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UBERON:0000160

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Name:intestine
Namespace:FANTOM
Definition:"Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine]
Xrefs:
links:

AAO:0000246
ANISEED:1235303
BTO:0000648
EFO:0000834
EV:0100071
FMA:7199
GAID:295
galen:Intestine
MA:0000328
MA:0001524
MESH:A.03.492.411
MIAA:0000043
ncithesaurus:Intestine
SCTID:256876008
TAO:0001338
VHOG:0000056
WBbt:0005772
XAO:0000129

ZFA:0001338
Synonyms: "bowel" EXACT []
Comments:MA also has a class MA:0001524 bowel, not clear how this is different
Alt_id: UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004921(subdivision of digestive tract)
part_of:UBERON:0005409(gastrointestinal system)



Children

derives from:FF:0011265 (mouse intestine- neonate N00 sample),FF:0011285 (mouse intestine- adult sample),FF:0011330 (mouse intestine- embryo E13 sample),FF:0011362 (mouse intestine- embryo E16 sample),FF:0011370 (mouse intestine- embryo E17 sample),FF:0011404 (mouse intestine- neonate N06 sample),FF:0011411 (mouse intestine- neonate N07 sample),FF:0011418 (mouse intestine- neonate N10 sample),FF:0011431 (mouse intestine- neonate N20 sample),FF:0011441 (mouse intestine- embryo E15 sample),FF:0011480 (mouse intestine- neonate N25 sample),FF:0011481 (mouse intestine- neonate N30 sample),FF:0011504 (mouse intestine- neonate N01 sample),FF:0011511 (mouse intestine- embryo E18 sample),FF:0100003 (intestinal cell line sample)
part of:UBERON:0000059 (large intestine),UBERON:0001242 (intestinal mucosa),UBERON:0001262 (wall of intestine),UBERON:0001277 (intestinal epithelium),UBERON:0002108 (small intestine),CL:0002504 (enteric smooth muscle cell),CL:0002563 (intestinal epithelial cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000160 (intestine), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.48e-88FFCP PHASE1:Hg19::chr16:1275258..1275289,-#_ed23b68898094d50ad0295e1bb4160e6p1@TPSG1
3.48e-88FFCP PHASE2:Hg19::chr16:1275258..1275289,-#_ed23b68898094d50ad0295e1bb4160e6p1@TPSG1
7.07e-88FFCP PHASE1:Hg19::chr1:167059763..167059776,-#_88d7b9b7852ace5d1093fac910282463p4@GPA33
7.07e-88FFCP PHASE2:Hg19::chr1:167059763..167059776,-#_88d7b9b7852ace5d1093fac910282463p4@GPA33
1.38e-83FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_7284ab5835be9adbae3d7261a432754ep3@CDX2
1.38e-83FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_7284ab5835be9adbae3d7261a432754ep3@CDX2
1.7e-83FFCP PHASE2:Hg19::chrX:65382664..65382675,+#_f856dcd645d727d201618584c240717dp8@HEPH
1.7e-83FFCP PHASE1:Hg19::chrX:65382664..65382675,+#_f856dcd645d727d201618584c240717dp8@HEPH
1.39e-81FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_4708d7c22bf21f3484cd8cc93e97c42fp2@NKX2-3
1.39e-81FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_4708d7c22bf21f3484cd8cc93e97c42fp2@NKX2-3
4.08e-80FFCP PHASE2:Hg19::chr4:120243266..120243277,-#_f95d034e942aa4396c4604038e205dcep2@FABP2
4.08e-80FFCP PHASE1:Hg19::chr4:120243266..120243277,-#_f95d034e942aa4396c4604038e205dcep2@FABP2
