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MCL coexpression mm9:186

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:45354443..45354446,+p@chr10:45354443..45354446
+
Mm9::chr10:57237043..57237056,-p@chr10:57237043..57237056
-
Mm9::chr10:69013904..69013929,+p@chr10:69013904..69013929
+
Mm9::chr11:75546539..75546545,+p2@Ywhae
Mm9::chr11:75565449..75565509,+p4@Ywhae
Mm9::chr11:94158277..94158297,-p@chr11:94158277..94158297
-
Mm9::chr12:110798500..110798511,+p@chr12:110798500..110798511
+
Mm9::chr12:113029320..113029385,+p@chr12:113029320..113029385
+
Mm9::chr13:110269010..110269038,+p@chr13:110269010..110269038
+
Mm9::chr13:45872860..45872895,-p@chr13:45872860..45872895
-
Mm9::chr13:45872929..45872954,-p@chr13:45872929..45872954
-
Mm9::chr15:103043667..103043683,-p@chr15:103043667..103043683
-
Mm9::chr15:12066324..12066343,+p@chr15:12066324..12066343
+
Mm9::chr15:90811421..90811433,-p@chr15:90811421..90811433
-
Mm9::chr16:17044632..17044652,+p@chr16:17044632..17044652
+
Mm9::chr16:21650274..21650286,-p@chr16:21650274..21650286
-
Mm9::chr16:94646690..94646714,+p3@Ttc3
Mm9::chr16:94647791..94647804,+p@chr16:94647791..94647804
+
Mm9::chr17:87837859..87837876,-p@chr17:87837859..87837876
-
Mm9::chr18:36447552..36447564,+p@chr18:36447552..36447564
+
Mm9::chr18:36447599..36447612,+p@chr18:36447599..36447612
+
Mm9::chr18:36447720..36447733,+p@chr18:36447720..36447733
+
Mm9::chr18:36450769..36450781,+p@chr18:36450769..36450781
+
Mm9::chr18:36452278..36452282,+p@chr18:36452278..36452282
+
Mm9::chr18:6220867..6220879,-p@chr18:6220867..6220879
-
Mm9::chr19:26845416..26845446,+p@chr19:26845416..26845446
+
Mm9::chr19:57733451..57733459,+p@chr19:57733451..57733459
+
Mm9::chr1:138177122..138177139,-p@chr1:138177122..138177139
-
Mm9::chr1:138177160..138177178,-p@chr1:138177160..138177178
-
Mm9::chr1:34240952..34240957,+p@chr1:34240952..34240957
+
Mm9::chr1:34243714..34243726,+p@chr1:34243714..34243726
+
Mm9::chr1:34254084..34254099,+p@chr1:34254084..34254099
+
Mm9::chr2:102240613..102240626,-p4@Trim44
Mm9::chr2:119531323..119531339,+p@chr2:119531323..119531339
+
Mm9::chr2:121760559..121760578,+p@chr2:121760559..121760578
+
Mm9::chr2:128622653..128622671,+p@chr2:128622653..128622671
+
Mm9::chr2:37502719..37502749,-p4@Strbp
Mm9::chr2:6571993..6572001,-p@chr2:6571993..6572001
-
Mm9::chr2:80421045..80421056,-p6@Nckap1
Mm9::chr3:157199510..157199521,+p@chr3:157199510..157199521
+
Mm9::chr3:69190318..69190324,+p@chr3:69190318..69190324
+
Mm9::chr4:138012723..138012734,+p@chr4:138012723..138012734
+
Mm9::chr4:138012789..138012800,+p@chr4:138012789..138012800
+
Mm9::chr5:124071855..124071859,-p@chr5:124071855..124071859
-
Mm9::chr6:135164336..135164348,+p@chr6:135164336..135164348
+
Mm9::chr8:39422826..39422829,-p@chr8:39422826..39422829
-
Mm9::chr8:70217412..70217415,-p@chr8:70217412..70217415
-
Mm9::chr9:25105387..25105411,+p@chr9:25105387..25105411
+
Mm9::chr9:25105412..25105431,+p@chr9:25105412..25105431
+
Mm9::chr9:25109050..25109063,+p@chr9:25109050..25109063
+
Mm9::chr9:70471498..70471513,-p@chr9:70471498..70471513
-
Mm9::chrX:103051247..103051261,-p@chrX:103051247..103051261
-
Mm9::chrX:103051283..103051306,-p@chrX:103051283..103051306
-
Mm9::chrX:132805898..132805933,+p@chrX:132805898..132805933
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0019858cytosine metabolic process0.0346518380540185
GO:0045175basal protein localization0.0346518380540185
GO:0030950establishment and/or maintenance of actin cytoskeleton polarity0.0346518380540185
GO:0032879regulation of localization0.0346518380540185
GO:0030952establishment and/or maintenance of cytoskeleton polarity0.0346518380540185
GO:0032880regulation of protein localization0.0346518380540185
GO:0000228nuclear chromosome0.0390585294056866
