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UBERON:0000369

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Name:corpus striatum
Namespace:FANTOM
Definition:"The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum]
Xrefs:
links:

BTO:0001311
EFO:0000381
EMAPA:17549
EV:0100184
FMA:77616
GAID:667
[ 200px-Gray656.png 200px-Gray656.png]
MESH:A.08.186.211.730.885.105.487
ncithesaurus:Corpus_Striatum
SCTID:279318005

VHOG:0001175
Synonyms: "striate body" RELATED [BTO:0001311]
"striated body" RELATED [BTO:0001311]
Comments:The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2] * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum
Alt_id: UBERON:BTO_0001311-FMA_77616

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002616(regional part of brain)
develops_from:UBERON:0010082(future corpus striatum)
part_of:UBERON:0002420(basal ganglion)



Children

derives from:FF:0011288 (mouse corpus striatum- adult sample),FF:0011392 (mouse corpus striatum- neonate N00 sample)
part of:UBERON:0001873 (caudate nucleus),UBERON:0002435 (striatum)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000369 (corpus striatum), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_47f376a0978832f9395eb029678d0732p@chr12:6031299..6031315, -
2.57e-195FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_47f376a0978832f9395eb029678d0732p@chr13:112726433..112726446, +
2.57e-195FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_47f376a0978832f9395eb029678d0732p@chr14:78638610..78638621, +
2.57e-195FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_47f376a0978832f9395eb029678d0732p@chr18:47967428..47967437, -
2.57e-195FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_47f376a0978832f9395eb029678d0732p@chr1:31352916..31352926, -
2.57e-195FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_47f376a0978832f9395eb029678d0732p@chr12:6031299..6031315, -
2.57e-195FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_47f376a0978832f9395eb029678d0732p@chr18:47967428..47967437, -
2.57e-195FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_47f376a0978832f9395eb029678d0732p@chr1:31352916..31352926, -
2.57e-195FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_47f376a0978832f9395eb029678d0732p@chr13:112726433..112726446, +
2.57e-195FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_47f376a0978832f9395eb029678d0732p@chr2:152828264..152828299, -
2.57e-195FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_47f376a0978832f9395eb029678d0732p@chr2:152828264..152828299, -
2.57e-195FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_47f376a0978832f9395eb029678d0732p@chr14:78638610..78638621, +
6.72e-157FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr15:35546024..35546035, -
6.72e-157FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr3:57807798..57807809, +
6.72e-157FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr2:3853961..3853984, +
6.72e-157FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr10:97261874..97261887, -
6.72e-157FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr15:35546024..35546035, -
6.72e-157FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr17:19390211..19390223, +
6.72e-157FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr20:9496091..9496106, +
6.72e-157FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p2@BC051739
6.72e-157FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr2:3853961..3853984, +
6.72e-157FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_dcff6c7eed4e767ba3bafbdfc5dcd559+, p@chr3:57807798..57807809
6.72e-157FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr20:9496091..9496106, +
6.72e-157FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p2@BC051739
6.72e-157FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr10:97261874..97261887, -
6.72e-157FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_dcff6c7eed4e767ba3bafbdfc5dcd559p@chr17:19390211..19390223, +
1.5e-156FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_a11a9965d44c69c72473f77b10d520dep23@KCNAB1
1.5e-156FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_a11a9965d44c69c72473f77b10d520dep23@KCNAB1
3.35e-156FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_defc547151d1f56fa5192373d93aefedp6@SYNDIG1L
3.35e-156FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_defc547151d1f56fa5192373d93aefedp6@SYNDIG1L
6.94e-147FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr15:37777334..37777345, -
6.94e-147FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_0c08d89b2ad2f5a61d5edc1aeda6f212+, p@chr3:63542313..63542321
6.94e-147FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chrX:102663083..102663098, +
6.94e-147FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr11:47617035..47617045, -
6.94e-147FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p11@SCN8A
6.94e-147FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p2@DGKH
6.94e-147FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr15:37777334..37777345, -
6.94e-147FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr3:63542313..63542321, +
6.94e-147FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr4:71945904..71945922, +
6.94e-147FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p5@ENST00000514240
6.94e-147FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p22@PRLR
6.94e-147FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p11@SCN8A
6.94e-147FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr4:71945904..71945922, +
6.94e-147FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p5@ENST00000514240
6.94e-147FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr8:115354253..115354290, +
