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NonredundantMotifs:175

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Representative Motif


Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon
May 2013, Collection Name: Non-redundant known motifs
Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.
207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name  :non-redundant175
  • db  :SWISSREGULON
  • Id  :PAX8.p2
  • name  :PAX8
  • score  :0.11612505426120512
  • External refs:
EntrezGene:7849
UniProt:7849

  • Internal refs:
EntrezGene:7849


Motif matrix
P0ACGT
126.3569581.8431325.77466519.352389
24.34343627.13960514.6201827.223921
339.1648794.9868990.7830748.392292
43.70922717.71542419.69667812.205815
55.10075713.4643410.34220734.419839
610.31486421.390857.76793813.853492
728.9972757.0444275.58070511.704737
88.6345235.0823591.23637138.373891
91.3451514.54667143.7194553.715867
1013.59581530.1234586.9791712.6287
1125.6608780.98005525.6377551.048456
120.5536361.5741211.24937149.950016
130.925279050.0129492.388916
1431.4316392.89863318.5456910.451181
1520.2904254.28404424.3734524.379223
1613.48120410.9114448.09110920.843387
1711.1834512.5340036.08602923.523662
1819.4003314.34206813.8798915.704855

Sub Motif Members