72414271c2155623f119c5a10ff5p@chr1:68827407..68827408, -
8.86e-38FFCP PHASE1:Mm9::chr9:120089539..120089582,-#_478614e1cfb3bdcc35b6cc4f57e477a5p@chr9:120089539..120089582, -
8.86e-38FFCP PHASE2:Mm9::chr9:120089539..120089582,-#_478614e1cfb3bdcc35b6cc4f57e477a5p@chr9:120089539..120089582, -
1.31e-33FFCP PHASE2:Mm9::chr14:54813640..54813649,+#_1e53429c7285414ec866ab4f1b0a2563+, p@chr14:54813640..54813649
1.31e-33FFCP PHASE1:Mm9::chr14:54813640..54813649,+#_1e53429c7285414ec866ab4f1b0a2563p@chr14:54813640..54813649, +
3.61e-33FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_1ba050d63fa3c91587af5d61fddb7bf2p@chr19:40804786..40804795, -
3.61e-33FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_1ba050d63fa3c91587af5d61fddb7bf2p@chr19:40804786..40804795, -
5.97e-33FFCP PHASE2:Mm9::chr15:59373755..59373758,-#_fd9445045005f976f866c795585bb22dp@chr15:59373755..59373758, -
5.97e-33FFCP PHASE1:Mm9::chr15:59373755..59373758,-#_fd9445045005f976f866c795585bb22dp@chr15:59373755..59373758, -
1.27e-32FFCP PHASE2:Mm9::chr3:95023652..95023663,-#_7c2d0aed369516d03c8f91596733df23p@chr3:95023652..95023663, -
1.27e-32FFCP PHASE1:Mm9::chr3:95023652..95023663,-#_7c2d0aed369516d03c8f91596733df23p@chr3:95023652..95023663, -
5.61e-30FFCP PHASE1:Mm9::chr7:142460262..142460264,+#_4b92c3bed0e6c78cf451eb7e9515de0cp1@Nps
5.61e-30FFCP PHASE2:Mm9::chr7:142460262..142460264,+#_4b92c3bed0e6c78cf451eb7e9515de0cp1@Nps
7.14e-30FFCP PHASE1:Mm9::chr8:74243126..74243137,-#_5152984740a602872710bfe8fa74a368p@chr8:74243126..74243137, -
7.14e-30FFCP PHASE2:Mm9::chr8:74243126..74243137,-#_5152984740a602872710bfe8fa74a368p@chr8:74243126..74243137, -
7.89e-30FFCP PHASE2:Mm9::chr1:196844789..196844794,+#_069f81120365ba95d9cdcb3528bd54edp13@A330023F24Rik
7.89e-30FFCP PHASE1:Mm9::chr1:196844789..196844794,+#_069f81120365ba95d9cdcb3528bd54edp13@A330023F24Rik
7.89e-30FFCP PHASE1:Mm9::chr3:128902824..128902831,+#_069f81120365ba95d9cdcb3528bd54edp14@Pitx2
7.89e-30FFCP PHASE2:Mm9::chr3:128902824..128902831,+#_069f81120365ba95d9cdcb3528bd54edp14@Pitx2
1.54e-29FFCP PHASE1:Mm9::chr9:120088982..120088991,+#_4e81800036c5b441df7f988ccb506fbep@chr9:120088982..120088991, +
1.54e-29FFCP PHASE2:Mm9::chr9:120088982..120088991,+#_4e81800036c5b441df7f988ccb506fbep@chr9:120088982..120088991, +
2.74e-29FFCP PHASE2:Mm9::chr4:98861314..98861320,-#_2dc28069e5b1470fd3641891d9d8fd5fp@chr4:98861314..98861320, -
2.74e-29FFCP PHASE1:Mm9::chr4:98861314..98861320,-#_2dc28069e5b1470fd3641891d9d8fd5fp@chr4:98861314..98861320, -
