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UBERON:0000930

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Name:stomodeum
Namespace:FANTOM
Definition:"Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth[ZFA]. In humans, a depression between the brain and the pericardium in an embryo, and is the precursor of the mouth and the anterior lobe of the pituitary gland. The stomodeum is lined by ectoderm, and is separated from the anterior end of the fore-gut by the buccopharyngeal membrane. This membrane is devoid of mesoderm, being formed by the apposition of the stomodeal ectoderm with the fore-gut endoderm; at the end of the third week it disappears, and thus a communication is established between the mouth and the future pharynx[WP]. The anterior part of the embryonic digestive system deriving from the stomodeal invagination of the ectoderm[FBbt]." [Wikipedia:Stomodeum]
Xrefs:
links:

BTO:0004224
EHDAA2:0001929
EMAPA:16263
FBbt:00000439
[ Gray977.png Gray977.png]
[ 200px-Gray977.png 200px-Gray977.png]
ncithesaurus:Stomodeum
TAO:0001290
TGMA:0000135
XAO:0000269

ZFA:0001290
Synonyms: "mouth primordium" EXACT [XAO:0000269]
"primitive oral cavity" EXACT [UBERON:cjm]
"stomatodeum" EXACT [Wikipedia:Stomodeum]
"stomodaeum" EXACT []
Comments:Editor note: consider indicating location. e.g. anterior. Note some AOs place this as part of oral opening, but it's not clear when this structure comes into existence. Taxon note: This class groups together disparate structures as all being the anterior part of the early metazoan digestive tract and precursor of the mouth. However, the developmental processes vary, so this class may be split in future. E.g. in mammals it is a rostral depression surrounded by prominences. Outgrowth of the prominences produces a stomodeal cavity.
Alt_id: UBERON:FBbt_00000439-ZFA_0001290
Subset: grouping_class
uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000481(multi-tissue structure),UBERON:0002050(embryonic structure)
part_of:UBERON:0000924(ectoderm),UBERON:0007026(primitive gut)



Children

develops from:UBERON:0000165 (mouth),UBERON:0005356 (Rathke's pouch)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000930 (stomodeum), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr15:91729805..91729815,+#_f76fa4f8eb3972415b3beccd4b08ac1cp@chr15:91729805..91729815, +
1.87e-86FFCP PHASE1:Mm9::chr12:57793900..57793908,-#_f76fa4f8eb3972415b3beccd4b08ac1cp@chr12:57793900..57793908, -
1.87e-86FFCP PHASE2:Mm9::chr15:91729805..91729815,+#_f76fa4f8eb3972415b3beccd4b08ac1cp@chr15:91729805..91729815, +
1.87e-86FFCP PHASE2:Mm9::chr15:91668686..91668696,+#_f76fa4f8eb3972415b3beccd4b08ac1cp2@Smgc
1.87e-86FFCP PHASE1:Mm9::chr15:91668686..91668696,+#_f76fa4f8eb3972415b3beccd4b08ac1cp2@Smgc
1.87e-86FFCP PHASE2:Mm9::chr12:57793900..57793908,-#_f76fa4f8eb3972415b3beccd4b08ac1cp@chr12:57793900..57793908, -
2.11e-67FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_2baec2f614cf12fed3c37f55f61bc580p@chr1:75599672..75599682, -
2.11e-67FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_2baec2f614cf12fed3c37f55f61bc580p@chr1:75599672..75599682, -
2.86e-62FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_0fe7abe4097e33404dc064a828baca2fp1@ENST00000427892, p1@uc001dgp.1
2.86e-62FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_0fe7abe4097e33404dc064a828baca2fp1@ENST00000427892, p1@uc001dgp.1
