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UBERON:0001021

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Name:nerve
Namespace:FANTOM
Definition:"an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nervous_system, ZFA:0007009, ZFIN:curator]
Xrefs:
links:

AAO:0011070
AEO:0000137
BTO:0000925
EHDAA2:0003137
EHDAA:2851
EHDAA:3776
EHDAA:4657
EV:0100162
FBbt:00005105
FMA:65132
GAID:758
galen:Nerve
MA:0000217
ncithesaurus:Nerve
OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA
SCTID:256864008
TAO:0007009
XAO:0003047

ZFA:0007009
Synonyms: "neural subtree" RELATED [FMA:65132]
Comments:check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment
Alt_id: UBERON:FBbt_00005099-FMA_5914
UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000122(neuron projection bundle)
part_of:UBERON:0000010(peripheral nervous system)



Children

is a:UBERON:0001785 (cranial nerve),UBERON:0002003 (peripheral nerve),UBERON:0004904 (nerve connecting eye with brain)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001021 (nerve), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_d0b545b5131017920ff8b5c7c4fff5e4p@chr12:57628762..57628773, -
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_d0b545b5131017920ff8b5c7c4fff5e4p@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_d3a833bbac083d29f403c01eb3a10c7b-, p@chr7:15056365..15056368
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_d3a833bbac083d29f403c01eb3a10c7b-, p@chr18:25161980..25161984
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_d3a833bbac083d29f403c01eb3a10c7b-, p@chr2:60133192..60133194
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr4:127394496..127394500, -
2.55e-98FFCP PHASE1:Hg19::chr7:95704857..95704906,+#_5f828c8a1ebb642a109db98d40eb5b79+, p@chr7:95704857..95704906
2.55e-98FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr21:45724075..45724081, +
2.55e-98FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:86911063..86911068, +
2.55e-98FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:103200303..103200307, +
2.55e-98FFCP PHASE2:Hg19::chr14:37227792..37227796,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:37227792..37227796, -
2.55e-98FFCP PHASE2:Hg19::chr1:44991346..44991355,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:44991346..44991355, +
2.55e-98FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_5f828c8a1ebb642a109db98d40eb5b79+, p@chr6:121951983..121951986
2.55e-98FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE2:Hg19::chr17:12935401..12935405,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr17:12935401..12935405, -
2.55e-98FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:44991346..44991355, +
2.55e-98FFCP PHASE2:Hg19::chr3:163246025..163246029,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:163246025..163246029, +
2.55e-98FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_5f828c8a1ebb642a109db98d40eb5b79p10@NELL1
2.55e-98FFCP PHASE2:Hg19::chr4:130221053..130221071,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE1:Hg19::chr19:20382476..20382481,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr19:20382476..20382481, -
2.55e-98FFCP PHASE1:Hg19::chr5:54763740..54763746,-#_5f828c8a1ebb642a109db98d40eb5b79p10@PPAP2A
2.55e-98FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_5f828c8a1ebb642a109db98d40eb5b79p2@ATAD3B
2.55e-98FFCP PHASE1:Hg19::chr4:188536760..188536764,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:188536760..188536764, -
2.55e-98FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE1:Hg19::chr9:79519652..79519664,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:79519652..79519664, -
2.55e-98FFCP PHASE2:Hg19::chr14:68527802..68527806,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:68527802..68527806, +
2.55e-98FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_5f828c8a1ebb642a109db98d40eb5b79p3@ENST00000558781
2.55e-98FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr18:39859562..39859566, +
2.55e-98FFCP PHASE1:Hg19::chr11:20791058..20791067,+#_5f828c8a1ebb642a109db98d40eb5b79p10@NELL1
2.55e-98FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_5f828c8a1ebb642a109db98d40eb5b79p22@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE1:Hg19::chr6:16317123..16317126,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr6:16317123..16317126, +
2.55e-98FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr16:55740953..55740956, +
2.55e-98FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_5f828c8a1ebb642a109db98d40eb5b79p12@C16orf62
2.55e-98FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE2:Hg19::chr2:171939999..171940009,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:171939999..171940009, -