GO:0007509mesoderm migration0.0390585294056866
GO:0008078mesodermal cell migration0.0390585294056866
GO:0007354zygotic determination of anterior/posterior axis, embryo0.0390585294056866
GO:0005123death receptor binding0.0390585294056866
GO:0007638mechanosensory behavior0.0390585294056866
GO:0048570notochord morphogenesis0.0390585294056866
GO:0048617embryonic foregut morphogenesis0.0390585294056866
GO:0010172embryonic body morphogenesis0.0390585294056866
GO:0004386helicase activity0.0390585294056866
GO:0032502developmental process0.0390585294056866
GO:0031575G1/S transition checkpoint0.0390585294056866
GO:0007440foregut morphogenesis0.0390585294056866
GO:0000578embryonic axis specification0.0390585294056866
GO:0008595determination of anterior/posterior axis, embryo0.0390585294056866
GO:0010171body morphogenesis0.0390585294056866
GO:0007351tripartite regional subdivision0.0390585294056866
GO:0005662DNA replication factor A complex0.0390585294056866
GO:0007350blastoderm segmentation0.0390585294056866
GO:0008625induction of apoptosis via death domain receptors0.0390585294056866
GO:0048611embryonic ectodermal gut development0.0390585294056866
GO:0016514SWI/SNF complex0.0390585294056866
GO:0001784phosphotyrosine binding0.0390585294056866
GO:0048613embryonic ectodermal gut morphogenesis0.0390585294056866
GO:0046332SMAD binding0.0390585294056866
GO:0030903notochord development0.0390585294056866
GO:0045176apical protein localization0.0390585294056866
GO:0006206pyrimidine base metabolic process0.0390585294056866
GO:0042074cell migration involved in gastrulation0.0390585294056866
GO:0045309protein phosphorylated amino acid binding0.0390585294056866
GO:0050821protein stabilization0.0390585294056866
GO:0048558embryonic gut morphogenesis0.0390585294056866
GO:0007399nervous system development0.0390585294056866
GO:0048340paraxial mesoderm morphogenesis0.0390585294056866
GO:0043601nuclear replisome0.0390585294056866
GO:0031647regulation of protein stability0.0390585294056866
GO:0018209peptidyl-serine modification0.0390585294056866
GO:0030894replisome0.0390585294056866
GO:0048557embryonic digestive tract morphogenesis0.0390585294056866
GO:0018105peptidyl-serine phosphorylation0.0390585294056866
GO:0008105asymmetric protein localization0.0390585294056866
GO:0007275multicellular organismal development0.0390585294056866
GO:0007439ectodermal gut development0.0398844424464048
GO:0043596nuclear replication fork0.0398844424464048
GO:0043330response to exogenous dsRNA0.0398844424464048
GO:0048567ectodermal gut morphogenesis0.0398844424464048
GO:0048547gut morphogenesis0.0408177928673203
GO:0009948anterior/posterior axis specification0.0408177928673203
GO:0014069postsynaptic density0.0408177928673203
GO:0003727single-stranded RNA binding0.0408177928673203
GO:0032496response to lipopolysaccharide0.0408177928673203
GO:0031663lipopolysaccharide-mediated signaling pathway0.0408177928673203
GO:0007093mitotic cell cycle checkpoint0.0408177928673203
GO:0048546digestive tract morphogenesis0.0408177928673203
GO:0048339paraxial mesoderm development0.0408177928673203
GO:0035050embryonic heart tube development0.0408177928673203
GO:0048566embryonic gut development0.0408177928673203
GO:0043331response to dsRNA0.0408177928673203
GO:0051219phosphoprotein binding0.0408177928673203
GO:0004707MAP kinase activity0.0408177928673203
GO:0006974response to DNA damage stimulus0.0418893485611573
GO:0043232intracellular non-membrane-bound organelle0.0428879313115443
GO:0043228non-membrane-bound organelle0.0428879313115443
GO:0030032lamellipodium biogenesis0.0437567641705426
GO:0009112nucleobase metabolic process0.0437567641705426
GO:0009719response to endogenous stimulus0.045387146081772