7.26e-62FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_c0490f0e0c0d0c811fbead147844d92bp2@PAX9
7.26e-62FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_c0490f0e0c0d0c811fbead147844d92bp2@PAX9
1.17e-59FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_bb67b42fd3fa7331e9b41cc55b9bc222p@chr1:75599683..75599699, -
1.17e-59FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_bb67b42fd3fa7331e9b41cc55b9bc222-, p@chr1:75599683..75599699
1.68e-58FFCP PHASE2:Mm9::chr6:60435965..60435986,+#_bf644222806663af1750983dc003c965p@chr6:60435965..60435986, +
1.68e-58FFCP PHASE2:Mm9::chr7:51271323..51271366,+#_bf644222806663af1750983dc003c965p@chr7:51271323..51271366, +
1.68e-58FFCP PHASE1:Mm9::chr1:52741574..52741579,+#_bf644222806663af1750983dc003c965p@chr1:52741574..52741579, +
1.68e-58FFCP PHASE2:Mm9::chr1:52741574..52741579,+#_bf644222806663af1750983dc003c965p@chr1:52741574..52741579, +
1.68e-58FFCP PHASE1:Mm9::chr6:60435965..60435986,+#_bf644222806663af1750983dc003c965p@chr6:60435965..60435986, +
1.68e-58FFCP PHASE2:Mm9::chr10:28755265..28755269,-#_bf644222806663af1750983dc003c965p@chr10:28755265..28755269, -
1.68e-58FFCP PHASE1:Mm9::chr10:28755265..28755269,-#_bf644222806663af1750983dc003c965p@chr10:28755265..28755269, -
1.68e-58FFCP PHASE1:Mm9::chr7:51271323..51271366,+#_bf644222806663af1750983dc003c965p@chr7:51271323..51271366, +
3.28e-58FFCP PHASE2:Mm9::chr10:28693770..28693774,-#_d3f8cbb3da88a7623480811661d52589p5@2310057J18Rik
3.28e-58FFCP PHASE1:Mm9::chr2:153839410..153839423,+#_d3f8cbb3da88a7623480811661d52589p6@Bpifa2e
3.28e-58FFCP PHASE2:Mm9::chr6:132314147..132314153,-#_d3f8cbb3da88a7623480811661d52589p1@Gm4736, p1@Gm8882
3.28e-58FFCP PHASE2:Mm9::chr2:153837176..153837187,+#_d3f8cbb3da88a7623480811661d52589p@chr2:153837176..153837187, +
3.28e-58FFCP PHASE1:Mm9::chr2:153840649..153840658,+#_d3f8cbb3da88a7623480811661d52589p8@Bpifa2e
3.28e-58FFCP PHASE2:Mm9::chr2:153840649..153840658,+#_d3f8cbb3da88a7623480811661d52589p8@Bpifa2e
3.28e-58FFCP PHASE1:Mm9::chr6:132314147..132314153,-#_d3f8cbb3da88a7623480811661d52589p1@Gm4736, p1@Gm8882
3.28e-58FFCP PHASE1:Mm9::chr2:153837176..153837187,+#_d3f8cbb3da88a7623480811661d52589p@chr2:153837176..153837187, +
3.28e-58FFCP PHASE2:Mm9::chr2:153839410..153839423,+#_d3f8cbb3da88a7623480811661d52589p6@Bpifa2e
3.28e-58FFCP PHASE1:Mm9::chr10:28693770..28693774,-#_d3f8cbb3da88a7623480811661d52589p5@2310057J18Rik
3.3e-50FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_15df6bc62701a6d24ba11bfa97c54581p2@LHX8
3.3e-50FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_15df6bc62701a6d24ba11bfa97c54581p2@LHX8
1.66e-44FFCP PHASE2:Mm9::chr15:91736964..91737001,+#_2ef15e5a35801e5e01aaacc39e606d3ap@chr15:91736964..91737001, +
1.66e-44FFCP PHASE2:Mm9::chr10:28706137..28706150,-#_2ef15e5a35801e5e01aaacc39e606d3ap3@2310057J18Rik
1.66e-44FFCP PHASE1:Mm9::chr10:28706137..28706150,-#_2ef15e5a35801e5e01aaacc39e606d3ap3@2310057J18Rik
1.66e-44FFCP PHASE1:Mm9::chr15:91736964..91737001,+#_2ef15e5a35801e5e01aaacc39e606d3ap@chr15:91736964..91737001, +
2.07e-44FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_4e2f59d410d9a208b9db27d2ab00e247p1@ENST00000555639
2.07e-44FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_4e2f59d410d9a208b9db27d2ab00e247p1@ENST00000555639
