Personal tools

UBERON:0001130

From FANTOM5_SSTAR

Jump to: navigation, search

Name:vertebral column
Namespace:FANTOM
Definition:"Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body." [https://sourceforge.net/tracker/?func
Xrefs:
links:

AAO:0000699
AAO:0000734
BTO:0000818
EFO:0001369
EHDA:10119
EMAPA:16666
FMA:13478
GAID:106
galen:SpinalColumn
MA:0002416
MESH:A.02.835.232.834
ncithesaurus:Spinal_Cord_Column
ncithesaurus:Vertebral_Column
NIF_Subcellular:sao1145756102
OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA
OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA
SCTID:44300000
TAO:0001559
VHOG:0001142
VSAO:0000185
XAO:0003074

ZFA:0001559
Synonyms: "backbone" NARROW [FMA:13478]
"columna vertebralis" RELATED [BTO:0000818]
"spinal column" RELATED [MESH:A.02.835.232.834]
"spine" BROAD [FMA:13478]
"vertebral column skeleton" NARROW [AAO:0000699]
Comments:Editor notes: Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton
Alt_id: UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0011138(post-cranial axial skeletal system)



Children

part of:UBERON:0001468 (intervertebral joint),UBERON:0002412 (vertebra),UBERON:0010913 (vertebral element),UBERON:0011094 (vertebra cartilage element),UBERON:0011095 (vertebra pre-cartilage condensation),UBERON:0015005 (vertebra endochondral element)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001130 (vertebral column), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_064f8942c8d518be2d7e1aa05ba7dde6p@chr3:174737010..174737023, +
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_064f8942c8d518be2d7e1aa05ba7dde6p@chr3:174737010..174737023, +
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_35572683d3260e5e76fcf2643420fe90p4@PAX1
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_35572683d3260e5e76fcf2643420fe90p4@PAX1
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_caee173b3d911537b9c3f1175e869476p@chr5:30104176..30104187, -
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_caee173b3d911537b9c3f1175e869476p@chr5:30104176..30104187, -
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_1eec87cddf1a27370abd1044e5f42979p4@NKX3-2
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_1eec87cddf1a27370abd1044e5f42979p4@NKX3-2
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_be6ad71e01cf3cb7640e17d4c841bf76p@chr9:114135497..114135526, -
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_be6ad71e01cf3cb7640e17d4c841bf76p@chr9:114135497..114135526, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_84ac457b9863252ccb3ed92d596842d3p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_84ac457b9863252ccb3ed92d596842d3p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_3227e32b1653790ce02a24830d874a07p@chr3:80727046..80727051, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_3227e32b1653790ce02a24830d874a07p@chr3:80727046..80727051, -
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_661ebfea7bfcc412bb6636a613b3d4dbp15@SNED1
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_661ebfea7bfcc412bb6636a613b3d4dbp15@SNED1
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_eadbd0d9c7e97252fb06c29825383587p20@CAPZB
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_eadbd0d9c7e97252fb06c29825383587p20@CAPZB
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_7e1ecec5701489e1c3c3f0015ecaa53f-, p@chr1:19778678..19778689
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_7e1ecec5701489e1c3c3f0015ecaa53fp@chr1:19778678..19778689, -
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_65b4eecbc31f1d6234b8b3920d206fd5p@chr2:241897189..241897221, -
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_65b4eecbc31f1d6234b8b3920d206fd5p@chr2:241897189..241897221, -
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_ad752c05861540ef1988b1852853aeb6p1@uc010aki.1
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_ad752c05861540ef1988b1852853aeb6p1@uc010aki.1
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_c246049be491788542845103acfc675ep6@SIX4
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_c246049be491788542845103acfc675ep6@SIX4
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_507cf5ec7703e69e8f69fcb1ac3edd45p3@uc010aki.1
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_507cf5ec7703e69e8f69fcb1ac3edd45p3@uc010aki.1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_1c7c681852de2671847350a0bbd0844bp3@PAX1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_1c7c681852de2671847350a0bbd0844bp3@PAX1
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_635dc743d1c93e4b5aed819ac97aeca4p@chr10:81923378..81923389, -
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_635dc743d1c93e4b5aed819ac97aeca4p@chr10:81923378..81923389, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_b53efd6dcf762201cccf54c5e3c24110p@chr2:12248310..12248334, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_b53efd6dcf762201cccf54c5e3c24110p@chr2:12248310..12248334, -
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_913887ee090bd83e430695e4f9ae7556p19@HDAC9
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_913887ee090bd83e430695e4f9ae7556p19@HDAC9
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_3354b5c7dc83a002093eab52f99e640ep@chr7:158224707..158224729, -
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_3354b5c7dc83a002093eab52f99e640e-, p@chr7:158224707..158224729
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_5dd9b3d721f7596d01b8c900ef070f7e+, p@chr1:65888177..65888194
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_5dd9b3d721f7596d01b8c900ef070f7ep@chr1:65888177..65888194, +
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_b0ab89a934a2f0fadab049b66ab87642p3@NKX3-2
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_b0ab89a934a2f0fadab049b66ab87642p3@NKX3-2
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_3da5f3a6ebb74b1a32776ccedb60d137p1@MGC27382
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_3da5f3a6ebb74b1a32776ccedb60d137p1@MGC27382
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_74e99504b944474bd068a6b37d7347c0p18@HDAC9
