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CL:0002677

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Name:naive regulatory T cell
Namespace:FANTOM
Definition:"A regulatory T cell that has not encountered antigen." [GOC:tfm]
Comments:This cell type has been described as CD45RA-negative, but this doesn't fit with our current definition of naive T cell.
Created by:tmeehan
Creation date:2011-08-25T03:17:21Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000792(CD4-positive, CD25-positive, alpha-beta regulatory T cell),CL:0000898(naive T cell)



Children


is a:FF:0011127 (CD4-positiveCD25-positiveCD45RA- naive regulatory T cells expanded),FF:11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1),FF:11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
derives from:FF:0011128 (human CD4-positiveCD25-positiveCD45RA- naive regulatory T cells sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
  • 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)

Mouse (Mus musculus)

  • 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
  • 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002677 (naive regulatory T cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.61e-131FFCP PHASE2:Hg19::chr1:113160702..113160706,-#_68c8bf854f3083761ccaf4945f930d9fp21@ST7L
4.61e-131FFCP PHASE1:Hg19::chr1:113160702..113160706,-#_68c8bf854f3083761ccaf4945f930d9fp21@ST7L
5.68e-99FFCP PHASE1:Hg19::chr11:111410267..111410269,+#_ce87f1a7fd4facdab8d60dad3343c472p@chr11:111410267..111410269, +
5.68e-99FFCP PHASE2:Hg19::chr11:111410267..111410269,+#_ce87f1a7fd4facdab8d60dad3343c472p@chr11:111410267..111410269, +
1.55e-98FFCP PHASE1:Hg19::chr3:73015629..73015632,+#_d544f4621466933ee6afa55cc614a23cp@chr3:73015629..73015632, +
1.55e-98FFCP PHASE2:Hg19::chr3:73015629..73015632,+#_d544f4621466933ee6afa55cc614a23cp@chr3:73015629..73015632, +
1.05e-79FFCP PHASE1:Hg19::chr6:138115457..138115471,+#_67397f9b6520f63aa509bdd4a2606fe3p@chr6:138115457..138115471, +
1.05e-79FFCP PHASE2:Hg19::chr6:138115457..138115471,+#_67397f9b6520f63aa509bdd4a2606fe3p@chr6:138115457..138115471, +
5.22e-79FFCP PHASE1:Hg19::chr7:142013392..142013402,+#_cbf9996739135afb6d442537a1d69d09p1@AF428125, p1@AF428127, p1@AY123171, p1@AY123177, p1@AY123180, p1@AY123183, p1@AY190091, p1@AY190112, p1@AY751872, p1@DQ875564, p1@EF592013, p1@S79336
5.22e-79FFCP PHASE2:Hg19::chr7:142013392..142013402,+#_cbf9996739135afb6d442537a1d69d09p1@AF428125, p1@AF428127, p1@AY123171, p1@AY123177, p1@AY123180, p1@AY123183, p1@AY190091, p1@AY190112, p1@AY751872, p1@DQ875564, p1@EF592013, p1@S79336