4.9e-80FFCP PHASE2:Hg19::chr14:47203595..47203635,-#_079c1e37a8b152c9d7c160535bdd83fep@chr14:47203595..47203635, -
4.9e-80FFCP PHASE1:Hg19::chr14:47203595..47203635,-#_079c1e37a8b152c9d7c160535bdd83fe-, p@chr14:47203595..47203635
4.9e-80FFCP PHASE1:Hg19::chr2:128293323..128293332,+#_079c1e37a8b152c9d7c160535bdd83fep4@MYO7B
4.9e-80FFCP PHASE2:Hg19::chr2:128293323..128293332,+#_079c1e37a8b152c9d7c160535bdd83fep4@MYO7B
1.23e-77FFCP PHASE2:Hg19::chrX:65382622..65382653,+#_89b7c266457fe788a59c52a0dfd573b4p3@HEPH
1.23e-77FFCP PHASE1:Hg19::chrX:65382622..65382653,+#_89b7c266457fe788a59c52a0dfd573b4p3@HEPH
1.84e-77FFCP PHASE1:Hg19::chr5:180326145..180326166,+#_c23dc9d2bfb318429d1cdb1ce17c8210p1@BTNL8
1.84e-77FFCP PHASE2:Hg19::chr5:180326145..180326166,+#_c23dc9d2bfb318429d1cdb1ce17c8210p1@BTNL8
2.7e-77FFCP PHASE2:Hg19::chr5:180415839..180415851,+#_c959ae783476e82b91a798e8d4ec2245p2@BTNL3
2.7e-77FFCP PHASE1:Hg19::chr5:180415839..180415851,+#_c959ae783476e82b91a798e8d4ec2245p2@BTNL3
4.81e-77FFCP PHASE1:Hg19::chr11:69294647..69294668,-#_06f7a2421c79b20a251164ad3f6d2bf7p1@ENST00000542064
4.81e-77FFCP PHASE2:Hg19::chr11:69294647..69294668,-#_06f7a2421c79b20a251164ad3f6d2bf7p1@ENST00000542064
2.02e-76FFCP PHASE1:Hg19::chr10:101292921..101292931,+#_ac8dee1d4edbab6e5e68d76a725c7dddp4@NKX2-3
2.02e-76FFCP PHASE1:Hg19::chr1:45253840..45253843,-#_ac8dee1d4edbab6e5e68d76a725c7dddp1@BEST4
2.02e-76FFCP PHASE2:Hg19::chr1:45253840..45253843,-#_ac8dee1d4edbab6e5e68d76a725c7dddp1@BEST4
2.02e-76FFCP PHASE2:Hg19::chr10:101292921..101292931,+#_ac8dee1d4edbab6e5e68d76a725c7dddp4@NKX2-3
2.28e-73FFCP PHASE1:Hg19::chr17:48844868..48844891,-#_5eeee8e1b0e3617479ccee715f99429bp1@LINC00483
2.28e-73FFCP PHASE2:Hg19::chr17:48844868..48844891,-#_5eeee8e1b0e3617479ccee715f99429bp1@LINC00483
1.6e-72FFCP PHASE1:Hg19::chr7:107443661..107443675,-#_80bcd3c9414c69be9c24a5cc5ef63d5fp1@SLC26A3
1.6e-72FFCP PHASE2:Hg19::chr7:107443661..107443675,-#_80bcd3c9414c69be9c24a5cc5ef63d5fp1@SLC26A3
2.17e-72FFCP PHASE1:Hg19::chr5:180326100..180326136,+#_ca3637fa11e25914781f7b93cd6437d5p2@BTNL8
2.17e-72FFCP PHASE2:Hg19::chr5:180326100..180326136,+#_ca3637fa11e25914781f7b93cd6437d5p2@BTNL8
2.33e-72FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_b13549a9d971edeebb6f63d86636cf23p8@CDX2
2.33e-72FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_b13549a9d971edeebb6f63d86636cf23p8@CDX2
1.05e-69FFCP PHASE1:Hg19::chr14:103389369..103389380,+#_27c4f7551f5f79be9fec1bbe03d041bcp3@AMN
1.05e-69FFCP PHASE2:Hg19::chr14:103389369..103389380,+#_27c4f7551f5f79be9fec1bbe03d041bcp3@AMN
1.15e-69FFCP PHASE1:Hg19::chr1:167059674..167059697,-#_ba097fa83511e4ec1a0299bc57713a91p3@GPA33
1.15e-69FFCP PHASE2:Hg19::chr1:167059674..167059697,-#_ba097fa83511e4ec1a0299bc57713a91p3@GPA33
1.87e-69FFCP PHASE2:Hg19::chr17:48844903..48844922,-#_4826c4a5a2174c2b4cbba04fc4f920b0p2@LINC00483
1.87e-69FFCP PHASE1:Hg19::chr17:48844903..48844922,-#_4826c4a5a2174c2b4cbba04fc4f920b0p2@LINC00483
3.96e-69FFCP PHASE1:Mm9::chr8:77396650..77396662,+#_955879a7b34ed27ba93f91a8ee32b7fap4@Isx