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_74e99504b944474bd068a6b37d7347c0p18@HDAC9
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_4529454966f8b2262dd1ab4c480c83fap@chr9:33028063..33028067, -
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_4529454966f8b2262dd1ab4c480c83fap@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_4529454966f8b2262dd1ab4c480c83fa-, p@chr9:33028063..33028067
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_4529454966f8b2262dd1ab4c480c83fap@chr13:24914614..24914622, -
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_00857bc2ac7a1ff8a42a97a75cd9eaa0p1@PAX1
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_00857bc2ac7a1ff8a42a97a75cd9eaa0p1@PAX1
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_d19065103c6641805c1f98becbb5ad9ep5@PTGFR
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_d19065103c6641805c1f98becbb5ad9ep5@PTGFR
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_025b7c41ad51a94f29e84b44b25b7f79p@chr2:241897363..241897398, +
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_025b7c41ad51a94f29e84b44b25b7f79p@chr2:241897363..241897398, +
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_1c3507a01750a630d392b7e1c7e3892ap2@PAX1
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_1c3507a01750a630d392b7e1c7e3892ap2@PAX1
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_69ccdeb9e893850fddcee4e082bb75ddp16@HDAC9
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_69ccdeb9e893850fddcee4e082bb75ddp16@HDAC9
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_69ccdeb9e893850fddcee4e082bb75ddp@chr5:140887761..140887777, +
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_69ccdeb9e893850fddcee4e082bb75ddp@chr5:140887761..140887777, +
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_3637856b1cf72d4938e47cdbb18761f0p4@NUP54
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_3637856b1cf72d4938e47cdbb18761f0p4@NUP54
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_3bc61b66ccb84223a0407212c3abb86ep@chr2:241938405..241938416, +
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_3bc61b66ccb84223a0407212c3abb86ep@chr2:241938405..241938416, +
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_9a2cfb4245b46f146625c16a1b032a65p1@NKX3-2
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_9a2cfb4245b46f146625c16a1b032a65p1@NKX3-2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_12317a54f4b535c27cf3a9ba75044e01p10@SYNJ2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_12317a54f4b535c27cf3a9ba75044e01p10@SYNJ2
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_a1db76c06fc96d5930ec6d4678fbd41cp@chr9:16138889..16138902, -
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_a1db76c06fc96d5930ec6d4678fbd41cp@chr9:16138889..16138902, -
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_72d4267c606ee356433bc0e98b34de13p2@ENST00000518706
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_72d4267c606ee356433bc0e98b34de13p2@ENST00000518706
2.96e-37FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_8ff60ac03bd3654405d85872ecc3d775p1@ENST00000436845
2.96e-37FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_8ff60ac03bd3654405d85872ecc3d775p1@ENST00000436845
6.92e-37FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_d0f5d7b414472c75521c3d4b4b0f2dc1p12@CDK5RAP2
6.92e-37FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_d0f5d7b414472c75521c3d4b4b0f2dc1p12@CDK5RAP2
3.28e-36FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_8485234a4dfc90a5bd441a6c18d63b48p1@ENST00000413519
3.28e-36FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_8485234a4dfc90a5bd441a6c18d63b48p1@ENST00000413519
9.62e-35FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_809c1c9946ba1b06fbb27fba356212ebp4@PAX9
9.62e-35FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_809c1c9946ba1b06fbb27fba356212ebp4@PAX9
1.8e-34FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_2d31feb1df87f3077589543ad87ec909p@chr7:100202784..100202796, -
1.8e-34FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_2d31feb1df87f3077589543ad87ec909p@chr7:100202784..100202796, -
3.69e-34FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_c34e8a5cc94493bffacfe3597dde5c6fp8@HOXC6
3.69e-34FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_c34e8a5cc94493bffacfe3597dde5c6fp8@HOXC6
5.52e-34FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_9f911177112e0b7b0ae7f13f3bcce1c3p6@CCDC86
5.52e-34FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_9f911177112e0b7b0ae7f13f3bcce1c3p6@CCDC86
1.43e-33FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_a55bc64bf561b8874941c7b07e923764p@chr20:21695435..21695452, +
1.43e-33FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_a55bc64bf561b8874941c7b07e923764p@chr20:21695435..21695452, +
5.36e-33FFCP PHASE2:Hg19::chr16:70795228..70795237,+#_3b8490589706574bfc67723df156b900p@chr16:70795228..70795237, +
5.36e-33FFCP PHASE1:Hg19::chr16:70795228..70795237,+#_3b8490589706574bfc67723df156b900p@chr16:70795228..70795237, +
1.05e-32FFCP PHASE1:Hg19::chr3:158384350..158384362,-#_4bb71a50685ec7e087e3c141bda1fa7ap@chr3:158384350..158384362, -
1.05e-32FFCP PHASE2:Hg19::chr3:158384350..158384362,-#_4bb71a50685ec7e087e3c141bda1fa7ap@chr3:158384350..158384362, -
1.7e-32FFCP PHASE1:Hg19::chr2:158345440..158345449,-#_8abdb36bfff835f146d50b1edc91727ap9@CYTIP
1.7e-32FFCP PHASE2:Hg19::chr2:158345440..158345449,-#_8abdb36bfff835f146d50b1edc91727ap9@CYTIP
2.34e-32FFCP PHASE2:Hg19::chr18:12012068..12012098,+#_dc4b73bf0183f38abc1fcfcb4480eddbp@chr18:12012068..12012098, +
2.34e-32FFCP PHASE1:Hg19::chr18:12012068..12012098,+#_dc4b73bf0183f38abc1fcfcb4480eddbp@chr18:12012068..12012098, +
2.79e-31FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_65d7c99a4b1bc94a2c1ca995798351e7p1@ENST00000555639
2.79e-31FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_65d7c99a4b1bc94a2c1ca995798351e7p1@ENST00000555639










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the vertebra in the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.