1.68e-27FFCP PHASE2:Mm9::chr2:164317532..164317534,+#_db2558b3b495c493edf7f7a32cae22fep@chr2:164317532..164317534, +
1.68e-27FFCP PHASE2:Mm9::chr16:31311157..31311167,-#_db2558b3b495c493edf7f7a32cae22fep7@Apod, p7@LOC100047583
1.68e-27FFCP PHASE1:Mm9::chr16:31311157..31311167,-#_db2558b3b495c493edf7f7a32cae22fep7@Apod, p7@LOC100047583
1.68e-27FFCP PHASE1:Mm9::chr2:164317532..164317534,+#_db2558b3b495c493edf7f7a32cae22fep@chr2:164317532..164317534, +
3.8e-27FFCP PHASE2:Mm9::chr18:82753999..82754008,+#_453032cf80b28e0df540a376578f7338p@chr18:82753999..82754008, +
3.8e-27FFCP PHASE1:Mm9::chr18:82753999..82754008,+#_453032cf80b28e0df540a376578f7338+, p@chr18:82753999..82754008
4.66e-27FFCP PHASE2:Mm9::chr9:25062848..25062873,+#_1aef14bea39a6f7a459ca49bd6f0b4cbp@chr9:25062848..25062873, +
4.66e-27FFCP PHASE1:Mm9::chr9:25062848..25062873,+#_1aef14bea39a6f7a459ca49bd6f0b4cbp@chr9:25062848..25062873, +
5.7e-27FFCP PHASE1:Mm9::chr11:115854417..115854426,+#_0f1b43787c89336fdc0f1504faee081ep12@Itgb4
5.7e-27FFCP PHASE2:Mm9::chr11:115854417..115854426,+#_0f1b43787c89336fdc0f1504faee081ep12@Itgb4
1.05e-26FFCP PHASE1:Mm9::chrX:61750178..61750185,+#_93d5d1aad6b6776c096dc50d75c2efd2p@chrX:61750178..61750185, +
1.05e-26FFCP PHASE2:Mm9::chrX:61750178..61750185,+#_93d5d1aad6b6776c096dc50d75c2efd2p@chrX:61750178..61750185, +
2.34e-26FFCP PHASE1:Mm9::chr4:62131958..62131966,-#_95d75c5a14c71825cb522ee0f0858e77p2@Wdr31
2.34e-26FFCP PHASE2:Mm9::chr4:62131958..62131966,-#_95d75c5a14c71825cb522ee0f0858e77p2@Wdr31
6.49e-25FFCP PHASE2:Mm9::chr11:115854376..115854386,+#_3ac8d0305e1f57fdb55306db71b7b9aap11@Itgb4
6.49e-25FFCP PHASE1:Mm9::chr11:115854376..115854386,+#_3ac8d0305e1f57fdb55306db71b7b9aap11@Itgb4
9.4e-25FFCP PHASE1:Mm9::chr9:120088834..120088845,+#_d9fe434612a32b3a4e2946cabf6032cep@chr9:120088834..120088845, +
9.4e-25FFCP PHASE2:Mm9::chr9:120088834..120088845,+#_d9fe434612a32b3a4e2946cabf6032cep@chr9:120088834..120088845, +
1.13e-24FFCP PHASE2:Mm9::chr3:88022163..88022168,+#_4601bd3be404a9317a681c6dc4645468+, p@chr3:88022163..88022168
1.13e-24FFCP PHASE1:Mm9::chr3:88022163..88022168,+#_4601bd3be404a9317a681c6dc4645468p@chr3:88022163..88022168, +
1.36e-24FFCP PHASE2:Mm9::chr9:44961019..44961022,+#_cc62f635adad73f2b33aa24f12884d81p@chr9:44961019..44961022, +
1.36e-24FFCP PHASE1:Mm9::chr9:44961019..44961022,+#_cc62f635adad73f2b33aa24f12884d81p@chr9:44961019..44961022, +
1.63e-24FFCP PHASE2:Mm9::chr7:58877682..58877687,+#_df53b89973e3ab72aeb49408ce81fb26p16@Slc17a6