6.94e-147FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p22@PRLR
6.94e-147FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr17:7271778..7271784, +
6.94e-147FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p27@GNAL
6.94e-147FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr18:47967443..47967452, -
6.94e-147FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr18:54898506..54898515, +
6.94e-147FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr8:115354253..115354290, +
6.94e-147FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p2@DGKH
6.94e-147FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr17:7271778..7271784, +
6.94e-147FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p27@GNAL
6.94e-147FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr18:47967443..47967452, -
6.94e-147FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr18:54898506..54898515, +
6.94e-147FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chrX:102663083..102663098, +
6.94e-147FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_0c08d89b2ad2f5a61d5edc1aeda6f212p@chr11:47617035..47617045, -
2.79e-131FFCP PHASE2:Hg19::chr10:97261796..97261806,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr10:97261796..97261806, -
2.79e-131FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr10:97261901..97261919, -
2.79e-131FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr11:26497871..26497889, +
2.79e-131FFCP PHASE1:Hg19::chr2:234227370..234227385,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr2:234227370..234227385, +
2.79e-131FFCP PHASE1:Hg19::chr3:63428975..63428978,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep10@SYNPR
2.79e-131FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr3:63428975..63428978,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep10@SYNPR
2.79e-131FFCP PHASE1:Hg19::chr10:97261796..97261806,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr10:97261796..97261806, -
2.79e-131FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr10:97261901..97261919, -
2.79e-131FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr11:26497871..26497889, +
2.79e-131FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_db98ee5ffc7804cf4a5eec7b3d866e8ep@chr2:234227370..234227385, +
3.91e-131FFCP PHASE1:Hg19::chr7:111424575..111424587,-#_c25e680d933a387a15f5d6bf28912821p9@DOCK4
3.91e-131FFCP PHASE2:Hg19::chr7:111424575..111424587,-#_c25e680d933a387a15f5d6bf28912821p9@DOCK4
3.91e-131FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_c25e680d933a387a15f5d6bf28912821p1@ENST00000421878
3.91e-131FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_c25e680d933a387a15f5d6bf28912821p1@ENST00000421878
5.46e-131FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_d12eba93ebfb70e08334697abf61b12ep@chr19:1236637..1236645, -
5.46e-131FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_d12eba93ebfb70e08334697abf61b12ep@chr2:212989626..212989648, -
5.46e-131FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_d12eba93ebfb70e08334697abf61b12ep@chr2:212989626..212989648, -
5.46e-131FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_d12eba93ebfb70e08334697abf61b12ep8@CADM2
5.46e-131FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_d12eba93ebfb70e08334697abf61b12ep1@LINC00523
5.46e-131FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_d12eba93ebfb70e08334697abf61b12ep8@CADM2
5.46e-131FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_d12eba93ebfb70e08334697abf61b12ep@chr19:1236637..1236645, -
5.46e-131FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_d12eba93ebfb70e08334697abf61b12ep1@LINC00523
1.07e-130FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_4e00f84e6e28e8799a4629e58719b11fp8@ANO3
1.07e-130FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_4e00f84e6e28e8799a4629e58719b11fp14@ADORA2A
1.07e-130FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_4e00f84e6e28e8799a4629e58719b11fp8@ANO3
1.07e-130FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_4e00f84e6e28e8799a4629e58719b11fp14@ADORA2A
4.07e-130FFCP PHASE2:Hg19::chr16:84027018..84027029,+#_1ff2c933ae3bf60d221685ef77ed3ce7p@chr16:84027018..84027029, +
4.07e-130FFCP PHASE1:Hg19::chr16:84027018..84027029,+#_1ff2c933ae3bf60d221685ef77ed3ce7p@chr16:84027018..84027029, +
5.62e-113FFCP PHASE1:Hg19::chr3:154147920..154147931,-#_2d167f25acd589c475955d91795e2c6ep3@GPR149
5.62e-113FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_2d167f25acd589c475955d91795e2c6ep@chr13:98995904..98995913, +
5.62e-113FFCP PHASE2:Hg19::chr3:154147920..154147931,-#_2d167f25acd589c475955d91795e2c6ep3@GPR149
5.62e-113FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_2d167f25acd589c475955d91795e2c6ep@chr13:98995904..98995913, +
7.5e-113FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_c63482ec1bef320e45dfabf1fac497c4p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE1:Hg19::chrX:37765754..37765765,+#_c63482ec1bef320e45dfabf1fac497c4p11@ENST00000449263
7.5e-113FFCP PHASE2:Hg19::chrX:37765754..37765765,+#_c63482ec1bef320e45dfabf1fac497c4p11@ENST00000449263
7.5e-113FFCP PHASE1:Hg19::chr6:12890045..12890049,+#_c63482ec1bef320e45dfabf1fac497c4p@chr6:12890045..12890049, +
7.5e-113FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_c63482ec1bef320e45dfabf1fac497c4p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE2:Hg19::chr6:12890045..12890049,+#_c63482ec1bef320e45dfabf1fac497c4p@chr6:12890045..12890049, +
1.0e-112FFCP PHASE2:Hg19::chr2:242171468..242171498,-#_872352729f6ab857663ef16c7c9d50bap@chr2:242171468..242171498, -
1.0e-112FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_872352729f6ab857663ef16c7c9d50bap@chr2:7112752..7112770, +