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UBERON:0001134

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Name:skeletal muscle tissue
Namespace:FANTOM
Definition:"Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]. Striated muscle tissue under control of the somatic nervous system. It is one of three major muscle types, the others being cardiac and smooth muscle. As its name suggests, most skeletal muscle is attached to bones by bundles of collagen fibers known as tendons. Skeletal muscle is made up of individual components known as muscle fibers. These fibers are formed from the fusion of developmental myoblasts. The myofibers are long, cylindrical, multinucleated cells composed of actin and myosin myofibrils repeated as a sarcomere, the basic functional unit of the cell and responsible for skeletal muscle's striated appearance and forming the basic machinery necessary for muscle contraction. The term muscle refers to multiple bundles of muscle fibers held together by connective tissue[WP]." [Wikipedia:Skeletal_striated_muscle]
Xrefs:
links:

AAO:0011099
BTO:0001103
EFO:0000888
EHDAA2:0001842
EHDAA:2923
EHDAA:5035
EHDAA:5043
EHDAA:5978
EHDAA:5984
EHDAA:8277
EHDAA:8291
EHDAA:8326
EHDAA:9146
EV:0100377
FMA:14069
GAID:141
[1]
MA:0002439
MAT:0000302
MESH:A.02.633.567
MIAA:0000302
ncithesaurus:Skeletal_Muscle_Tissue
OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
SCTID:426215008
TAO:0005277
VHOG:0000319
XAO:0000174

ZFA:0005277
Synonyms: "skeletal muscle" EXACT []
"skeletal muscle organ" RELATED []
"skeletal muscle system" RELATED [BTO:0001103]
"somatic muscle" RELATED [BTO:0001103]
Comments:TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Consider FBbt:00005073 - somatic muscle.
Alt_id: UBERON:FMA_14069-MA_0002439
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002036(striated muscle tissue)
develops_from:UBERON:0003082(myotome)
part_of:UBERON:0014892(skeletal muscle organ)



