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UBERON:0000996

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Name:vagina
Namespace:FANTOM
Definition:"a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina.[FMA]" [FMA:19949, Wikipedia:Vagina]
Xrefs:
links:

BTO:0000243
EFO:0000976
EMAPA:18986
EV:0100117
FMA:19949
GAID:381
galen:Vagina
[1]
[2]
MA:0000394
MAT:0000128
MESH:A.05.360.319.779
MIAA:0000128
ncithesaurus:Vagina
OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA
SCTID:181441005

VHOG:0001138
Comments:Taxon notes (via vHOG): "The distal end of the oviducts differentiates as a vagina in Metatheria and Eutheria." Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective, Third Edition (2001) Orlando Fla.: Harcourt College Publishers, p.688
Alt_id: UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0013515(subdivision of uterine tube)
develops_from:UBERON:0000164(primitive urogenital sinus)
part_of:UBERON:0003975(internal female genitalia)



Children

is a:FF:0102936 (vaginal cell line)
derives from:FF:0010204 (human vagina - adult sample),FF:0011438 (mouse vagina- adult sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000996 (vagina), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.55e-98FFCP PHASE1:Hg19::chr9:131871258..131871269,-#_ad475468fc4395f13e60290ec96bc3f4p3@CRAT
2.55e-98FFCP PHASE1:Hg19::chr12:116200801..116200808,-#_ad475468fc4395f13e60290ec96bc3f4p@chr12:116200801..116200808, -
2.55e-98FFCP PHASE2:Hg19::chr7:75926905..75926913,-#_ad475468fc4395f13e60290ec96bc3f4p@chr7:75926905..75926913, -
2.55e-98FFCP PHASE1:Hg19::chr16:1344323..1344328,-#_ad475468fc4395f13e60290ec96bc3f4p@chr16:1344323..1344328, -
2.55e-98FFCP PHASE2:Hg19::chr9:131871258..131871269,-#_ad475468fc4395f13e60290ec96bc3f4p3@CRAT
2.55e-98FFCP PHASE2:Hg19::chr7:75927025..75927030,-#_ad475468fc4395f13e60290ec96bc3f4p@chr7:75927025..75927030, -
2.55e-98FFCP PHASE2:Hg19::chr12:116200801..116200808,-#_ad475468fc4395f13e60290ec96bc3f4p@chr12:116200801..116200808, -
2.55e-98FFCP PHASE1:Hg19::chr7:75926905..75926913,-#_ad475468fc4395f13e60290ec96bc3f4p@chr7:75926905..75926913, -
2.55e-98FFCP PHASE2:Hg19::chr16:1344323..1344328,-#_ad475468fc4395f13e60290ec96bc3f4p@chr16:1344323..1344328, -
2.55e-98FFCP PHASE1:Hg19::chr7:75927025..75927030,-#_ad475468fc4395f13e60290ec96bc3f4p@chr7:75927025..75927030, -
3.07e-86FFCP PHASE1:Mm9::chr15:101506963..101506974,+#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506963..101506974, +
3.07e-86FFCP PHASE1:Mm9::chr7:123747566..123747567,+#_560b667da5c4aa093ce842065ef8e7f6p@chr7:123747566..123747567, +
3.07e-86FFCP PHASE2:Mm9::chr11:100108943..100108977,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100108943..100108977, -
3.07e-86FFCP PHASE2:Mm9::chr11:100065595..100065616,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100065595..100065616, -
3.07e-86FFCP PHASE1:Mm9::chr18:73894503..73894506,-#_560b667da5c4aa093ce842065ef8e7f6p@chr18:73894503..73894506, -
3.07e-86FFCP PHASE1:Mm9::chr11:100107430..100107473,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100107430..100107473, -