1.04e-66FFCP PHASE1:Hg19::chr19:42145518..42145524,+#_216955f300f9e2fcc375644d5b33a085p@chr19:42145518..42145524, +
1.04e-66FFCP PHASE1:Hg19::chr2:69871669..69871678,+#_216955f300f9e2fcc375644d5b33a085p9@ENST00000418066
1.04e-66FFCP PHASE2:Hg19::chr19:42145518..42145524,+#_216955f300f9e2fcc375644d5b33a085p@chr19:42145518..42145524, +
1.04e-66FFCP PHASE2:Hg19::chr2:69871669..69871678,+#_216955f300f9e2fcc375644d5b33a085p9@ENST00000418066
1.45e-66FFCP PHASE2:Hg19::chr19:42132832..42132865,+#_8bb7c1bf6f96f3aef6d56910f52aa2dbp@chr19:42132832..42132865, +
1.45e-66FFCP PHASE1:Hg19::chr19:42132832..42132865,+#_8bb7c1bf6f96f3aef6d56910f52aa2dbp@chr19:42132832..42132865, +
2.84e-66FFCP PHASE1:Hg19::chr10:17697543..17697546,-#_e5999edf3fbc810b1f33f14c04d281e2p@chr10:17697543..17697546, -
2.84e-66FFCP PHASE2:Hg19::chr10:17697543..17697546,-#_e5999edf3fbc810b1f33f14c04d281e2p@chr10:17697543..17697546, -
2.02e-57FFCP PHASE1:Hg19::chr11:95421442..95421475,-#_431f7da3d3e005e202cf96ef27dfe885p@chr11:95421442..95421475, -
2.02e-57FFCP PHASE2:Hg19::chr18:13382698..13382707,+#_431f7da3d3e005e202cf96ef27dfe885p@chr18:13382698..13382707, +
2.02e-57FFCP PHASE2:Hg19::chr11:95421442..95421475,-#_431f7da3d3e005e202cf96ef27dfe885p@chr11:95421442..95421475, -
2.02e-57FFCP PHASE1:Hg19::chr18:13382698..13382707,+#_431f7da3d3e005e202cf96ef27dfe885p@chr18:13382698..13382707, +
3.58e-57FFCP PHASE2:Hg19::chr12:122239669..122239674,-#_3407db155b376d5b71d17ed5021e2e3dp6@ENST00000535614
3.58e-57FFCP PHASE1:Hg19::chr12:122239669..122239674,-#_3407db155b376d5b71d17ed5021e2e3dp6@ENST00000535614
4.77e-57FFCP PHASE2:Hg19::chr16:22546145..22546152,+#_c443bba229a1b000c8c6f075bec22db8p@chr16:22546145..22546152, +
4.77e-57FFCP PHASE1:Hg19::chr16:22546145..22546152,+#_c443bba229a1b000c8c6f075bec22db8p@chr16:22546145..22546152, +
8.47e-57FFCP PHASE1:Hg19::chr10:24911304..24911311,+#_be73359dc5e472d4ae69746b03285a4ap@chr10:24911304..24911311, +
8.47e-57FFCP PHASE2:Hg19::chr10:24911304..24911311,+#_be73359dc5e472d4ae69746b03285a4a+, p@chr10:24911304..24911311
1.46e-50FFCP PHASE2:Hg19::chr2:213963849..213963858,-#_23c29a3ad10be9ab9cd9b52d3b9d9559p@chr2:213963849..213963858, -
1.46e-50FFCP PHASE1:Hg19::chr2:213963849..213963858,-#_23c29a3ad10be9ab9cd9b52d3b9d9559p@chr2:213963849..213963858, -
1.46e-50FFCP PHASE1:Hg19::chr21:47035633..47035642,+#_23c29a3ad10be9ab9cd9b52d3b9d9559p@chr21:47035633..47035642, +
1.46e-50FFCP PHASE2:Hg19::chr21:47035633..47035642,+#_23c29a3ad10be9ab9cd9b52d3b9d9559p@chr21:47035633..47035642, +
