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DOID:0060084

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Name:cell type benign neoplasm
Namespace:FANTOM
Definition:"A benign neoplasm that is classified by the type of cell or tissue from which it is derived." [url:http://en.wikipedia.org/wiki/Benign_tumor]
Created by:lschriml
Creation date:2011-07-14T11:59:48Z

Ontology association
Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.

link to ontology dataset
data


Parents

is_a:DOID:0060072(benign neoplasm)



Children


is a:DOID:127 (leiomyoma),DOID:255 (hemangioma),DOID:2615 (papilloma)


Ontology Tree: Loaded from BioPortal

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060084 (cell type benign neoplasm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.41e-147FFCP PHASE1:Hg19::chr3:132975986..132975997,-#_b27cdd33379734f7d2ccae287b408ef5p1@uc003epl.2
5.41e-147FFCP PHASE2:Hg19::chr3:132975986..132975997,-#_b27cdd33379734f7d2ccae287b408ef5p1@uc003epl.2
8.98e-131FFCP PHASE2:Hg19::chr1:152842546..152842554,+#_f7b4a2a363b6b6d43cd143c9de545242p@chr1:152842546..152842554, +
8.98e-131FFCP PHASE1:Hg19::chr1:152842532..152842539,+#_f7b4a2a363b6b6d43cd143c9de545242p@chr1:152842532..152842539, +
8.98e-131FFCP PHASE1:Hg19::chr1:152842546..152842554,+#_f7b4a2a363b6b6d43cd143c9de545242p@chr1:152842546..152842554, +
8.98e-131FFCP PHASE2:Hg19::chr1:152842532..152842539,+#_f7b4a2a363b6b6d43cd143c9de545242p@chr1:152842532..152842539, +
2.33e-118FFCP PHASE2:Hg19::chr3:132976005..132976010,-#_f555932bf39d69a839a6ba1418d480a0p2@ENST00000505721
2.33e-118FFCP PHASE1:Hg19::chr3:132976005..132976010,-#_f555932bf39d69a839a6ba1418d480a0p2@ENST00000505721
3.48e-118FFCP PHASE1:Hg19::chr2:218192886..218192899,-#_70762f448ad82860d79672710b2da202p@chr2:218192886..218192899, -
3.48e-118FFCP PHASE2:Hg19::chr2:218192886..218192899,-#_70762f448ad82860d79672710b2da202p@chr2:218192886..218192899, -
5.41e-85FFCP PHASE1:Hg19::chr8:42037558..42037573,-#_2cf9f6f28a1a218ef35b3083f7255899p@chr8:42037558..42037573, -
5.41e-85FFCP PHASE2:Hg19::chr8:42037558..42037573,-#_2cf9f6f28a1a218ef35b3083f7255899-, p@chr8:42037558..42037573
1.28e-84FFCP PHASE2:Hg19::chr3:141150971..141150978,+#_8cc5c6c300605e25ce1abcb7e4dda252p60@ZBTB38
1.28e-84FFCP PHASE1:Hg19::chr3:141150971..141150978,+#_8cc5c6c300605e25ce1abcb7e4dda252p60@ZBTB38
2.39e-66FFCP PHASE1:Hg19::chr2:218192853..218192858,-#_2a39caa533d592507ab8897ee55a4304p@chr2:218192853..218192858, -
2.39e-66FFCP PHASE2:Hg19::chr2:218192853..218192858,-#_2a39caa533d592507ab8897ee55a4304p@chr2:218192853..218192858, -
4.68e-66FFCP PHASE1:Hg19::chr1:163045452..163045464,+#_dd02dece8a5c34fd1cbd8004eaae70f9p@chr1:163045452..163045464, +
4.68e-66FFCP PHASE2:Hg19::chr1:163045452..163045464,+#_dd02dece8a5c34fd1cbd8004eaae70f9+, p@chr1:163045452..163045464
2.43e-60FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_8d922b1a01f7244629a34014afeb6a22p3@KIAA1644