3.07e-86FFCP PHASE1:Mm9::chr15:101522998..101523006,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101522998..101523006, -
3.07e-86FFCP PHASE1:Mm9::chr15:101506516..101506534,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506516..101506534, -
3.07e-86FFCP PHASE2:Mm9::chr15:101506878..101506897,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506878..101506897, -
3.07e-86FFCP PHASE1:Mm9::chr4:138419516..138419520,-#_560b667da5c4aa093ce842065ef8e7f6p14@Pla2g5
3.07e-86FFCP PHASE1:Mm9::chr11:100107526..100107540,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100107526..100107540, -
3.07e-86FFCP PHASE2:Mm9::chr5:86802562..86802592,-#_560b667da5c4aa093ce842065ef8e7f6p6@Tmprss11d
3.07e-86FFCP PHASE2:Mm9::chr12:89223836..89223840,+#_560b667da5c4aa093ce842065ef8e7f6p@chr12:89223836..89223840, +
3.07e-86FFCP PHASE1:Mm9::chr5:86802562..86802592,-#_560b667da5c4aa093ce842065ef8e7f6p6@Tmprss11d
3.07e-86FFCP PHASE1:Mm9::chr3:95514619..95514622,-#_560b667da5c4aa093ce842065ef8e7f6p@chr3:95514619..95514622, -
3.07e-86FFCP PHASE2:Mm9::chr15:101506963..101506974,+#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506963..101506974, +
3.07e-86FFCP PHASE2:Mm9::chr18:73894503..73894506,-#_560b667da5c4aa093ce842065ef8e7f6p@chr18:73894503..73894506, -
3.07e-86FFCP PHASE1:Mm9::chr11:100108943..100108977,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100108943..100108977, -
3.07e-86FFCP PHASE2:Mm9::chr4:138419516..138419520,-#_560b667da5c4aa093ce842065ef8e7f6p14@Pla2g5
3.07e-86FFCP PHASE1:Mm9::chr11:100065595..100065616,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100065595..100065616, -
3.07e-86FFCP PHASE2:Mm9::chr11:100107430..100107473,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100107430..100107473, -
3.07e-86FFCP PHASE2:Mm9::chr18:64859665..64859669,+#_560b667da5c4aa093ce842065ef8e7f6p@chr18:64859665..64859669, +
3.07e-86FFCP PHASE2:Mm9::chr15:101506516..101506534,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101506516..101506534, -
3.07e-86FFCP PHASE1:Mm9::chr17:27866019..27866031,-#_560b667da5c4aa093ce842065ef8e7f6p2@Spdef
3.07e-86FFCP PHASE1:Mm9::chr17:24172292..24172300,+#_560b667da5c4aa093ce842065ef8e7f6p@chr17:24172292..24172300, +
3.07e-86FFCP PHASE1:Mm9::chr15:101506878..101506897,-#_560b667da5c4aa093ce842065ef8e7f6-, p@chr15:101506878..101506897
3.07e-86FFCP PHASE2:Mm9::chr7:123747566..123747567,+#_560b667da5c4aa093ce842065ef8e7f6p@chr7:123747566..123747567, +
3.07e-86FFCP PHASE1:Mm9::chr12:89223836..89223840,+#_560b667da5c4aa093ce842065ef8e7f6p@chr12:89223836..89223840, +
3.07e-86FFCP PHASE2:Mm9::chr17:24172292..24172300,+#_560b667da5c4aa093ce842065ef8e7f6p@chr17:24172292..24172300, +
3.07e-86FFCP PHASE1:Mm9::chr18:64859665..64859669,+#_560b667da5c4aa093ce842065ef8e7f6p@chr18:64859665..64859669, +
3.07e-86FFCP PHASE2:Mm9::chr15:101522998..101523006,-#_560b667da5c4aa093ce842065ef8e7f6p@chr15:101522998..101523006, -
3.07e-86FFCP PHASE2:Mm9::chr11:100107526..100107540,-#_560b667da5c4aa093ce842065ef8e7f6p@chr11:100107526..100107540, -
3.07e-86FFCP PHASE2:Mm9::chr3:95514619..95514622,-#_560b667da5c4aa093ce842065ef8e7f6p@chr3:95514619..95514622, -
