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NonredundantMotifs:178

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Representative Motif


Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon
May 2013, Collection Name: Non-redundant known motifs
Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.
207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name  :non-redundant178
  • db  :HOCOMOCO
  • Id  :PAX8_f1
  • name  :
  • score  :0.14282671296680755
  • External refs:
EntrezGene:7849
UniProt:7849

  • Internal refs:
EntrezGene:7849


Motif matrix
P0ACGT
14.29239401496260257.827306733167114.67269326683291710.127805486284279
23.02992518703242158.248129675810483.53491271820448922.107231920199496
39.08977556109727714.027431421446411.7830423940149772.0199501246882803
430.7481296758104962.58104738154613372.01995012468828031.5710723192019957
55.04987531172070916.6084788029925080.015.261845386533679
62.5249376558603515.891521197007471.571072319201995726.93266832917707
73.142144638403991516.1596009975062316.6084788029925081.009975062344142
817.1695760598503752.132169576059849414.4763092269326763.1421446384039915
915.82294264339150712.1197007481296674.9376558603491224.039900249376568
101.0099750623441428.30423940149627325.0810473815461632.524937655860351
115.27431421446384719.5261845386533820.012.119700748129667
1214.3640897755610874.03990024937656818.5162094763092460.0
130.03.59102244389027616.83291770573564616.49625935162096
1412.7088528678304262.048004987531173416.075436408977586.087905236907748

Sub Motif Members