2.42e-50FFCP PHASE1:Hg19::chr8:1709009..1709019,-#_bad55848b2022a10d987f7457334cf68p1@BC025336
2.42e-50FFCP PHASE2:Hg19::chr8:1709009..1709019,-#_bad55848b2022a10d987f7457334cf68p1@BC025336
2.42e-50FFCP PHASE1:Hg19::chr1:186287725..186287734,-#_bad55848b2022a10d987f7457334cf68p@chr1:186287725..186287734, -
2.42e-50FFCP PHASE2:Hg19::chr1:186287725..186287734,-#_bad55848b2022a10d987f7457334cf68p@chr1:186287725..186287734, -
4.52e-50FFCP PHASE1:Hg19::chr7:105441012..105441027,-#_4656ecd56283480a4e92541ff8de696cp@chr7:105441012..105441027, -
4.52e-50FFCP PHASE2:Hg19::chr7:105441012..105441027,-#_4656ecd56283480a4e92541ff8de696cp@chr7:105441012..105441027, -
5.15e-50FFCP PHASE1:Hg19::chr5:14993035..14993045,+#_a0fd645df664b5f79b0146823f0968e6p@chr5:14993035..14993045, +
5.15e-50FFCP PHASE2:Hg19::chr5:14993035..14993045,+#_a0fd645df664b5f79b0146823f0968e6p@chr5:14993035..14993045, +
2.55e-45FFCP PHASE2:Hg19::chrX:153238522..153238533,-#_71da15846bb4808dc1e78b6d5bfb406fp@chrX:153238522..153238533, -
2.55e-45FFCP PHASE1:Hg19::chrX:153238522..153238533,-#_71da15846bb4808dc1e78b6d5bfb406fp@chrX:153238522..153238533, -
3.19e-45FFCP PHASE2:Hg19::chr3:66444556..66444563,-#_35395ca216e7d06790ad0fa8ab70f888p@chr3:66444556..66444563, -
3.19e-45FFCP PHASE2:Hg19::chr19:42145229..42145239,+#_35395ca216e7d06790ad0fa8ab70f888p@chr19:42145229..42145239, +
3.19e-45FFCP PHASE1:Hg19::chr3:66444556..66444563,-#_35395ca216e7d06790ad0fa8ab70f888p@chr3:66444556..66444563, -
3.19e-45FFCP PHASE1:Hg19::chr19:42145229..42145239,+#_35395ca216e7d06790ad0fa8ab70f888p@chr19:42145229..42145239, +
5.0e-45FFCP PHASE1:Hg19::chr8:1708601..1708607,+#_f988e28d427eb4400c25b9f055c2caf7p@chr8:1708601..1708607, +
5.0e-45FFCP PHASE2:Hg19::chr8:1708601..1708607,+#_f988e28d427eb4400c25b9f055c2caf7p@chr8:1708601..1708607, +
6.26e-45FFCP PHASE2:Hg19::chr10:6337053..6337076,+#_fbc36c3ea98846c2799a664c57927d04p@chr10:6337053..6337076, +
6.26e-45FFCP PHASE1:Hg19::chr10:6337053..6337076,+#_fbc36c3ea98846c2799a664c57927d04p@chr10:6337053..6337076, +
7.83e-45FFCP PHASE2:Hg19::chr2:204736259..204736275,-#_fcf3fc9b92b1c26fd73be179323b8476p@chr2:204736259..204736275, -
7.83e-45FFCP PHASE1:Hg19::chr2:204736259..204736275,-#_fcf3fc9b92b1c26fd73be179323b8476p@chr2:204736259..204736275, -
9.79e-45FFCP PHASE2:Hg19::chr11:128199304..128199313,+#_e41f22aae25efaa48960705f82383f80p@chr11:128199304..128199313, +
9.79e-45FFCP PHASE1:Hg19::chr11:128199304..128199313,+#_e41f22aae25efaa48960705f82383f80p@chr11:128199304..128199313, +
7.33e-41FFCP PHASE1:Hg19::chr6:38905902..38905931,+#_4c5367893cc882458ea107b6bfa0713ap@chr6:38905902..38905931, +