2.43e-60FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_8d922b1a01f7244629a34014afeb6a22p3@KIAA1644
4.17e-55FFCP PHASE2:Hg19::chr2:207406777..207406786,+#_304bcde8aaeeca946ba68e59bd560f91p9@ADAM23
4.17e-55FFCP PHASE1:Hg19::chr2:207406777..207406786,+#_304bcde8aaeeca946ba68e59bd560f91p9@ADAM23
1.41e-46FFCP PHASE1:Hg19::chr8:42040287..42040298,-#_5f11ec06c50a04660e4d7a653eb7a7ebp10@PLAT
1.41e-46FFCP PHASE2:Hg19::chr8:42040287..42040298,-#_5f11ec06c50a04660e4d7a653eb7a7ebp10@PLAT
9.77e-45FFCP PHASE2:Hg19::chr2:218193183..218193196,-#_43e823fd186ab0135b8e96cf5acfba15p@chr2:218193183..218193196, -
9.77e-45FFCP PHASE2:Hg19::chr7:12134329..12134354,-#_43e823fd186ab0135b8e96cf5acfba15p@chr7:12134329..12134354, -
9.77e-45FFCP PHASE1:Hg19::chr2:218193183..218193196,-#_43e823fd186ab0135b8e96cf5acfba15p@chr2:218193183..218193196, -
9.77e-45FFCP PHASE1:Hg19::chr7:12134329..12134354,-#_43e823fd186ab0135b8e96cf5acfba15p@chr7:12134329..12134354, -
6.94e-44FFCP PHASE2:Hg19::chr6:86200265..86200276,+#_adcd956d86c47f10f238d8331566d297p@chr6:86200265..86200276, +
6.94e-44FFCP PHASE1:Hg19::chr6:86200265..86200276,+#_adcd956d86c47f10f238d8331566d297p@chr6:86200265..86200276, +
1.23e-38FFCP PHASE1:Hg19::chrX:7077952..7077959,+#_44a2c872580c742db9ba058f00b8fe69p18@STS
1.23e-38FFCP PHASE2:Hg19::chrX:7077952..7077959,+#_44a2c872580c742db9ba058f00b8fe69p18@STS
1.85e-36FFCP PHASE1:Hg19::chr6:86204236..86204247,+#_13cf4724976c6dc35fae1ea3199cf9e4p@chr6:86204236..86204247, +
1.85e-36FFCP PHASE2:Hg19::chr6:86204236..86204247,+#_13cf4724976c6dc35fae1ea3199cf9e4p@chr6:86204236..86204247, +
2.98e-36FFCP PHASE1:Hg19::chr1:198203826..198203841,+#_ec5f480cbc6ecc7c326b28ddf4090a35p@chr1:198203826..198203841, +
2.98e-36FFCP PHASE2:Hg19::chr1:198203826..198203841,+#_ec5f480cbc6ecc7c326b28ddf4090a35p@chr1:198203826..198203841, +
4.66e-34FFCP PHASE2:Hg19::chr13:32313685..32313699,+#_9297d4b0db4fc980e806c113e3748d82p2@RXFP2
4.66e-34FFCP PHASE1:Hg19::chr13:32313685..32313699,+#_9297d4b0db4fc980e806c113e3748d82p2@RXFP2
5.96e-34FFCP PHASE2:Hg19::chr6:130763941..130763951,+#_704ceecee2f611217932d8f960451806p@chr6:130763941..130763951, +
5.96e-34FFCP PHASE1:Hg19::chr1:46379338..46379343,+#_704ceecee2f611217932d8f960451806p13@MAST2
5.96e-34FFCP PHASE1:Hg19::chr7:12134356..12134370,-#_704ceecee2f611217932d8f960451806-, p@chr7:12134356..12134370
5.96e-34FFCP PHASE2:Hg19::chr4:187518318..187518321,-#_704ceecee2f611217932d8f960451806p53@FAT1
5.96e-34FFCP PHASE1:Hg19::chr3:132975822..132975848,-#_704ceecee2f611217932d8f960451806p@chr3:132975822..132975848, -
5.96e-34FFCP PHASE2:Hg19::chr11:102712977..102712984,-#_704ceecee2f611217932d8f960451806p@chr11:102712977..102712984, -
5.96e-34FFCP PHASE1:Hg19::chr6:130763941..130763951,+#_704ceecee2f611217932d8f960451806p@chr6:130763941..130763951, +
