Personal tools

UBERON:0000305

From FANTOM5_SSTAR

Jump to: navigation, search

Name:amnion
Namespace:FANTOM
Definition:"A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called 遯カ蟒」mniota遯カ�; but not in amphibians and fish (Ichthyopsida), which are consequently termed 遯カ蟒」namniota遯カ�. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion]
Xrefs:
links:

BTO:0000065
EHDAA2:0000116
EHDAA:136
EMAPA:16109
EV:0100122
FMA:80223
GAID:1298
[ Gray14.png Gray14.png]
MESH:A.16.254.403.277
ncithesaurus:Amnion
SCTID:181457005

VHOG:0000721
Alt_id: UBERON:BTO_0000065-FMA_80223

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005631(extraembryonic membrane)
develops_from:UBERON:0005971(amniotic fold)



Children

derives from:FF:0000010 (human amniotic membrane cell- Amnion sample),FF:0011386 (mouse amnion - adult pregnant day17.5 sample)
part of:FF:0000010 (human amniotic membrane cell- Amnion sample),CL:0002536 (amniotic epithelial cell),CL:0002537 (amnion mesenchymal stem cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000305 (amnion), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.07e-86FFCP PHASE1:Mm9::chr4:43043312..43043317,-#_ea24fa935f6b043451af56f5445061bap4@Stoml2
3.07e-86FFCP PHASE2:Mm9::chr13:41014050..41014058,+#_ea24fa935f6b043451af56f5445061bap@chr13:41014050..41014058, +
3.07e-86FFCP PHASE1:Mm9::chr13:41014050..41014058,+#_ea24fa935f6b043451af56f5445061ba+, p@chr13:41014050..41014058
3.07e-86FFCP PHASE1:Mm9::chr6:116597799..116597823,-#_ea24fa935f6b043451af56f5445061bap@chr6:116597799..116597823, -
3.07e-86FFCP PHASE2:Mm9::chr15:33003311..33003317,-#_ea24fa935f6b043451af56f5445061bap@chr15:33003311..33003317, -
3.07e-86FFCP PHASE2:Mm9::chr1:140478890..140478902,-#_ea24fa935f6b043451af56f5445061bap@chr1:140478890..140478902, -
3.07e-86FFCP PHASE1:Mm9::chr14:55990290..55990292,+#_ea24fa935f6b043451af56f5445061bap@chr14:55990290..55990292, +
3.07e-86FFCP PHASE1:Mm9::chr1:71760739..71760747,+#_ea24fa935f6b043451af56f5445061bap@chr1:71760739..71760747, +
3.07e-86FFCP PHASE2:Mm9::chr2:145704607..145704614,+#_ea24fa935f6b043451af56f5445061bap@chr2:145704607..145704614, +
3.07e-86FFCP PHASE2:Mm9::chr4:12074919..12074933,-#_ea24fa935f6b043451af56f5445061bap@chr4:12074919..12074933, -
3.07e-86FFCP PHASE2:Mm9::chr1:144508809..144508810,+#_ea24fa935f6b043451af56f5445061bap@chr1:144508809..144508810, +
3.07e-86FFCP PHASE1:Mm9::chr17:25134796..25134826,-#_ea24fa935f6b043451af56f5445061bap@chr17:25134796..25134826, -
3.07e-86FFCP PHASE2:Mm9::chr15:75882346..75882372,-#_ea24fa935f6b043451af56f5445061bap@chr15:75882346..75882372, -
3.07e-86FFCP PHASE2:Mm9::chr11:54720278..54720283,+#_ea24fa935f6b043451af56f5445061bap@chr11:54720278..54720283, +
3.07e-86FFCP PHASE1:Mm9::chrX:12833809..12833838,+#_ea24fa935f6b043451af56f5445061bap@chrX:12833809..12833838, +
3.07e-86FFCP PHASE1:Mm9::chr9:14480461..14480472,-#_ea24fa935f6b043451af56f5445061bap@chr9:14480461..14480472, -
3.07e-86FFCP PHASE1:Mm9::chr2:132106890..132106933,+#_ea24fa935f6b043451af56f5445061bap@chr2:132106890..132106933, +