7.33e-41FFCP PHASE2:Hg19::chr6:38905902..38905931,+#_4c5367893cc882458ea107b6bfa0713ap@chr6:38905902..38905931, +
8.98e-41FFCP PHASE1:Hg19::chr13:40765017..40765053,-#_ce5ffd433f363711db77dbecad936f3bp@chr13:40765017..40765053, -
8.98e-41FFCP PHASE2:Hg19::chr13:40765017..40765053,-#_ce5ffd433f363711db77dbecad936f3bp@chr13:40765017..40765053, -
1.1e-40FFCP PHASE2:Hg19::chr21:32568033..32568068,-#_55b4e0c74b690b28a43c136062e987d9p@chr21:32568033..32568068, -
1.1e-40FFCP PHASE1:Hg19::chr21:32568033..32568068,-#_55b4e0c74b690b28a43c136062e987d9p@chr21:32568033..32568068, -
1.34e-40FFCP PHASE2:Hg19::chr7:44663908..44663917,+#_8f70c5da8daf429b03d853ddb589bf41p6@OGDH
1.34e-40FFCP PHASE1:Hg19::chr7:44663908..44663917,+#_8f70c5da8daf429b03d853ddb589bf41p6@OGDH
1.64e-40FFCP PHASE1:Hg19::chr1:118201616..118201641,+#_7be82139d9c4b3d60cd9d775c176aa2ep@chr1:118201616..118201641, +
1.64e-40FFCP PHASE2:Hg19::chr1:118201616..118201641,+#_7be82139d9c4b3d60cd9d775c176aa2ep@chr1:118201616..118201641, +
2.01e-40FFCP PHASE1:Hg19::chr10:63977707..63977724,-#_6456dc37ef506043c26ea34367d0c7e5p@chr10:63977707..63977724, -
2.01e-40FFCP PHASE2:Hg19::chr10:63977707..63977724,-#_6456dc37ef506043c26ea34367d0c7e5p@chr10:63977707..63977724, -
3.01e-40FFCP PHASE1:Hg19::chr1:27853648..27853665,-#_c11e3b88460a5307b00b19e0b2d8b581p@chr1:27853648..27853665, -
3.01e-40FFCP PHASE2:Hg19::chrX:49122952..49122962,-#_c11e3b88460a5307b00b19e0b2d8b581-, p@chrX:49122952..49122962
3.01e-40FFCP PHASE2:Hg19::chr1:27853648..27853665,-#_c11e3b88460a5307b00b19e0b2d8b581p@chr1:27853648..27853665, -
3.01e-40FFCP PHASE1:Hg19::chr10:63996620..63996627,-#_c11e3b88460a5307b00b19e0b2d8b581p@chr10:63996620..63996627, -
3.01e-40FFCP PHASE2:Hg19::chr10:63996620..63996627,-#_c11e3b88460a5307b00b19e0b2d8b581p@chr10:63996620..63996627, -
3.01e-40FFCP PHASE1:Hg19::chrX:49122952..49122962,-#_c11e3b88460a5307b00b19e0b2d8b581p@chrX:49122952..49122962, -
3.68e-40FFCP PHASE2:Hg19::chrY:23411674..23411684,+#_02546325b7beaf6db8579e59a6e6a7c7p@chrY:23411674..23411684, +
3.68e-40FFCP PHASE1:Hg19::chrY:23411674..23411684,+#_02546325b7beaf6db8579e59a6e6a7c7p@chrY:23411674..23411684, +
5.49e-40FFCP PHASE2:Hg19::chrX:49107447..49107461,-#_579c85bcf257c818bbd1898354aefd5dp@chrX:49107447..49107461, -
5.49e-40FFCP PHASE1:Hg19::chrX:49107447..49107461,-#_579c85bcf257c818bbd1898354aefd5dp@chrX:49107447..49107461, -
1.3e-37FFCP PHASE1:Hg19::chrX:118822985..118823001,+#_7ae667f84da005293e46a015791720e2p@chrX:118822985..118823001, +
1.3e-37FFCP PHASE2:Hg19::chrX:118822985..118823001,+#_7ae667f84da005293e46a015791720e2p@chrX:118822985..118823001, +