1.63e-24FFCP PHASE1:Mm9::chr7:58877682..58877687,+#_df53b89973e3ab72aeb49408ce81fb26p16@Slc17a6
1.74e-24FFCP PHASE1:Mm9::chr11:36917853..36917855,-#_65fedb7d609c0ae30034691bf3c78890p@chr11:36917853..36917855, -
1.74e-24FFCP PHASE2:Mm9::chr11:36917853..36917855,-#_65fedb7d609c0ae30034691bf3c78890p@chr11:36917853..36917855, -
1.74e-24FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_65fedb7d609c0ae30034691bf3c78890p@chr8:108091532..108091548, -
1.74e-24FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_65fedb7d609c0ae30034691bf3c78890p@chr8:108091532..108091548, -
3.91e-24FFCP PHASE1:Mm9::chr18:82754158..82754162,+#_273c92222eb6bbed2e847727bdaad69a+, p@chr18:82754158..82754162
3.91e-24FFCP PHASE2:Mm9::chr18:82754158..82754162,+#_273c92222eb6bbed2e847727bdaad69ap@chr18:82754158..82754162, +
6.68e-24FFCP PHASE1:Mm9::chrX:133372432..133372442,-#_e57a83f769f300236080cc30db91c9dap@chrX:133372432..133372442, -
6.68e-24FFCP PHASE2:Mm9::chrX:133372432..133372442,-#_e57a83f769f300236080cc30db91c9dap@chrX:133372432..133372442, -
8.72e-24FFCP PHASE1:Mm9::chr11:55421712..55421719,-#_2270eaff4369786a7c2056bdab4fb282p10@Glra1
8.72e-24FFCP PHASE2:Mm9::chr11:55421712..55421719,-#_2270eaff4369786a7c2056bdab4fb282p10@Glra1
1.19e-23FFCP PHASE1:Mm9::chr2:25324631..25324642,-#_f5abc370b6d3116bea4eee6a3593ef6ep8@Ptgds
1.19e-23FFCP PHASE2:Mm9::chr2:25324631..25324642,-#_f5abc370b6d3116bea4eee6a3593ef6ep8@Ptgds
1.42e-23FFCP PHASE2:Mm9::chr5:27925423..27925425,+#_9145047e9bde556153700b24ed5a8df9p@chr5:27925423..27925425, +
1.42e-23FFCP PHASE1:Mm9::chr5:27925423..27925425,+#_9145047e9bde556153700b24ed5a8df9p@chr5:27925423..27925425, +
1.69e-23FFCP PHASE1:Mm9::chr4:132999231..132999250,+#_34e39475d2601989a83f0fa3e928d329p@chr4:132999231..132999250, +
1.69e-23FFCP PHASE2:Mm9::chr4:132999231..132999250,+#_34e39475d2601989a83f0fa3e928d329p@chr4:132999231..132999250, +
2.38e-23FFCP PHASE2:Mm9::chr9:120089048..120089059,+#_484d5b3b72c115e7e8e6bc6b511802ccp@chr9:120089048..120089059, +
2.38e-23FFCP PHASE1:Mm9::chr9:120089048..120089059,+#_484d5b3b72c115e7e8e6bc6b511802ccp@chr9:120089048..120089059, +
3.35e-23FFCP PHASE2:Mm9::chr11:110858858..110858866,+#_ffe0c40c5e95a15154563767f68e6cf7p7@Kcnj16
3.35e-23FFCP PHASE1:Mm9::chr11:110858858..110858866,+#_ffe0c40c5e95a15154563767f68e6cf7p7@Kcnj16
3.98e-23FFCP PHASE2:Mm9::chr1:183734229..183734244,+#_ec9de59e0e3fcfb4c6a3509746805037p@chr1:183734229..183734244, +
3.98e-23FFCP PHASE1:Mm9::chr1:183734229..183734244,+#_ec9de59e0e3fcfb4c6a3509746805037p@chr1:183734229..183734244, +