3.07e-86FFCP PHASE1:Mm9::chr9:51912341..51912365,+#_ea24fa935f6b043451af56f5445061bap@chr9:51912341..51912365, +
3.07e-86FFCP PHASE1:Mm9::chr6:31569960..31569984,+#_ea24fa935f6b043451af56f5445061bap@chr6:31569960..31569984, +
3.07e-86FFCP PHASE1:Mm9::chr10:83099058..83099067,-#_ea24fa935f6b043451af56f5445061bap@chr10:83099058..83099067, -
3.07e-86FFCP PHASE1:Mm9::chr3:31973017..31973023,+#_ea24fa935f6b043451af56f5445061bap@chr3:31973017..31973023, +
3.07e-86FFCP PHASE2:Mm9::chr11:8479207..8479215,-#_ea24fa935f6b043451af56f5445061bap21@Tns3
3.07e-86FFCP PHASE1:Mm9::chr3:6785485..6785487,-#_ea24fa935f6b043451af56f5445061bap@chr3:6785485..6785487, -
3.07e-86FFCP PHASE1:Mm9::chr13:13955172..13955179,-#_ea24fa935f6b043451af56f5445061bap@chr13:13955172..13955179, -
3.07e-86FFCP PHASE1:Mm9::chr8:109945451..109945458,-#_ea24fa935f6b043451af56f5445061bap2@Nob1
3.07e-86FFCP PHASE2:Mm9::chr17:25134796..25134826,-#_ea24fa935f6b043451af56f5445061bap@chr17:25134796..25134826, -
3.07e-86FFCP PHASE2:Mm9::chr14:15255734..15255745,-#_ea24fa935f6b043451af56f5445061bap@chr14:15255734..15255745, -
3.07e-86FFCP PHASE2:Mm9::chr13:13955172..13955179,-#_ea24fa935f6b043451af56f5445061bap@chr13:13955172..13955179, -
3.07e-86FFCP PHASE1:Mm9::chr2:151366511..151366518,+#_ea24fa935f6b043451af56f5445061bap@chr2:151366511..151366518, +
3.07e-86FFCP PHASE1:Mm9::chr11:8479207..8479215,-#_ea24fa935f6b043451af56f5445061bap21@Tns3
3.07e-86FFCP PHASE2:Mm9::chr4:57133028..57133046,-#_ea24fa935f6b043451af56f5445061bap15@Epb4.1l4b
3.07e-86FFCP PHASE1:Mm9::chr3:94484780..94484795,-#_ea24fa935f6b043451af56f5445061bap@chr3:94484780..94484795, -
3.07e-86FFCP PHASE2:Mm9::chr2:119773835..119773842,+#_ea24fa935f6b043451af56f5445061bap@chr2:119773835..119773842, +
3.07e-86FFCP PHASE2:Mm9::chr13:34338500..34338511,-#_ea24fa935f6b043451af56f5445061bap@chr13:34338500..34338511, -
3.07e-86FFCP PHASE1:Mm9::chr17:35161081..35161090,+#_ea24fa935f6b043451af56f5445061bap@chr17:35161081..35161090, +
3.07e-86FFCP PHASE2:Mm9::chr1:74197226..74197270,-#_ea24fa935f6b043451af56f5445061bap@chr1:74197226..74197270, -
3.07e-86FFCP PHASE2:Mm9::chr11:7060053..7060066,+#_ea24fa935f6b043451af56f5445061bap@chr11:7060053..7060066, +
3.07e-86FFCP PHASE2:Mm9::chr1:71780113..71780133,+#_ea24fa935f6b043451af56f5445061bap@chr1:71780113..71780133, +
3.07e-86FFCP PHASE1:Mm9::chr12:61822745..61822749,+#_ea24fa935f6b043451af56f5445061bap@chr12:61822745..61822749, +
3.07e-86FFCP PHASE2:Mm9::chr9:57862279..57862314,+#_ea24fa935f6b043451af56f5445061bap@chr9:57862279..57862314, +
3.07e-86FFCP PHASE2:Mm9::chr2:32785262..32785287,-#_ea24fa935f6b043451af56f5445061bap@chr2:32785262..32785287, -
3.07e-86FFCP PHASE1:Mm9::chr11:7060053..7060066,+#_ea24fa935f6b043451af56f5445061ba+, p@chr11:7060053..7060066
3.07e-86FFCP PHASE1:Mm9::chr7:106855146..106855162,-#_ea24fa935f6b043451af56f5445061bap4@Slco2b1
3.07e-86FFCP PHASE1:Mm9::chr15:33003311..33003317,-#_ea24fa935f6b043451af56f5445061bap@chr15:33003311..33003317, -
3.07e-86FFCP PHASE1:Mm9::chr4:118547872..118547876,+#_ea24fa935f6b043451af56f5445061bap@chr4:118547872..118547876, +
