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UBERON:0000059

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Name:large intestine
Namespace:FANTOM
Definition:"The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal.[FMA]." [FMA:7201, Wikipedia:Large_intestine_(anatomy)]
Xrefs:
links:

AAO:0010396
BTO:0000706
EFO:0000840
EMAPA:19252
EV:0100077
FMA:7201
GAID:306
galen:LargeIntestine
MA:0000333
MESH:A.03.492.411.495
MIAA:0000046
ncithesaurus:Large_Intestine
OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA
SCTID:181254001
VHOG:0000054

XAO:0000131
Synonyms: "intestinum crassum" RELATED [BTO:0000706]
Subset: major_organ
organ_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004921(subdivision of digestive tract),UBERON:0013765(digestive system element)
part_of:UBERON:0000160(intestine),UBERON:0004907(lower digestive tract)



Children

part of:UBERON:0001052 (rectum),UBERON:0001153 (caecum),UBERON:0001155 (colon),CL:0002253 (epithelial cell of large intestine),CL:1000279 (smooth muscle cell of large intestine)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000059 (large intestine), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.93e-89FFCP PHASE1:Hg19::chr2:200333534..200333558,+#_e0ef8db3b47b2660f8257949871a786ap1@ENST00000446911
1.93e-89FFCP PHASE2:Hg19::chr11:114430570..114430581,-#_e0ef8db3b47b2660f8257949871a786ap2@FAM55A
1.93e-89FFCP PHASE2:Hg19::chr2:200333534..200333558,+#_e0ef8db3b47b2660f8257949871a786ap1@ENST00000446911
1.93e-89FFCP PHASE1:Hg19::chr7:100612647..100612650,+#_e0ef8db3b47b2660f8257949871a786ap8@MUC12
1.93e-89FFCP PHASE1:Hg19::chr11:114430570..114430581,-#_e0ef8db3b47b2660f8257949871a786ap2@FAM55A
1.93e-89FFCP PHASE2:Hg19::chr7:100612647..100612650,+#_e0ef8db3b47b2660f8257949871a786ap8@MUC12
8.79e-75FFCP PHASE1:Hg19::chr11:114522262..114522267,-#_3670c2107c69b4d3d2a5f3a07bbb5295p@chr11:114522262..114522267, -
8.79e-75FFCP PHASE2:Hg19::chr11:114522262..114522267,-#_3670c2107c69b4d3d2a5f3a07bbb5295p@chr11:114522262..114522267, -
6.65e-72FFCP PHASE1:Hg19::chr2:200329672..200329678,-#_511c77587a2abce51e705b8314cbb49ap50@SATB2
6.65e-72FFCP PHASE2:Hg19::chr2:200329672..200329678,-#_511c77587a2abce51e705b8314cbb49ap50@SATB2
6.65e-72FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_511c77587a2abce51e705b8314cbb49ap@chr4:150822397..150822409, -
6.65e-72FFCP PHASE1:Hg19::chr13:28541477..28541493,-#_511c77587a2abce51e705b8314cbb49ap6@CDX2
6.65e-72FFCP PHASE2:Hg19::chr13:28541477..28541493,-#_511c77587a2abce51e705b8314cbb49ap6@CDX2
6.65e-72FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_511c77587a2abce51e705b8314cbb49ap1@MS4A12
6.65e-72FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_511c77587a2abce51e705b8314cbb49ap@chr4:150822397..150822409, -
6.65e-72FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_511c77587a2abce51e705b8314cbb49ap1@MS4A12