5.96e-34FFCP PHASE1:Hg19::chr3:132975886..132975894,-#_704ceecee2f611217932d8f960451806p1@ENST00000504993
5.96e-34FFCP PHASE2:Hg19::chr3:132975822..132975848,-#_704ceecee2f611217932d8f960451806p@chr3:132975822..132975848, -
5.96e-34FFCP PHASE1:Hg19::chr11:102712977..102712984,-#_704ceecee2f611217932d8f960451806p@chr11:102712977..102712984, -
5.96e-34FFCP PHASE2:Hg19::chr7:12134356..12134370,-#_704ceecee2f611217932d8f960451806p@chr7:12134356..12134370, -
5.96e-34FFCP PHASE2:Hg19::chr3:132975886..132975894,-#_704ceecee2f611217932d8f960451806p1@ENST00000504993
5.96e-34FFCP PHASE1:Hg19::chr4:187518318..187518321,-#_704ceecee2f611217932d8f960451806p53@FAT1
5.96e-34FFCP PHASE2:Hg19::chr1:46379338..46379343,+#_704ceecee2f611217932d8f960451806p13@MAST2
9.1e-34FFCP PHASE2:Hg19::chr13:32313658..32313668,+#_b77e877bc22477102e0f5ad74ae8c86dp3@RXFP2
9.1e-34FFCP PHASE1:Hg19::chr13:32313658..32313668,+#_b77e877bc22477102e0f5ad74ae8c86dp3@RXFP2
8.26e-33FFCP PHASE1:Hg19::chr21:30000326..30000330,+#_35e26630c95d93cb21305eb3c7fffc37p@chr21:30000326..30000330, +
8.26e-33FFCP PHASE2:Hg19::chr21:30000326..30000330,+#_35e26630c95d93cb21305eb3c7fffc37p@chr21:30000326..30000330, +
2.41e-32FFCP PHASE1:Hg19::chr6:130761678..130761702,+#_e9696078c6239f2c955b23d981c5c587p1@AB385516
2.41e-32FFCP PHASE2:Hg19::chr6:130761678..130761702,+#_e9696078c6239f2c955b23d981c5c587p1@AB385516
1.3e-31FFCP PHASE2:Hg19::chr8:42042654..42042665,-#_0a722e4b7a39d8cd7d49ce335e2d0cf6p9@PLAT
1.3e-31FFCP PHASE1:Hg19::chr8:42042654..42042665,-#_0a722e4b7a39d8cd7d49ce335e2d0cf6p9@PLAT
7.37e-31FFCP PHASE1:Hg19::chr2:220326139..220326158,+#_7f9cf95065d860d668707d0f6ce9edfbp10@SPEG
7.37e-31FFCP PHASE2:Hg19::chr2:220326139..220326158,+#_7f9cf95065d860d668707d0f6ce9edfbp10@SPEG
1.0e-30FFCP PHASE1:Hg19::chr7:27219651..27219660,-#_62693abf5dce9550272f68dbaf71ec18p4@ENST00000470747
1.0e-30FFCP PHASE2:Hg19::chr7:27219651..27219660,-#_62693abf5dce9550272f68dbaf71ec18p4@ENST00000470747
1.71e-30FFCP PHASE1:Hg19::chr8:42033253..42033264,-#_506e064d14768ad0da260a0cd28b39cdp@chr8:42033253..42033264, -
1.71e-30FFCP PHASE2:Hg19::chr8:42033253..42033264,-#_506e064d14768ad0da260a0cd28b39cdp@chr8:42033253..42033264, -
1.98e-30FFCP PHASE1:Hg19::chr3:141151044..141151053,+#_abe0afcef8d2961bc07f1aa50b43b2e0p51@ZBTB38
1.98e-30FFCP PHASE2:Hg19::chr3:141151044..141151053,+#_abe0afcef8d2961bc07f1aa50b43b2e0p51@ZBTB38
3.59e-30FFCP PHASE2:Hg19::chr10:90974443..90974454,-#_a80b2c2fe861ae77cb9f331eaa0794a2p@chr10:90974443..90974454, -
3.59e-30FFCP PHASE1:Hg19::chr10:90974443..90974454,-#_a80b2c2fe861ae77cb9f331eaa0794a2p@chr10:90974443..90974454, -
8.26e-30FFCP PHASE2:Hg19::chr7:84349931..84349955,-#_96c1b91dc0e192fb38bc73f756e2d8b7p@chr7:84349931..84349955, -
8.26e-30FFCP PHASE1:Hg19::chr7:84349931..84349955,-#_96c1b91dc0e192fb38bc73f756e2d8b7p@chr7:84349931..84349955, -
1.8e-29FFCP PHASE1:Hg19::chr9:106854088..106854104,-#_4816a7e38eabc8866e2f55d401878828p@chr9:106854088..106854104, -