2.75e-44FFCP PHASE1:Mm9::chr2:153835527..153835537,+#_22894423c4521d463b6ed8b75ee47d59p@chr2:153835527..153835537, +
2.75e-44FFCP PHASE2:Mm9::chr2:153835527..153835537,+#_22894423c4521d463b6ed8b75ee47d59p@chr2:153835527..153835537, +
2.75e-44FFCP PHASE2:Mm9::chr2:153833963..153833980,+#_22894423c4521d463b6ed8b75ee47d59p5@Bpifa2e
2.75e-44FFCP PHASE1:Mm9::chr2:153833963..153833980,+#_22894423c4521d463b6ed8b75ee47d59p5@Bpifa2e
4.52e-44FFCP PHASE1:Mm9::chr11:99699383..99699387,-#_1525408a67c3c4d975a7095eff181b7dp1@2300003K06Rik
4.52e-44FFCP PHASE2:Mm9::chr6:131787182..131787209,+#_1525408a67c3c4d975a7095eff181b7dp@chr6:131787182..131787209, +
4.52e-44FFCP PHASE1:Mm9::chr3:129381353..129381363,-#_1525408a67c3c4d975a7095eff181b7dp@chr3:129381353..129381363, -
4.52e-44FFCP PHASE2:Mm9::chr14:58497252..58497259,+#_1525408a67c3c4d975a7095eff181b7d+, p@chr14:58497252..58497259
4.52e-44FFCP PHASE2:Mm9::chr6:93765798..93765806,-#_1525408a67c3c4d975a7095eff181b7dp@chr6:93765798..93765806, -
4.52e-44FFCP PHASE2:Mm9::chr7:51271652..51271675,+#_1525408a67c3c4d975a7095eff181b7dp@chr7:51271652..51271675, +
4.52e-44FFCP PHASE1:Mm9::chr17:40379328..40379333,-#_1525408a67c3c4d975a7095eff181b7dp2@Crisp3
4.52e-44FFCP PHASE2:Mm9::chr11:118524835..118524836,-#_1525408a67c3c4d975a7095eff181b7dp@chr11:118524835..118524836, -
4.52e-44FFCP PHASE1:Mm9::chr4:149563260..149563266,-#_1525408a67c3c4d975a7095eff181b7dp@chr4:149563260..149563266, -
4.52e-44FFCP PHASE1:Mm9::chr5:75379604..75379605,-#_1525408a67c3c4d975a7095eff181b7dp@chr5:75379604..75379605, -
4.52e-44FFCP PHASE1:Mm9::chr2:120942174..120942183,-#_1525408a67c3c4d975a7095eff181b7dp@chr2:120942174..120942183, -
4.52e-44FFCP PHASE2:Mm9::chr7:51234512..51234517,+#_1525408a67c3c4d975a7095eff181b7dp@chr7:51234512..51234517, +
4.52e-44FFCP PHASE1:Mm9::chr1:16804378..16804385,+#_1525408a67c3c4d975a7095eff181b7dp@chr1:16804378..16804385, +
4.52e-44FFCP PHASE2:Mm9::chr7:51254558..51254599,-#_1525408a67c3c4d975a7095eff181b7dp@chr7:51254558..51254599, -
4.52e-44FFCP PHASE1:Mm9::chr3:102324178..102324186,+#_1525408a67c3c4d975a7095eff181b7dp@chr3:102324178..102324186, +
4.52e-44FFCP PHASE1:Mm9::chr2:43039427..43039429,+#_1525408a67c3c4d975a7095eff181b7d+, p@chr2:43039427..43039429
4.52e-44FFCP PHASE2:Mm9::chr7:51464968..51464982,+#_1525408a67c3c4d975a7095eff181b7dp@chr7:51464968..51464982, +
4.52e-44FFCP PHASE1:Mm9::chr1:135228845..135228847,-#_1525408a67c3c4d975a7095eff181b7dp@chr1:135228845..135228847, -
4.52e-44FFCP PHASE1:Mm9::chr7:51268024..51268029,+#_1525408a67c3c4d975a7095eff181b7dp2@Egfbp2, p2@Klk1b26
4.52e-44FFCP PHASE2:Mm9::chr5:118350392..118350394,-#_1525408a67c3c4d975a7095eff181b7dp@chr5:118350392..118350394, -
4.52e-44FFCP PHASE2:Mm9::chr2:153834839..153834847,+#_1525408a67c3c4d975a7095eff181b7dp@chr2:153834839..153834847, +
4.52e-44FFCP PHASE2:Mm9::chr19:34035639..34035644,+#_1525408a67c3c4d975a7095eff181b7dp4@Lipf
4.52e-44FFCP PHASE1:Mm9::chr2:154026059..154026070,+#_1525408a67c3c4d975a7095eff181b7dp8@Bpifb1
4.52e-44FFCP PHASE2:Mm9::chr4:149563260..149563266,-#_1525408a67c3c4d975a7095eff181b7dp@chr4:149563260..149563266, -
4.52e-44FFCP PHASE1:Mm9::chr2:129874079..129874084,-#_1525408a67c3c4d975a7095eff181b7dp@chr2:129874079..129874084, -
4.52e-44FFCP PHASE2:Mm9::chr2:154026044..154026056,+#_1525408a67c3c4d975a7095eff181b7dp6@Bpifb1
4.52e-44FFCP PHASE2:Mm9::chr1:36155397..36155406,-#_1525408a67c3c4d975a7095eff181b7dp@chr1:36155397..36155406, -