3.07e-86FFCP PHASE2:Mm9::chr9:46018791..46018808,+#_ea24fa935f6b043451af56f5445061bap@chr9:46018791..46018808, +
3.07e-86FFCP PHASE2:Mm9::chr3:94484780..94484795,-#_ea24fa935f6b043451af56f5445061bap@chr3:94484780..94484795, -
3.07e-86FFCP PHASE2:Mm9::chr15:3587418..3587428,+#_ea24fa935f6b043451af56f5445061bap@chr15:3587418..3587428, +
3.07e-86FFCP PHASE1:Mm9::chr9:57862279..57862314,+#_ea24fa935f6b043451af56f5445061bap@chr9:57862279..57862314, +
3.07e-86FFCP PHASE2:Mm9::chr3:52540380..52540384,+#_ea24fa935f6b043451af56f5445061bap@chr3:52540380..52540384, +
3.07e-86FFCP PHASE2:Mm9::chr9:14480461..14480472,-#_ea24fa935f6b043451af56f5445061bap@chr9:14480461..14480472, -
3.07e-86FFCP PHASE1:Mm9::chr9:46018679..46018690,+#_ea24fa935f6b043451af56f5445061bap@chr9:46018679..46018690, +
3.07e-86FFCP PHASE2:Mm9::chr1:75130147..75130152,-#_ea24fa935f6b043451af56f5445061bap@chr1:75130147..75130152, -
3.07e-86FFCP PHASE2:Mm9::chr1:140478947..140478956,-#_ea24fa935f6b043451af56f5445061bap@chr1:140478947..140478956, -
3.07e-86FFCP PHASE1:Mm9::chr4:57133028..57133046,-#_ea24fa935f6b043451af56f5445061bap15@Epb4.1l4b
3.07e-86FFCP PHASE2:Mm9::chr11:109215013..109215035,+#_ea24fa935f6b043451af56f5445061bap@chr11:109215013..109215035, +
3.07e-86FFCP PHASE1:Mm9::chr9:14480480..14480485,-#_ea24fa935f6b043451af56f5445061ba-, p@chr9:14480480..14480485
3.07e-86FFCP PHASE1:Mm9::chr1:144508809..144508810,+#_ea24fa935f6b043451af56f5445061bap@chr1:144508809..144508810, +
3.07e-86FFCP PHASE2:Mm9::chr18:63854526..63854533,-#_ea24fa935f6b043451af56f5445061bap@chr18:63854526..63854533, -
3.07e-86FFCP PHASE2:Mm9::chr2:52811703..52811738,+#_ea24fa935f6b043451af56f5445061bap@chr2:52811703..52811738, +
3.07e-86FFCP PHASE1:Mm9::chr2:151366529..151366534,+#_ea24fa935f6b043451af56f5445061bap@chr2:151366529..151366534, +
3.07e-86FFCP PHASE1:Mm9::chr2:32785262..32785287,-#_ea24fa935f6b043451af56f5445061bap@chr2:32785262..32785287, -
3.07e-86FFCP PHASE2:Mm9::chr10:85794397..85794405,+#_ea24fa935f6b043451af56f5445061bap@chr10:85794397..85794405, +
3.07e-86FFCP PHASE1:Mm9::chr2:145704563..145704575,+#_ea24fa935f6b043451af56f5445061bap@chr2:145704563..145704575, +
3.07e-86FFCP PHASE2:Mm9::chr17:35161052..35161058,+#_ea24fa935f6b043451af56f5445061bap@chr17:35161052..35161058, +
3.07e-86FFCP PHASE1:Mm9::chr4:154591314..154591321,-#_ea24fa935f6b043451af56f5445061bap@chr4:154591314..154591321, -
3.07e-86FFCP PHASE1:Mm9::chr11:78250793..78250794,-#_ea24fa935f6b043451af56f5445061bap@chr11:78250793..78250794, -
3.07e-86FFCP PHASE2:Mm9::chr11:11953937..11953941,+#_ea24fa935f6b043451af56f5445061bap@chr11:11953937..11953941, +
3.07e-86FFCP PHASE1:Mm9::chr15:4592969..4592972,-#_ea24fa935f6b043451af56f5445061bap@chr15:4592969..4592972, -
3.07e-86FFCP PHASE2:Mm9::chr2:32785308..32785316,-#_ea24fa935f6b043451af56f5445061bap@chr2:32785308..32785316, -
3.07e-86FFCP PHASE2:Mm9::chr6:49322345..49322382,+#_ea24fa935f6b043451af56f5445061bap@chr6:49322345..49322382, +
3.07e-86FFCP PHASE1:Mm9::chr1:74197226..74197270,-#_ea24fa935f6b043451af56f5445061bap@chr1:74197226..74197270, -