1.86e-64FFCP PHASE1:Hg19::chr17:46716676..46716698,-#_43b199a6a22e1331af5c5099858644eep1@ENST00000438772
1.86e-64FFCP PHASE2:Hg19::chr17:46716676..46716698,-#_43b199a6a22e1331af5c5099858644eep1@ENST00000438772
2.63e-64FFCP PHASE2:Hg19::chr7:100612686..100612700,+#_bc1a2dd7a3b0d2cfb6c921135e51c525p3@MUC12
2.63e-64FFCP PHASE2:Hg19::chr8:86253920..86253944,-#_bc1a2dd7a3b0d2cfb6c921135e51c525p2@CA1
2.63e-64FFCP PHASE1:Hg19::chr8:86253920..86253944,-#_bc1a2dd7a3b0d2cfb6c921135e51c525p2@CA1
2.63e-64FFCP PHASE1:Hg19::chr7:100612686..100612700,+#_bc1a2dd7a3b0d2cfb6c921135e51c525p3@MUC12
2.99e-64FFCP PHASE1:Hg19::chr7:100612141..100612155,-#_32f6c19460e332dbaea7170ab9fd4113p@chr7:100612141..100612155, -
2.99e-64FFCP PHASE2:Hg19::chr7:100612141..100612155,-#_32f6c19460e332dbaea7170ab9fd4113p@chr7:100612141..100612155, -
3.21e-64FFCP PHASE2:Hg19::chr1:167059763..167059776,-#_99bb6111c6791aac4c4d66cf739c9702p4@GPA33
3.21e-64FFCP PHASE1:Hg19::chr1:167059763..167059776,-#_99bb6111c6791aac4c4d66cf739c9702p4@GPA33
5.05e-64FFCP PHASE1:Hg19::chr3:108476254..108476257,-#_c565b2292ee777ffeba85066897724bdp1@RETNLB
5.05e-64FFCP PHASE2:Hg19::chr3:108476254..108476257,-#_c565b2292ee777ffeba85066897724bdp1@RETNLB
6.55e-64FFCP PHASE1:Hg19::chr6:168479694..168479708,-#_6d83b0f1dc766fa745bee8e3e8935610p3@FRMD1
6.55e-64FFCP PHASE2:Hg19::chr6:168479694..168479708,-#_6d83b0f1dc766fa745bee8e3e8935610p3@FRMD1
1.57e-58FFCP PHASE2:Hg19::chr2:128293323..128293332,+#_da172fc7c4db0b1d9e674e8265a32773p4@MYO7B
1.57e-58FFCP PHASE1:Hg19::chr2:128293323..128293332,+#_da172fc7c4db0b1d9e674e8265a32773p4@MYO7B
2.84e-58FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_a75cc0a665ad9e923f9e1caf10018561p8@CDX2
2.84e-58FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_a75cc0a665ad9e923f9e1caf10018561p8@CDX2
2.85e-58FFCP PHASE1:Hg19::chr4:120243266..120243277,-#_cdb8ba220f7d430e3fb432f066212684p2@FABP2
2.85e-58FFCP PHASE2:Hg19::chr4:120243266..120243277,-#_cdb8ba220f7d430e3fb432f066212684p2@FABP2
8.62e-58FFCP PHASE1:Hg19::chr16:67463701..67463709,+#_812689294b7ac7d20635fa8addd28fc3p@chr16:67463701..67463709, +
8.62e-58FFCP PHASE2:Hg19::chr16:67463701..67463709,+#_812689294b7ac7d20635fa8addd28fc3p@chr16:67463701..67463709, +
1.15e-57FFCP PHASE1:Hg19::chr6:168479679..168479688,-#_61b98514ad7b8f13b8a129f62bda7346p6@FRMD1
1.15e-57FFCP PHASE1:Hg19::chr16:25228264..25228273,+#_61b98514ad7b8f13b8a129f62bda7346p1@AQP8
1.15e-57FFCP PHASE2:Hg19::chr6:168479679..168479688,-#_61b98514ad7b8f13b8a129f62bda7346p6@FRMD1
1.15e-57FFCP PHASE2:Hg19::chr16:25228264..25228273,+#_61b98514ad7b8f13b8a129f62bda7346p1@AQP8
1.34e-57FFCP PHASE1:Hg19::chr17:26800296..26800314,+#_ff85cf102c3eb2fc36f71f07591492e3p4@SLC13A2
1.34e-57FFCP PHASE2:Hg19::chr17:26800296..26800314,+#_ff85cf102c3eb2fc36f71f07591492e3p4@SLC13A2