1.57e-37FFCP PHASE2:Hg19::chr3:47079691..47079696,+#_7f74196e33eab0a49919d5e37dbdbd01p@chr3:47079691..47079696, +
1.57e-37FFCP PHASE1:Hg19::chr3:47079691..47079696,+#_7f74196e33eab0a49919d5e37dbdbd01p@chr3:47079691..47079696, +
1.89e-37FFCP PHASE2:Hg19::chr15:63961074..63961079,+#_9a222dffe8d23196ded6ee5bca7bb674p@chr15:63961074..63961079, +
1.89e-37FFCP PHASE1:Hg19::chr15:63961074..63961079,+#_9a222dffe8d23196ded6ee5bca7bb674p@chr15:63961074..63961079, +
2.27e-37FFCP PHASE2:Hg19::chr19:42145174..42145183,+#_320cb1ae9073e06536b1b288afc4dbc6p@chr19:42145174..42145183, +
2.27e-37FFCP PHASE1:Hg19::chr19:42145174..42145183,+#_320cb1ae9073e06536b1b288afc4dbc6p@chr19:42145174..42145183, +
3.28e-37FFCP PHASE1:Hg19::chr9:133920899..133920914,+#_473ec7f0aa3a52649eb59ac345f263f7p@chr9:133920899..133920914, +
3.28e-37FFCP PHASE2:Hg19::chr3:183067487..183067500,+#_473ec7f0aa3a52649eb59ac345f263f7p@chr3:183067487..183067500, +
3.28e-37FFCP PHASE1:Hg19::chr3:183067487..183067500,+#_473ec7f0aa3a52649eb59ac345f263f7p@chr3:183067487..183067500, +
3.28e-37FFCP PHASE2:Hg19::chr9:133920899..133920914,+#_473ec7f0aa3a52649eb59ac345f263f7p@chr9:133920899..133920914, +
3.94e-37FFCP PHASE2:Hg19::chr4:109086375..109086388,-#_2baa939aa4d3b130335122bf8e5d3eccp43@LEF1
3.94e-37FFCP PHASE1:Hg19::chr11:128392481..128392492,+#_2baa939aa4d3b130335122bf8e5d3ecc+, p@chr11:128392481..128392492
3.94e-37FFCP PHASE2:Hg19::chr11:128392481..128392492,+#_2baa939aa4d3b130335122bf8e5d3eccp@chr11:128392481..128392492, +
3.94e-37FFCP PHASE1:Hg19::chr4:109086375..109086388,-#_2baa939aa4d3b130335122bf8e5d3eccp43@LEF1
4.73e-37FFCP PHASE1:Hg19::chr14:22443271..22443281,+#_0679b47486fd1c20e156d467e245efa7p@chr14:22443271..22443281, +
4.73e-37FFCP PHASE2:Hg19::chr8:29946317..29946322,+#_0679b47486fd1c20e156d467e245efa7p@chr8:29946317..29946322, +
4.73e-37FFCP PHASE2:Hg19::chr14:22443271..22443281,+#_0679b47486fd1c20e156d467e245efa7p@chr14:22443271..22443281, +
4.73e-37FFCP PHASE1:Hg19::chr8:29946317..29946322,+#_0679b47486fd1c20e156d467e245efa7p@chr8:29946317..29946322, +
6.83e-37FFCP PHASE2:Hg19::chr12:12654246..12654268,-#_bbb6061e7d45e104812b7f733a6760d0p@chr12:12654246..12654268, -
6.83e-37FFCP PHASE1:Hg19::chr12:12654246..12654268,-#_bbb6061e7d45e104812b7f733a6760d0p@chr12:12654246..12654268, -
8.2e-37FFCP PHASE1:Hg19::chr16:50372905..50372915,-#_98bdffc8498615e622730c67295d8f77p@chr16:50372905..50372915, -
8.2e-37FFCP PHASE2:Hg19::chr16:50372905..50372915,-#_98bdffc8498615e622730c67295d8f77p@chr16:50372905..50372915, -