3.07e-86FFCP PHASE2:Mm9::chr17:27866019..27866031,-#_560b667da5c4aa093ce842065ef8e7f6p2@Spdef
1.23e-66FFCP PHASE1:Hg19::chr7:18126511..18126516,+#_f2adfd0f6afb98331d4d65baedb476f6p31@HDAC9
1.23e-66FFCP PHASE1:Hg19::chr19:56746179..56746184,+#_f2adfd0f6afb98331d4d65baedb476f6p@chr19:56746179..56746184, +
1.23e-66FFCP PHASE2:Hg19::chr19:56746179..56746184,+#_f2adfd0f6afb98331d4d65baedb476f6p@chr19:56746179..56746184, +
1.23e-66FFCP PHASE2:Hg19::chr7:18126511..18126516,+#_f2adfd0f6afb98331d4d65baedb476f6p31@HDAC9
2.39e-66FFCP PHASE1:Hg19::chr14:64761275..64761283,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06p14@ESR2
2.39e-66FFCP PHASE2:Hg19::chr19:49061764..49061766,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06p@chr19:49061764..49061766, -
2.39e-66FFCP PHASE2:Hg19::chr14:64761275..64761283,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06p14@ESR2
2.39e-66FFCP PHASE1:Hg19::chr19:49061764..49061766,-#_3d9fc6bd2b9aaf99be4d1e5d8b5e6f06p@chr19:49061764..49061766, -
4.66e-66FFCP PHASE1:Hg19::chr19:1021828..1021838,+#_5269c05eb55e78d824969217d9aae469p@chr19:1021828..1021838, +
4.66e-66FFCP PHASE1:Hg19::chr7:100884779..100884815,-#_5269c05eb55e78d824969217d9aae469p7@FIS1
4.66e-66FFCP PHASE2:Hg19::chr19:1021828..1021838,+#_5269c05eb55e78d824969217d9aae469p@chr19:1021828..1021838, +
4.66e-66FFCP PHASE2:Hg19::chr7:100884779..100884815,-#_5269c05eb55e78d824969217d9aae469p7@FIS1
2.42e-50FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_9276f9be3a1713c6704a3abc8a478640p@chr10:91567053..91567066, +
2.42e-50FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_9276f9be3a1713c6704a3abc8a478640p@chr10:91567075..91567084, +
2.42e-50FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_9276f9be3a1713c6704a3abc8a478640p@chr10:91567053..91567066, +
2.42e-50FFCP PHASE1:Hg19::chr21:42539377..42539381,+#_9276f9be3a1713c6704a3abc8a478640p2@MIR3197
2.42e-50FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_9276f9be3a1713c6704a3abc8a478640p@chr10:91567075..91567084, +
2.42e-50FFCP PHASE1:Hg19::chr19:55587266..55587275,+#_9276f9be3a1713c6704a3abc8a478640p8@EPS8L1
2.42e-50FFCP PHASE2:Hg19::chr21:42539377..42539381,+#_9276f9be3a1713c6704a3abc8a478640p2@MIR3197
2.42e-50FFCP PHASE2:Hg19::chr19:55587266..55587275,+#_9276f9be3a1713c6704a3abc8a478640p8@EPS8L1
3.99e-50FFCP PHASE2:Hg19::chr2:205099700..205099708,-#_e42912922140d754abfd2c0a2f5333d5p2@ENST00000419860
3.99e-50FFCP PHASE1:Hg19::chr14:102027518..102027524,-#_e42912922140d754abfd2c0a2f5333d5p@chr14:102027518..102027524, -
3.99e-50FFCP PHASE1:Hg19::chr9:139636619..139636627,+#_e42912922140d754abfd2c0a2f5333d5p@chr9:139636619..139636627, +
3.99e-50FFCP PHASE2:Hg19::chr12:48147711..48147719,+#_e42912922140d754abfd2c0a2f5333d5p19@SLC48A1
3.99e-50FFCP PHASE1:Hg19::chr12:48147711..48147719,+#_e42912922140d754abfd2c0a2f5333d5p19@SLC48A1
3.99e-50FFCP PHASE2:Hg19::chr9:139636583..139636593,+#_e42912922140d754abfd2c0a2f5333d5p@chr9:139636583..139636593, +
3.99e-50FFCP PHASE1:Hg19::chr2:205099700..205099708,-#_e42912922140d754abfd2c0a2f5333d5p2@ENST00000419860
3.99e-50FFCP PHASE2:Hg19::chr14:102027518..102027524,-#_e42912922140d754abfd2c0a2f5333d5p@chr14:102027518..102027524, -