GO:0009798axis specification0.0458762410382874
GO:0007492endoderm development0.0458762410382874
GO:0002237response to molecule of bacterial origin0.0458762410382874
GO:0009612response to mechanical stimulus0.0458762410382874
GO:0005622intracellular0.0458762410382874
GO:0048565gut development0.0477566132305145
GO:0048523negative regulation of cellular process0.0491360628749696
GO:0008624induction of apoptosis by extracellular signals0.0491360628749696
GO:0016585chromatin remodeling complex0.0498390520962728
GO:0004860protein kinase inhibitor activity0.0498390520962728
GO:0003697single-stranded DNA binding0.0498390520962728



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest4.05e-1292
tube1.80e-10114
neurectoderm2.55e-1064
neural plate2.55e-1064
presumptive neural plate2.55e-1064
embryo3.70e-10320
regional part of nervous system4.74e-1054
multi-cellular organism6.14e-10333
pre-chordal neural plate2.12e-0949
neural tube6.80e-0952
neural rod6.80e-0952
future spinal cord6.80e-0952
neural keel6.80e-0952
anatomical conduit1.07e-08122
multi-tissue structure1.51e-08230
occipital lobe4.08e-0810
visual cortex4.08e-0810
neocortex4.08e-0810
brain4.37e-0847
future brain4.37e-0847
anterior neural tube5.13e-0840
anatomical cluster7.97e-08244
regional part of brain8.78e-0846
gray matter9.52e-0834
regional part of forebrain1.22e-0739
forebrain1.22e-0739
future forebrain1.22e-0739
ecto-epithelium1.85e-0773
central nervous system2.40e-0773
brain grey matter4.53e-0729
regional part of telencephalon4.53e-0729
telencephalon4.53e-0729


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.81021e-07
MA0004.10.22385
MA0006.10.0155406
MA0007.10.0796019
MA0009.10.591589
MA0014.11.44686e-06
MA0017.10.0694835
MA0019.10.691155
MA0024.10.177895
MA0025.10.371187
MA0027.11.69203
MA0028.10.00294766
MA0029.10.165083
MA0030.10.168911
MA0031.10.889488
MA0038.10.0583373
MA0040.10.212892
MA0041.11.75656
MA0042.10.948695
MA0043.10.269674
MA0046.11.20754
MA0048.10.0220791
MA0050.10.281042
MA0051.10.0614839
MA0052.10.218107
MA0055.10.492283
MA0056.10
MA0057.10.0340411
MA0058.10.109899
MA0059.10.254159
MA0060.10.000488428
MA0061.10.025515
MA0063.10
MA0066.10.774168
MA0067.10.460607
MA0068.10.0378703
MA0069.10.218327
MA0070.11.14552
MA0071.10.279746
MA0072.10.595735
MA0073.10.0560331
MA0074.10.37862
MA0076.10.00500926
MA0077.10.193028
MA0078.10.929178
MA0081.10.298309
MA0083.10.269117
MA0084.10.748608
MA0087.10.239452
MA0088.10.0662034
MA0089.10
MA0090.10.0681363
MA0091.10.242555
MA0092.10.178845
MA0093.10.271217
MA0095.10
MA0098.10
MA0100.10.0400425
MA0101.10.047449
MA0103.10.506077
MA0105.10.000543594
MA0106.10.0769837
MA0107.10.00406591
MA0108.20.114661
MA0109.10
MA0111.10.196615
MA0113.10.505855
MA0114.10.0640815
MA0115.10.271644
MA0116.10.0510887
MA0117.10.695708
MA0119.10.0477192
MA0122.10.262941
MA0124.11.07093
MA0125.10.358609
MA0130.10
MA0131.10.101573
MA0132.10
MA0133.10
MA0135.10.802028
MA0136.10.0494027
MA0139.10.00813464
MA0140.10.156085
MA0141.10.0945839
MA0142.10.434397
MA0143.10.916952
MA0144.10.0668216
MA0145.10.000516404
MA0146.10.0208426
MA0147.10.158516
MA0148.10.24705
MA0149.10.0500219
MA0062.20.0107647
MA0035.20.655394
MA0039.21.64049e-06
MA0138.20.0979225
MA0002.20.0603574
MA0137.20.0920079
MA0104.20.0336124
MA0047.20.211312
MA0112.20.000110603
MA0065.20.0126727
MA0150.10.963185
MA0151.10
MA0152.10.463056
MA0153.10.829464
MA0154.10.000715729
MA0155.10.0407668
MA0156.10.0278399
MA0157.10.782378
MA0158.10
MA0159.10.0888074
MA0160.10.0238852
MA0161.10
MA0162.12.00448e-05
MA0163.10.000947515
MA0164.10.185637
MA0080.20.0238613
MA0018.20.0526357
MA0099.20.650672
MA0079.22.26757e-12
MA0102.20.796982
MA0258.10.0528736
MA0259.10.0264545
MA0442.10
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