3.96e-69FFCP PHASE2:Mm9::chr8:77396650..77396662,+#_955879a7b34ed27ba93f91a8ee32b7fap4@Isx
1.08e-68FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_c5e157a3441db6eb3fa701a0e6e27f4ap5@CDX2
1.08e-68FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_c5e157a3441db6eb3fa701a0e6e27f4ap5@CDX2
5.52e-68FFCP PHASE1:Hg19::chr19:50691437..50691453,+#_afa29972f85ce579cd94816f56633e3ep2@MYH14
5.52e-68FFCP PHASE2:Hg19::chr19:50691437..50691453,+#_afa29972f85ce579cd94816f56633e3ep2@MYH14
5.62e-67FFCP PHASE1:Hg19::chr13:28552822..28552831,-#_09cdea1a08e2ac04cda6dbb6d71f7c44p@chr13:28552822..28552831, -
5.62e-67FFCP PHASE2:Hg19::chr13:28552822..28552831,-#_09cdea1a08e2ac04cda6dbb6d71f7c44p@chr13:28552822..28552831, -
6.02e-67FFCP PHASE2:Mm9::chr5:148118809..148118832,-#_1d0f0a4c67b5d62cf45c554595fbbacap5@Cdx2
6.02e-67FFCP PHASE1:Mm9::chr5:148118809..148118832,-#_1d0f0a4c67b5d62cf45c554595fbbacap5@Cdx2
6.2e-67FFCP PHASE2:Hg19::chr15:40648275..40648301,+#_5a02a09fc14f59436faedd6c644bdfbbp@chr15:40648275..40648301, +
6.2e-67FFCP PHASE2:Hg19::chr4:57138437..57138479,+#_5a02a09fc14f59436faedd6c644bdfbbp1@KIAA1211
6.2e-67FFCP PHASE1:Hg19::chr4:57138437..57138479,+#_5a02a09fc14f59436faedd6c644bdfbbp1@KIAA1211
6.2e-67FFCP PHASE1:Hg19::chr11:114430588..114430608,-#_5a02a09fc14f59436faedd6c644bdfbbp1@FAM55A
6.2e-67FFCP PHASE1:Hg19::chr15:40648275..40648301,+#_5a02a09fc14f59436faedd6c644bdfbbp@chr15:40648275..40648301, +
6.2e-67FFCP PHASE2:Hg19::chr11:114430588..114430608,-#_5a02a09fc14f59436faedd6c644bdfbbp1@FAM55A
6.84e-67FFCP PHASE2:Hg19::chr1:167059705..167059714,-#_225e97828c4fefae28ffdd0f794748d2p6@GPA33
6.84e-67FFCP PHASE2:Hg19::chr13:28552867..28552874,-#_225e97828c4fefae28ffdd0f794748d2p@chr13:28552867..28552874, -
6.84e-67FFCP PHASE1:Hg19::chr13:28552867..28552874,-#_225e97828c4fefae28ffdd0f794748d2p@chr13:28552867..28552874, -
6.84e-67FFCP PHASE1:Hg19::chr1:167059705..167059714,-#_225e97828c4fefae28ffdd0f794748d2p6@GPA33
1.01e-66FFCP PHASE2:Hg19::chr3:124646645..124646669,-#_48c8aee46a817a315e8457019fcc3be4p3@MUC13
1.01e-66FFCP PHASE1:Hg19::chr3:124646645..124646669,-#_48c8aee46a817a315e8457019fcc3be4p3@MUC13
9.77e-66FFCP PHASE1:Hg19::chr11:1092389..1092394,+#_d7cf6ca708aedd21b382276558198c8ap14@MUC2
9.77e-66FFCP PHASE1:Hg19::chr11:46958029..46958041,+#_d7cf6ca708aedd21b382276558198c8ap4@C11orf49
9.77e-66FFCP PHASE1:Hg19::chr15:45689453..45689466,-#_d7cf6ca708aedd21b382276558198c8ap11@GATM
9.77e-66FFCP PHASE1:Hg19::chr1:155912696..155912738,-#_d7cf6ca708aedd21b382276558198c8ap@chr1:155912696..155912738, -
9.77e-66FFCP PHASE1:Hg19::chr21:44151895..44151908,+#_d7cf6ca708aedd21b382276558198c8ap6@PDE9A
9.77e-66FFCP PHASE2:Hg19::chr1:155912696..155912738,-#_d7cf6ca708aedd21b382276558198c8ap@chr1:155912696..155912738, -
9.77e-66FFCP PHASE2:Hg19::chr21:44151895..44151908,+#_d7cf6ca708aedd21b382276558198c8ap6@PDE9A
9.77e-66FFCP PHASE2:Hg19::chr11:1092389..1092394,+#_d7cf6ca708aedd21b382276558198c8ap14@MUC2