3.99e-50FFCP PHASE1:Hg19::chr11:72350972..72350982,+#_e42912922140d754abfd2c0a2f5333d5p@chr11:72350972..72350982, +
3.99e-50FFCP PHASE2:Hg19::chr9:139636619..139636627,+#_e42912922140d754abfd2c0a2f5333d5p@chr9:139636619..139636627, +
3.99e-50FFCP PHASE1:Hg19::chr9:130440713..130440724,+#_e42912922140d754abfd2c0a2f5333d5p9@STXBP1
3.99e-50FFCP PHASE2:Hg19::chr11:72350972..72350982,+#_e42912922140d754abfd2c0a2f5333d5p@chr11:72350972..72350982, +
3.99e-50FFCP PHASE2:Hg19::chr9:130440713..130440724,+#_e42912922140d754abfd2c0a2f5333d5p9@STXBP1
3.99e-50FFCP PHASE1:Hg19::chr9:139636583..139636593,+#_e42912922140d754abfd2c0a2f5333d5p@chr9:139636583..139636593, +
6.58e-50FFCP PHASE1:Hg19::chr12:116200864..116200875,-#_506bdc2a207a52af36b807b445a16d49p@chr12:116200864..116200875, -
6.58e-50FFCP PHASE2:Hg19::chr12:116200864..116200875,-#_506bdc2a207a52af36b807b445a16d49p@chr12:116200864..116200875, -
2.74e-44FFCP PHASE2:Mm9::chr15:101520635..101520643,-#_b487af833fb3944f88fc7040865f113cp@chr15:101520635..101520643, -
2.74e-44FFCP PHASE2:Mm9::chr5:86802426..86802432,-#_b487af833fb3944f88fc7040865f113cp4@Tmprss11d
2.74e-44FFCP PHASE1:Mm9::chr15:101520939..101520945,-#_b487af833fb3944f88fc7040865f113cp@chr15:101520939..101520945, -
2.74e-44FFCP PHASE1:Mm9::chr3:120909250..120909282,-#_b487af833fb3944f88fc7040865f113cp@chr3:120909250..120909282, -
2.74e-44FFCP PHASE1:Mm9::chr5:86802426..86802432,-#_b487af833fb3944f88fc7040865f113cp4@Tmprss11d
2.74e-44FFCP PHASE2:Mm9::chr19:29939712..29939747,-#_b487af833fb3944f88fc7040865f113c-, p@chr19:29939712..29939747
2.74e-44FFCP PHASE2:Mm9::chr15:101506711..101506719,-#_b487af833fb3944f88fc7040865f113cp@chr15:101506711..101506719, -
2.74e-44FFCP PHASE1:Mm9::chr7:51011533..51011538,-#_b487af833fb3944f88fc7040865f113cp1@ENSMUST00000147618
2.74e-44FFCP PHASE2:Mm9::chr4:56445929..56445936,-#_b487af833fb3944f88fc7040865f113cp@chr4:56445929..56445936, -
2.74e-44FFCP PHASE1:Mm9::chr7:50927615..50927622,-#_b487af833fb3944f88fc7040865f113cp@chr7:50927615..50927622, -
2.74e-44FFCP PHASE2:Mm9::chr3:120909250..120909282,-#_b487af833fb3944f88fc7040865f113cp@chr3:120909250..120909282, -
2.74e-44FFCP PHASE1:Mm9::chr3:96422520..96422551,+#_b487af833fb3944f88fc7040865f113cp@chr3:96422520..96422551, +
2.74e-44FFCP PHASE2:Mm9::chr7:51011533..51011538,-#_b487af833fb3944f88fc7040865f113cp1@ENSMUST00000147618
2.74e-44FFCP PHASE1:Mm9::chr18:35502686..35502690,-#_b487af833fb3944f88fc7040865f113cp@chr18:35502686..35502690, -
2.74e-44FFCP PHASE1:Mm9::chr5:88697948..88697959,+#_b487af833fb3944f88fc7040865f113cp1@Gm7714
2.74e-44FFCP PHASE2:Mm9::chr17:14398060..14398061,+#_b487af833fb3944f88fc7040865f113cp@chr17:14398060..14398061, +
2.74e-44FFCP PHASE1:Mm9::chr17:14398060..14398061,+#_b487af833fb3944f88fc7040865f113cp@chr17:14398060..14398061, +
2.74e-44FFCP PHASE1:Mm9::chr19:29939712..29939747,-#_b487af833fb3944f88fc7040865f113cp@chr19:29939712..29939747, -
2.74e-44FFCP PHASE2:Mm9::chr3:96422520..96422551,+#_b487af833fb3944f88fc7040865f113cp@chr3:96422520..96422551, +
2.74e-44FFCP PHASE2:Mm9::chr18:35502686..35502690,-#_b487af833fb3944f88fc7040865f113cp@chr18:35502686..35502690, -