3.98e-23FFCP PHASE2:Mm9::chr8:28524409..28524418,-#_ec9de59e0e3fcfb4c6a3509746805037p2@Chrna6
3.98e-23FFCP PHASE1:Mm9::chr8:28524409..28524418,-#_ec9de59e0e3fcfb4c6a3509746805037p2@Chrna6
4.72e-23FFCP PHASE1:Mm9::chr11:67466050..67466065,+#_7790cd09adbe43109539aa3bb9ba95edp24@Gas7
4.72e-23FFCP PHASE1:Mm9::chr6:54516272..54516275,-#_7790cd09adbe43109539aa3bb9ba95edp9@Scrn1
4.72e-23FFCP PHASE2:Mm9::chr11:67466050..67466065,+#_7790cd09adbe43109539aa3bb9ba95edp24@Gas7
4.72e-23FFCP PHASE2:Mm9::chr6:54516272..54516275,-#_7790cd09adbe43109539aa3bb9ba95edp9@Scrn1
7.86e-23FFCP PHASE2:Mm9::chr15:82086756..82086763,+#_5c73b0f36be345a43e4384d4139ffb84p4@1500009C09Rik
7.86e-23FFCP PHASE1:Mm9::chr15:82086756..82086763,+#_5c73b0f36be345a43e4384d4139ffb84p4@1500009C09Rik
1.1e-22FFCP PHASE2:Mm9::chr1:152239838..152239843,-#_2d5302969db7c638af2f8dae3f3bc10ep7@BC003331
1.1e-22FFCP PHASE1:Mm9::chr1:152239838..152239843,-#_2d5302969db7c638af2f8dae3f3bc10ep7@BC003331
1.31e-22FFCP PHASE1:Mm9::chr13:25361035..25361082,-#_24ca8d7c958358d6988c117586c5ce4fp@chr13:25361035..25361082, -
1.31e-22FFCP PHASE2:Mm9::chr13:25361035..25361082,-#_24ca8d7c958358d6988c117586c5ce4fp@chr13:25361035..25361082, -
1.55e-22FFCP PHASE1:Mm9::chr9:120088783..120088795,+#_6ca6f00b7a67f511bab93c571ded7e57p@chr9:120088783..120088795, +
1.55e-22FFCP PHASE2:Mm9::chr9:120088783..120088795,+#_6ca6f00b7a67f511bab93c571ded7e57p@chr9:120088783..120088795, +
1.83e-22FFCP PHASE1:Mm9::chr2:70401593..70401604,+#_fa0ff9e8300f786dd22c1079c2e0ff77p15@Gad1
1.83e-22FFCP PHASE1:Mm9::chrX:132335433..132335444,+#_fa0ff9e8300f786dd22c1079c2e0ff77p@chrX:132335433..132335444, +
1.83e-22FFCP PHASE2:Mm9::chrX:132335433..132335444,+#_fa0ff9e8300f786dd22c1079c2e0ff77p@chrX:132335433..132335444, +
1.83e-22FFCP PHASE2:Mm9::chr2:70401593..70401604,+#_fa0ff9e8300f786dd22c1079c2e0ff77p15@Gad1
3.58e-22FFCP PHASE1:Mm9::chr5:48991226..48991239,-#_b88c63b8faf09a493cf43ceab403296ap7@Kcnip4
3.58e-22FFCP PHASE2:Mm9::chr5:48991226..48991239,-#_b88c63b8faf09a493cf43ceab403296ap7@Kcnip4
4.23e-22FFCP PHASE1:Mm9::chr13:83869274..83869285,-#_91d5315baa446a3cdfad90aa97fd2161p4@ENSMUST00000171323, p4@uc011zcg.1
4.23e-22FFCP PHASE2:Mm9::chr13:83869274..83869285,-#_91d5315baa446a3cdfad90aa97fd2161p4@ENSMUST00000171323, p4@uc011zcg.1
4.98e-22FFCP PHASE1:Mm9::chr6:58856244..58856255,-#_44673e2fb72ed22369ba62a754008f80p@chr6:58856244..58856255, -
4.98e-22FFCP PHASE2:Mm9::chr6:58856244..58856255,-#_44673e2fb72ed22369ba62a754008f80p@chr6:58856244..58856255, -