1.55e-57FFCP PHASE2:Hg19::chr21:44151910..44151921,+#_20958fcbf10dc446e0803b6d9e4e1a18p7@PDE9A
1.55e-57FFCP PHASE1:Hg19::chr21:44151910..44151921,+#_20958fcbf10dc446e0803b6d9e4e1a18p7@PDE9A
1.91e-56FFCP PHASE1:Hg19::chr11:114430588..114430608,-#_bd0492cd43650158a7649ea692322024p1@FAM55A
1.91e-56FFCP PHASE2:Hg19::chr11:114430588..114430608,-#_bd0492cd43650158a7649ea692322024p1@FAM55A
3.01e-56FFCP PHASE2:Hg19::chr11:114466397..114466426,-#_f405bffb2bfc660b984437dd1624883dp2@FAM55D
3.01e-56FFCP PHASE1:Hg19::chr11:114466397..114466426,-#_f405bffb2bfc660b984437dd1624883dp2@FAM55D
2.16e-54FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_8e5549b936d12f2e3b03ca6f7e68b51dp@chr1:38201159..38201166, -
2.16e-54FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_8e5549b936d12f2e3b03ca6f7e68b51dp@chr15:45950466..45950474, +
2.16e-54FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_8e5549b936d12f2e3b03ca6f7e68b51dp@chr15:45950466..45950474, +
2.16e-54FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_8e5549b936d12f2e3b03ca6f7e68b51dp@chr1:38201159..38201166, -
5.44e-54FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_cb56c1337ac6bb8b233b1542337a0746p2@NKX2-3
5.44e-54FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_cb56c1337ac6bb8b233b1542337a0746p2@NKX2-3
5.49e-54FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_1c5eda44027de98243c059e1b47cd68fp9@P2RY14
5.49e-54FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_1c5eda44027de98243c059e1b47cd68fp9@P2RY14
2.22e-52FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_6629338f726055b67e9e64916110036dp3@CDX2
2.22e-52FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_6629338f726055b67e9e64916110036dp3@CDX2
2.2e-51FFCP PHASE2:Hg19::chr11:69294647..69294668,-#_45d0e189f9ef8c13183d343e914ec829p1@ENST00000542064
2.2e-51FFCP PHASE1:Hg19::chr11:69294647..69294668,-#_45d0e189f9ef8c13183d343e914ec829p1@ENST00000542064
1.86e-50FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_1fa0087b957c937c2f317dd5e6166e7bp5@CDX2
1.86e-50FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_1fa0087b957c937c2f317dd5e6166e7bp5@CDX2
4.97e-50FFCP PHASE2:Hg19::chrX:100129340..100129353,-#_8e7670dc839cadb743850e3e6b2533dep2@NOX1
4.97e-50FFCP PHASE1:Hg19::chrX:100129340..100129353,-#_8e7670dc839cadb743850e3e6b2533dep2@NOX1
6.89e-50FFCP PHASE2:Hg19::chr4:2038275..2038288,+#_930f1e9d3c3db1d6789ee1504bc8f2b8p@chr4:2038275..2038288, +
6.89e-50FFCP PHASE1:Hg19::chr4:2038275..2038288,+#_930f1e9d3c3db1d6789ee1504bc8f2b8p@chr4:2038275..2038288, +
8.44e-50FFCP PHASE1:Hg19::chr9:22113541..22113546,+#_cf09598e0e2a006fc04b1a490d92e677p3@CDKN2B-AS
8.44e-50FFCP PHASE2:Hg19::chr9:22113541..22113546,+#_cf09598e0e2a006fc04b1a490d92e677p3@CDKN2B-AS
1.62e-49FFCP PHASE1:Hg19::chrX:65382664..65382675,+#_b69a79cae28dcd95c08fbd4b54247173p8@HEPH