9.77e-66FFCP PHASE2:Hg19::chr11:46958029..46958041,+#_d7cf6ca708aedd21b382276558198c8ap4@C11orf49
9.77e-66FFCP PHASE2:Hg19::chr15:45689453..45689466,-#_d7cf6ca708aedd21b382276558198c8ap11@GATM
4.15e-65FFCP PHASE1:Mm9::chr7:114809099..114809120,+#_c6314fd8ca83f6c2368af742db163c6ap@chr7:114809099..114809120, +
4.15e-65FFCP PHASE2:Mm9::chr7:114809099..114809120,+#_c6314fd8ca83f6c2368af742db163c6ap@chr7:114809099..114809120, +
1.47e-63FFCP PHASE1:Hg19::chr13:28552795..28552806,-#_64ad17a554db9ca0a7481fb122631ba2p@chr13:28552795..28552806, -
1.47e-63FFCP PHASE2:Hg19::chr13:28552795..28552806,-#_64ad17a554db9ca0a7481fb122631ba2p@chr13:28552795..28552806, -
1.87e-63FFCP PHASE2:Hg19::chr16:23766308..23766323,+#_2fe019901cbe7a205bfdec33a519b012p2@CHP2
1.87e-63FFCP PHASE2:Hg19::chr1:167059607..167059633,-#_2fe019901cbe7a205bfdec33a519b012p1@GPA33
1.87e-63FFCP PHASE1:Hg19::chr16:23766308..23766323,+#_2fe019901cbe7a205bfdec33a519b012p2@CHP2
1.87e-63FFCP PHASE1:Hg19::chr1:167059607..167059633,-#_2fe019901cbe7a205bfdec33a519b012p1@GPA33
2.21e-63FFCP PHASE1:Mm9::chr7:35814319..35814327,-#_b877734bb74b41e2638f415963725181p@chr7:35814319..35814327, -
2.21e-63FFCP PHASE2:Mm9::chr7:35814319..35814327,-#_b877734bb74b41e2638f415963725181p@chr7:35814319..35814327, -
4.58e-63FFCP PHASE2:Hg19::chr8:48911486..48911495,-#_799d60ceaf61fc8be6ec33ad8bf6ccf8p@chr8:48911486..48911495, -
4.58e-63FFCP PHASE1:Hg19::chr8:48911486..48911495,-#_799d60ceaf61fc8be6ec33ad8bf6ccf8-, p@chr8:48911486..48911495
5.63e-63FFCP PHASE1:Hg19::chrX:65382591..65382602,+#_3070d0fe362e76ce66d0d16851595bd8p9@HEPH
5.63e-63FFCP PHASE2:Hg19::chrX:65382591..65382602,+#_3070d0fe362e76ce66d0d16851595bd8p9@HEPH
8.34e-63FFCP PHASE2:Mm9::chr7:148106817..148106828,+#_38b9259134d4876a83738447c2e59628p3@Nlrp6
8.34e-63FFCP PHASE1:Mm9::chr7:148106817..148106828,+#_38b9259134d4876a83738447c2e59628p3@Nlrp6
9.83e-63FFCP PHASE1:Mm9::chr9:56091842..56091854,-#_1bc286effe55de877b3a163b73c21521p@chr9:56091842..56091854, -
9.83e-63FFCP PHASE2:Mm9::chr9:56091842..56091854,-#_1bc286effe55de877b3a163b73c21521p@chr9:56091842..56091854, -
1.44e-62FFCP PHASE1:Hg19::chr12:14849470..14849540,-#_bff5b053adb742e07b68d4317afa86c6p1@GUCY2C
1.44e-62FFCP PHASE2:Hg19::chr12:14849470..14849540,-#_bff5b053adb742e07b68d4317afa86c6p1@GUCY2C
5.34e-62FFCP PHASE1:Mm9::chr2:14096119..14096136,+#_3d1039088aca7fb3bea69861d2998c29p3@Fam23a
5.34e-62FFCP PHASE2:Mm9::chr2:14096119..14096136,+#_3d1039088aca7fb3bea69861d2998c29p3@Fam23a
6.28e-62FFCP PHASE1:Mm9::chr6:48845213..48845232,+#_4394b4944af4e1140f15c7791f3852f9p4@Abp1
6.28e-62FFCP PHASE2:Mm9::chr6:48845213..48845232,+#_4394b4944af4e1140f15c7791f3852f9p4@Abp1
7.0e-62FFCP PHASE1:Hg19::chr13:28543316..28543329,-#_85f74d0bcc99ae791a4d47d88de62b24p4@CDX2
7.0e-62FFCP PHASE2:Hg19::chr13:28543316..28543329,-#_85f74d0bcc99ae791a4d47d88de62b24p4@CDX2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of the alimentary canal bounded anteriorly by the pyloric sphincter and posteriorly by the cloacal sphincter.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.