4.52e-44FFCP PHASE2:Mm9::chr7:149031277..149031282,+#_1525408a67c3c4d975a7095eff181b7dp@chr7:149031277..149031282, +
4.52e-44FFCP PHASE2:Mm9::chr17:24092235..24092269,-#_1525408a67c3c4d975a7095eff181b7dp1@Sbpl
4.52e-44FFCP PHASE1:Mm9::chr7:51234512..51234517,+#_1525408a67c3c4d975a7095eff181b7dp@chr7:51234512..51234517, +
4.52e-44FFCP PHASE1:Mm9::chr16:22918330..22918340,+#_1525408a67c3c4d975a7095eff181b7dp11@Fetub
4.52e-44FFCP PHASE2:Mm9::chr17:40360870..40360872,-#_1525408a67c3c4d975a7095eff181b7dp@chr17:40360870..40360872, -
4.52e-44FFCP PHASE1:Mm9::chr18:70404027..70404032,-#_1525408a67c3c4d975a7095eff181b7dp@chr18:70404027..70404032, -
4.52e-44FFCP PHASE2:Mm9::chr15:73581208..73581213,+#_1525408a67c3c4d975a7095eff181b7dp@chr15:73581208..73581213, +
4.52e-44FFCP PHASE2:Mm9::chr7:51352815..51352824,+#_1525408a67c3c4d975a7095eff181b7dp@chr7:51352815..51352824, +
4.52e-44FFCP PHASE1:Mm9::chr9:43677486..43677488,+#_1525408a67c3c4d975a7095eff181b7dp@chr9:43677486..43677488, +
4.52e-44FFCP PHASE1:Mm9::chr8:27934890..27934902,-#_1525408a67c3c4d975a7095eff181b7dp@chr8:27934890..27934902, -
4.52e-44FFCP PHASE1:Mm9::chr7:51464968..51464982,+#_1525408a67c3c4d975a7095eff181b7dp@chr7:51464968..51464982, +
4.52e-44FFCP PHASE2:Mm9::chr1:16804330..16804337,+#_1525408a67c3c4d975a7095eff181b7dp@chr1:16804330..16804337, +
4.52e-44FFCP PHASE1:Mm9::chr5:37878237..37878242,+#_1525408a67c3c4d975a7095eff181b7dp@chr5:37878237..37878242, +
4.52e-44FFCP PHASE1:Mm9::chr17:40367824..40367826,-#_1525408a67c3c4d975a7095eff181b7dp@chr17:40367824..40367826, -
4.52e-44FFCP PHASE1:Mm9::chr4:149561552..149561559,+#_1525408a67c3c4d975a7095eff181b7dp@chr4:149561552..149561559, +
4.52e-44FFCP PHASE1:Mm9::chr19:34043253..34043264,+#_1525408a67c3c4d975a7095eff181b7dp@chr19:34043253..34043264, +
4.52e-44FFCP PHASE1:Mm9::chr8:95903671..95903681,-#_1525408a67c3c4d975a7095eff181b7dp3@Ces1h
4.52e-44FFCP PHASE2:Mm9::chr11:82420686..82420687,-#_1525408a67c3c4d975a7095eff181b7dp@chr11:82420686..82420687, -
4.52e-44FFCP PHASE2:Mm9::chr19:34039030..34039042,+#_1525408a67c3c4d975a7095eff181b7dp@chr19:34039030..34039042, +
4.52e-44FFCP PHASE1:Mm9::chr7:51361022..51361029,-#_1525408a67c3c4d975a7095eff181b7dp@chr7:51361022..51361029, -
4.52e-44FFCP PHASE2:Mm9::chr3:129460833..129460843,+#_1525408a67c3c4d975a7095eff181b7dp@chr3:129460833..129460843, +
4.52e-44FFCP PHASE2:Mm9::chr7:51395959..51395980,+#_1525408a67c3c4d975a7095eff181b7d+, p@chr7:51395959..51395980
4.52e-44FFCP PHASE1:Mm9::chr7:51271475..51271500,-#_1525408a67c3c4d975a7095eff181b7dp@chr7:51271475..51271500, -
4.52e-44FFCP PHASE2:Mm9::chr17:40369557..40369566,-#_1525408a67c3c4d975a7095eff181b7dp@chr17:40369557..40369566, -
4.52e-44FFCP PHASE2:Mm9::chr4:149561552..149561559,+#_1525408a67c3c4d975a7095eff181b7dp@chr4:149561552..149561559, +
4.52e-44FFCP PHASE2:Mm9::chr2:129870352..129870357,+#_1525408a67c3c4d975a7095eff181b7dp@chr2:129870352..129870357, +
4.52e-44FFCP PHASE2:Mm9::chr7:51225424..51225450,+#_1525408a67c3c4d975a7095eff181b7dp@chr7:51225424..51225450, +
4.52e-44FFCP PHASE1:Mm9::chr5:88757032..88757038,-#_1525408a67c3c4d975a7095eff181b7dp@chr5:88757032..88757038, -
4.52e-44FFCP PHASE2:Mm9::chr16:42166864..42166867,+#_1525408a67c3c4d975a7095eff181b7dp@chr16:42166864..42166867, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.