3.07e-86FFCP PHASE1:Mm9::chr5:123402694..123402698,-#_ea24fa935f6b043451af56f5445061bap34@Kdm2b
3.07e-86FFCP PHASE2:Mm9::chrX:136335269..136335280,+#_ea24fa935f6b043451af56f5445061bap6@Cldn2
3.07e-86FFCP PHASE2:Mm9::chr6:116597883..116597886,-#_ea24fa935f6b043451af56f5445061bap@chr6:116597883..116597886, -
3.07e-86FFCP PHASE1:Mm9::chr17:88082166..88082167,-#_ea24fa935f6b043451af56f5445061bap@chr17:88082166..88082167, -
3.07e-86FFCP PHASE2:Mm9::chr7:106855146..106855162,-#_ea24fa935f6b043451af56f5445061bap4@Slco2b1
3.07e-86FFCP PHASE1:Mm9::chr19:30189733..30189737,-#_ea24fa935f6b043451af56f5445061bap@chr19:30189733..30189737, -
3.07e-86FFCP PHASE1:Mm9::chr11:54720278..54720283,+#_ea24fa935f6b043451af56f5445061bap@chr11:54720278..54720283, +
3.07e-86FFCP PHASE1:Mm9::chr1:172988209..172988210,-#_ea24fa935f6b043451af56f5445061bap7@Fcgr3
3.07e-86FFCP PHASE2:Mm9::chr12:100615157..100615164,-#_ea24fa935f6b043451af56f5445061bap@chr12:100615157..100615164, -
3.07e-86FFCP PHASE2:Mm9::chr9:14480480..14480485,-#_ea24fa935f6b043451af56f5445061bap@chr9:14480480..14480485, -
3.07e-86FFCP PHASE1:Mm9::chr6:116597883..116597886,-#_ea24fa935f6b043451af56f5445061bap@chr6:116597883..116597886, -
3.07e-86FFCP PHASE1:Mm9::chr1:140478890..140478902,-#_ea24fa935f6b043451af56f5445061bap@chr1:140478890..140478902, -
3.07e-86FFCP PHASE1:Mm9::chr11:94369661..94369663,-#_ea24fa935f6b043451af56f5445061bap@chr11:94369661..94369663, -
3.07e-86FFCP PHASE1:Mm9::chr7:53922673..53922686,-#_ea24fa935f6b043451af56f5445061bap6@Tph1
3.07e-86FFCP PHASE1:Mm9::chr9:46018791..46018808,+#_ea24fa935f6b043451af56f5445061bap@chr9:46018791..46018808, +
3.07e-86FFCP PHASE1:Mm9::chr1:71780113..71780133,+#_ea24fa935f6b043451af56f5445061bap@chr1:71780113..71780133, +
3.07e-86FFCP PHASE2:Mm9::chr7:151937929..151937932,-#_ea24fa935f6b043451af56f5445061bap8@Ano1
3.07e-86FFCP PHASE2:Mm9::chr19:4603074..4603079,+#_ea24fa935f6b043451af56f5445061bap@chr19:4603074..4603079, +
3.07e-86FFCP PHASE1:Mm9::chr18:63854526..63854533,-#_ea24fa935f6b043451af56f5445061bap@chr18:63854526..63854533, -
3.07e-86FFCP PHASE2:Mm9::chrX:12833809..12833838,+#_ea24fa935f6b043451af56f5445061bap@chrX:12833809..12833838, +
3.07e-86FFCP PHASE1:Mm9::chr12:100615157..100615164,-#_ea24fa935f6b043451af56f5445061bap@chr12:100615157..100615164, -
3.07e-86FFCP PHASE2:Mm9::chr10:83099058..83099067,-#_ea24fa935f6b043451af56f5445061bap@chr10:83099058..83099067, -
3.07e-86FFCP PHASE2:Mm9::chr11:54720329..54720337,+#_ea24fa935f6b043451af56f5445061bap@chr11:54720329..54720337, +
3.07e-86FFCP PHASE1:Mm9::chr9:14480492..14480498,-#_ea24fa935f6b043451af56f5445061bap@chr9:14480492..14480498, -
3.07e-86FFCP PHASE1:Mm9::chr13:34338500..34338511,-#_ea24fa935f6b043451af56f5445061ba-, p@chr13:34338500..34338511
3.07e-86FFCP PHASE2:Mm9::chr17:88082166..88082167,-#_ea24fa935f6b043451af56f5445061bap@chr17:88082166..88082167, -
3.07e-86FFCP PHASE2:Mm9::chr15:78342886..78342906,-#_ea24fa935f6b043451af56f5445061bap@chr15:78342886..78342906, -
3.07e-86FFCP PHASE1:Mm9::chr6:128229148..128229155,-#_ea24fa935f6b043451af56f5445061bap@chr6:128229148..128229155, -