1.62e-49FFCP PHASE2:Hg19::chrX:65382664..65382675,+#_b69a79cae28dcd95c08fbd4b54247173p8@HEPH
1.89e-49FFCP PHASE1:Hg19::chr5:180415839..180415851,+#_3996e958ba65cac9b1232007771870c5p2@BTNL3
1.89e-49FFCP PHASE2:Hg19::chr5:180415839..180415851,+#_3996e958ba65cac9b1232007771870c5p2@BTNL3
5.62e-49FFCP PHASE1:Hg19::chr17:48844868..48844891,-#_cc548a3f7f66a16b28d7ecfa8dce2079p1@LINC00483
5.62e-49FFCP PHASE2:Hg19::chr17:48844868..48844891,-#_cc548a3f7f66a16b28d7ecfa8dce2079p1@LINC00483
2.86e-48FFCP PHASE1:Hg19::chr16:29748234..29748245,-#_7f675bac2b7f8085923e8a2d5b50f838p@chr16:29748234..29748245, -
2.86e-48FFCP PHASE2:Hg19::chr16:29748234..29748245,-#_7f675bac2b7f8085923e8a2d5b50f838p@chr16:29748234..29748245, -
3.24e-48FFCP PHASE1:Hg19::chr1:155912696..155912738,-#_f03cc79dfac07a3deb9d30c1fb52aceep@chr1:155912696..155912738, -
3.24e-48FFCP PHASE2:Hg19::chr1:155912696..155912738,-#_f03cc79dfac07a3deb9d30c1fb52aceep@chr1:155912696..155912738, -
4.13e-48FFCP PHASE2:Hg19::chr21:44151895..44151908,+#_e3eb46edc452ffef4c5bc335e2a00143p6@PDE9A
4.13e-48FFCP PHASE1:Hg19::chr21:44151895..44151908,+#_e3eb46edc452ffef4c5bc335e2a00143p6@PDE9A
1.96e-46FFCP PHASE2:Hg19::chrX:100129320..100129329,-#_7997139ce6a72f547da8d4bcf2111f71p3@NOX1
1.96e-46FFCP PHASE1:Hg19::chrX:100129320..100129329,-#_7997139ce6a72f547da8d4bcf2111f71p3@NOX1
2.21e-46FFCP PHASE1:Hg19::chr17:48844903..48844922,-#_6916b8f71c54b0f5acb248b81edcfe96p2@LINC00483
2.21e-46FFCP PHASE2:Hg19::chr17:48844903..48844922,-#_6916b8f71c54b0f5acb248b81edcfe96p2@LINC00483
5.02e-46FFCP PHASE2:Hg19::chrX:65382622..65382653,+#_c91aa4f363792d97efb24cd634dfd17fp3@HEPH
5.02e-46FFCP PHASE1:Hg19::chrX:65382622..65382653,+#_c91aa4f363792d97efb24cd634dfd17fp3@HEPH
1.1e-45FFCP PHASE2:Hg19::chr5:180326145..180326166,+#_c56c14549834a7dc5366752db2b2a17fp1@BTNL8
1.1e-45FFCP PHASE1:Hg19::chr5:180326145..180326166,+#_c56c14549834a7dc5366752db2b2a17fp1@BTNL8
3.4e-45FFCP PHASE1:Hg19::chr16:1275258..1275289,-#_86ae148ecfd184676642d48b54dad909p1@TPSG1
3.4e-45FFCP PHASE2:Hg19::chr16:1275258..1275289,-#_86ae148ecfd184676642d48b54dad909p1@TPSG1
4.08e-45FFCP PHASE1:Hg19::chr16:29789573..29789606,+#_5edce08c64283c258b5cba1d29102edap1@ZG16
4.08e-45FFCP PHASE2:Hg19::chr16:29789573..29789606,+#_5edce08c64283c258b5cba1d29102edap1@ZG16
4.9e-45FFCP PHASE1:Hg19::chr14:103389369..103389380,+#_5a2d5035d727311175446b18c1e9157dp3@AMN
4.9e-45FFCP PHASE2:Hg19::chr14:103389369..103389380,+#_5a2d5035d727311175446b18c1e9157dp3@AMN
6.44e-45FFCP PHASE1:Hg19::chr1:167059674..167059697,-#_6b443a13db39eae3c402101bb81fe564p3@GPA33
6.44e-45FFCP PHASE2:Hg19::chr1:167059674..167059697,-#_6b443a13db39eae3c402101bb81fe564p3@GPA33
4.52e-44FFCP PHASE1:Mm9::chr4:82849680..82849681,-#_14e5eda10e047381b44f84a8e287bce7p@chr4:82849680..82849681, -
4.52e-44FFCP PHASE2:Mm9::chr14:93595014..93595015,-#_14e5eda10e047381b44f84a8e287bce7p@chr14:93595014..93595015, -