1.8e-29FFCP PHASE2:Hg19::chr9:106854088..106854104,-#_4816a7e38eabc8866e2f55d401878828p@chr9:106854088..106854104, -
6.14e-29FFCP PHASE2:Hg19::chr3:98518094..98518105,-#_17967820b1fafeac29977b2c4d505ca4p39@DCBLD2
6.14e-29FFCP PHASE1:Hg19::chr3:98518094..98518105,-#_17967820b1fafeac29977b2c4d505ca4p39@DCBLD2
6.28e-29FFCP PHASE2:Hg19::chr10:90988088..90988122,-#_52e21bace1aa5bb4d2683236be2cd436p@chr10:90988088..90988122, -
6.28e-29FFCP PHASE1:Hg19::chr10:90988088..90988122,-#_52e21bace1aa5bb4d2683236be2cd436p@chr10:90988088..90988122, -
6.84e-28FFCP PHASE1:Hg19::chr1:219615990..219616001,-#_af5cd7e39f8c6aa2f803f19518dc88ddp1@ENST00000420762
6.84e-28FFCP PHASE2:Hg19::chr1:219615990..219616001,-#_af5cd7e39f8c6aa2f803f19518dc88ddp1@ENST00000420762
8.12e-28FFCP PHASE2:Hg19::chr4:6279204..6279216,+#_7f84fc9be9b5cdad16a858043d47d0edp6@WFS1
8.12e-28FFCP PHASE1:Hg19::chr4:6279204..6279216,+#_7f84fc9be9b5cdad16a858043d47d0edp6@WFS1
9.35e-28FFCP PHASE1:Hg19::chr8:42045498..42045512,-#_da9240f2c0f9be7bdb7f8b426d268aa2p6@PLAT
9.35e-28FFCP PHASE2:Hg19::chr8:42045498..42045512,-#_da9240f2c0f9be7bdb7f8b426d268aa2p6@PLAT
1.06e-27FFCP PHASE2:Hg19::chr6:17281802..17281817,+#_6d3c5473e2007b2cf185f005ce313d04p13@RBM24
1.06e-27FFCP PHASE2:Hg19::chr3:151871166..151871172,+#_6d3c5473e2007b2cf185f005ce313d04p@chr3:151871166..151871172, +
1.06e-27FFCP PHASE1:Hg19::chr3:151871166..151871172,+#_6d3c5473e2007b2cf185f005ce313d04p@chr3:151871166..151871172, +
1.06e-27FFCP PHASE1:Hg19::chr6:17281802..17281817,+#_6d3c5473e2007b2cf185f005ce313d04p13@RBM24
1.82e-27FFCP PHASE1:Hg19::chr3:69811826..69811835,+#_13c56b853b6bca00f80033add096f7d4p16@MITF
1.82e-27FFCP PHASE2:Hg19::chr3:69811826..69811835,+#_13c56b853b6bca00f80033add096f7d4p16@MITF
2.72e-27FFCP PHASE1:Hg19::chr7:129962463..129962477,+#_7258a700d3d7d81673c1831c50798954+, p@chr7:129962463..129962477
2.72e-27FFCP PHASE2:Hg19::chr7:129962463..129962477,+#_7258a700d3d7d81673c1831c50798954p@chr7:129962463..129962477, +
2.98e-27FFCP PHASE2:Hg19::chr1:163042618..163042628,+#_dbddb6737272f2a99fa74828a5a4c682p@chr1:163042618..163042628, +
2.98e-27FFCP PHASE1:Hg19::chr1:163042618..163042628,+#_dbddb6737272f2a99fa74828a5a4c682p@chr1:163042618..163042628, +
3.26e-27FFCP PHASE2:Hg19::chr12:75875762..75875778,+#_d98a9755c6da6358a94bf48c83b9ecf4p@chr12:75875762..75875778, +
3.26e-27FFCP PHASE1:Hg19::chr12:75875762..75875778,+#_d98a9755c6da6358a94bf48c83b9ecf4p@chr12:75875762..75875778, +
4.65e-27FFCP PHASE1:Hg19::chr14:76447469..76447487,-#_c7ff828390d0b37751b093746033ecf3p12@TGFB3
4.65e-27FFCP PHASE2:Hg19::chr14:76447469..76447487,-#_c7ff828390d0b37751b093746033ecf3p12@TGFB3
5.31e-27FFCP PHASE2:Hg19::chr10:90975757..90975768,-#_af6984e2a61990d78262374d98a2964cp@chr10:90975757..90975768, -
5.31e-27FFCP PHASE1:Hg19::chr10:90975757..90975768,-#_af6984e2a61990d78262374d98a2964cp@chr10:90975757..90975768, -