2.55e-98FFCP PHASE2:Hg19::chr12:68567714..68567717,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr12:68567714..68567717, +
2.55e-98FFCP PHASE2:Hg19::chr18:61506836..61506840,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr18:61506836..61506840, +
2.55e-98FFCP PHASE2:Hg19::chr11:57030314..57030346,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:57030314..57030346, +
2.55e-98FFCP PHASE1:Hg19::chr11:57030314..57030346,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:57030314..57030346, +
2.55e-98FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr7:77789390..77789399, -
2.55e-98FFCP PHASE2:Hg19::chr17:47107522..47107524,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE1:Hg19::chr5:33229308..33229311,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:33229308..33229311, -
2.55e-98FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_5f828c8a1ebb642a109db98d40eb5b79p10@ALK
2.55e-98FFCP PHASE2:Hg19::chr7:103086717..103086724,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr7:103086717..103086724, +
2.55e-98FFCP PHASE2:Hg19::chr19:48479835..48479841,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr19:48479835..48479841, -
2.55e-98FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:111570472..111570478, -
2.55e-98FFCP PHASE2:Hg19::chr16:66170755..66170759,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr16:66170755..66170759, -
2.55e-98FFCP PHASE2:Hg19::chr1:203036812..203036840,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:203036812..203036840, +
2.55e-98FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:172318159..172318160, +
2.55e-98FFCP PHASE1:Hg19::chr17:47107522..47107524,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr17:47107522..47107524, +
2.55e-98FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE2:Hg19::chr2:29645795..29645797,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:29645795..29645797, +
2.55e-98FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_5f828c8a1ebb642a109db98d40eb5b79p59@ANK3
2.55e-98FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_5f828c8a1ebb642a109db98d40eb5b79p18@TGFB3
2.55e-98FFCP PHASE2:Hg19::chr1:1361494..1361497,+#_5f828c8a1ebb642a109db98d40eb5b79p7@TMEM88B
2.55e-98FFCP PHASE2:Hg19::chr4:139501766..139501798,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:139501766..139501798, -
2.55e-98FFCP PHASE1:Hg19::chr3:131712314..131712315,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:131712314..131712315, -
2.55e-98FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_5f828c8a1ebb642a109db98d40eb5b79p10@ALK
2.55e-98FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:29484252..29484254, -
2.55e-98FFCP PHASE2:Hg19::chr5:24554148..24554153,+#_5f828c8a1ebb642a109db98d40eb5b79p1@ENST00000510391
2.55e-98FFCP PHASE2:Hg19::chr12:59444098..59444102,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr12:59444098..59444102, +
2.55e-98FFCP PHASE2:Hg19::chr12:296753..296755,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr12:296753..296755, -
2.55e-98FFCP PHASE1:Hg19::chr10:22768515..22768517,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr10:22768515..22768517, +
2.55e-98FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:22000519..22000525, -
2.55e-98FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_5f828c8a1ebb642a109db98d40eb5b79+, p@chr18:39859562..39859566
2.55e-98FFCP PHASE1:Hg19::chr3:181328472..181328478,+#_5f828c8a1ebb642a109db98d40eb5b79p25@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr8:130597061..130597068,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:130597061..130597068, +
2.55e-98FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr21:45724075..45724081, +
2.55e-98FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr19:48479835..48479841, -
2.55e-98FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr19:35978717..35978722, -
2.55e-98FFCP PHASE1:Hg19::chr12:296753..296755,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr12:296753..296755, -
2.55e-98FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_5f828c8a1ebb642a109db98d40eb5b79p4@SNORD111B
2.55e-98FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:13992334..13992338, -
2.55e-98FFCP PHASE2:Hg19::chr5:103200303..103200307,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:103200303..103200307, +
2.55e-98FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_5f828c8a1ebb642a109db98d40eb5b79p59@ANK3
2.55e-98FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE2:Hg19::chr3:77060783..77060789,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:77060783..77060789, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "A portion of tissue which is a fasiculated group of axons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.