Children

is a:UBERON:0003269 (skeletal muscle tissue of eye),UBERON:0003897 (axial muscle),UBERON:0003898 (skeletal muscle of trunk),UBERON:0003899 (skeletal muscle of head),UBERON:0004830 (respiratory system skeletal muscle),UBERON:0010084 (future diaphragm)
derives from:FF:0010023 (human skeletal muscle - adult sample),FF:0010066 (human skeletal muscle - fetal sample)
part of:CL:0000188 (cell of skeletal muscle),CL:0000355 (multi-potent skeletal muscle stem cell),CL:0000515 (skeletal muscle myoblast),CL:0000594 (skeletal muscle satellite cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001134 (skeletal muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_9343bcb99a9cae921225cd400ef69debp@chrX:160838683..160838694, +
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_9343bcb99a9cae921225cd400ef69debp@chrX:160838683..160838694, +
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_fd0c99777af586859a82fd64ac9c6dfdp@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_fd0c99777af586859a82fd64ac9c6dfdp@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_fd0c99777af586859a82fd64ac9c6dfdp@chr12:105433069..105433075, -
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_fd0c99777af586859a82fd64ac9c6dfdp@chrX:65748600..65748616, +
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_eabc12d12658d55568341a3d85f8d620p@chrX:160838787..160838800, +
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_eabc12d12658d55568341a3d85f8d620p@chrX:160838787..160838800, +
3.13e-47FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_2953d2d974d6d404bef01b48b33391f6p@chr6:53359400..53359406, +
3.13e-47FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_2953d2d974d6d404bef01b48b33391f6p@chr6:53359400..53359406, +
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_7abcb8a26433a15386b787d09c08b409p@chr11:81849982..81850000, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_7abcb8a26433a15386b787d09c08b409p@chr11:81849982..81850000, +
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_16a46cf00ad02297c708d8e41ed6ccc9p@chr17:14813242..14813246, -
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_16a46cf00ad02297c708d8e41ed6ccc9p@chr17:14813242..14813246, -
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_fc8e4e08fc553fd4cc8816c352e72946p4@Gpr39
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_fc8e4e08fc553fd4cc8816c352e72946p4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_ea6bc60e4d808dd4011bf152d89912bdp@chrX:160840025..160840037, +
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_ea6bc60e4d808dd4011bf152d89912bdp@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_ea6bc60e4d808dd4011bf152d89912bdp@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_ea6bc60e4d808dd4011bf152d89912bdp@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_ea6bc60e4d808dd4011bf152d89912bdp@chrX:160840048..160840057, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_ea6bc60e4d808dd4011bf152d89912bdp@chrX:160840048..160840057, +
4.61e-38FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_f5eeab4d9fa21d38606e83649880664dp2@LRRC17
4.61e-38FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_f5eeab4d9fa21d38606e83649880664dp2@LRRC17
6.16e-37FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_e5f67863ce29749faa0d050700fbf79ep8@ARHGAP22
6.16e-37FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_e5f67863ce29749faa0d050700fbf79ep8@ARHGAP22
7.01e-37FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_2a231697b783232b6bc24fa0eac066afp@chr9:35685631..35685657, +
7.01e-37FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_2a231697b783232b6bc24fa0eac066afp@chr9:35685631..35685657, +
9.63e-36FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_808092eb4a9b6763366acdc1326a890cp4@ARHGAP22
9.63e-36FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_808092eb4a9b6763366acdc1326a890cp4@ARHGAP22
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_0b2f88fbd604eaa4c2736e4898cde60cp11@Fam198b
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_0b2f88fbd604eaa4c2736e4898cde60cp11@Fam198b
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_2742fb45a812182d1f43c0f324361c2cp@chr1:127574253..127574264, +
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_2742fb45a812182d1f43c0f324361c2cp@chr1:127574253..127574264, +
4.0e-35FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_392024d4cb46caa408b5749598c379ffp1@LRRC17
4.0e-35FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_392024d4cb46caa408b5749598c379ffp1@LRRC17
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_f6dd166a5b2d04bd1295a34d50ee3a26p7@Gpr39
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_f6dd166a5b2d04bd1295a34d50ee3a26p7@Gpr39
5.48e-35FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_10826d0cb3638bb033f16486813eee33p@chr11:102661517..102661541, -
5.48e-35FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_10826d0cb3638bb033f16486813eee33p@chr11:102661517..102661541, -
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_d81004b65bf4a168d08129f406632944p11@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_d81004b65bf4a168d08129f406632944p11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_eda6b91580b30bc2e6789549b7fcdbf2p@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_eda6b91580b30bc2e6789549b7fcdbf2p@chrX:160839768..160839780, +
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_8e345afdc3fd371245e154a3b32ff98cp8@Gpr39
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_8e345afdc3fd371245e154a3b32ff98cp8@Gpr39
1.83e-34FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_26935565829536d044d4a3e3c923bf09p@chr4:74703497..74703511, +
1.83e-34FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_26935565829536d044d4a3e3c923bf09p@chr4:74703497..74703511, +
5.92e-34FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_f2fe42dae7426d1fb4430d9b28a2e5b5p@chr4:7846444..7846449, -
5.92e-34FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_f2fe42dae7426d1fb4430d9b28a2e5b5p@chr4:7846444..7846449, -
2.08e-33FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_713fd6ea186ce3e8541be59edaf30e3dp3@LRRC17
2.08e-33FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_713fd6ea186ce3e8541be59edaf30e3dp3@LRRC17
1.42e-32FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_7f5a46600178ed9e70b2e16c84126c8ep2@CXCL6
1.42e-32FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_7f5a46600178ed9e70b2e16c84126c8ep2@CXCL6
1.85e-32FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_ec5d595e7ab4b23807e5496f91678f8dp@chr9:35689148..35689192, +
1.85e-32FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_ec5d595e7ab4b23807e5496f91678f8dp@chr9:35689148..35689192, +
2.15e-32FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_ce3387d9c993ab37c8b8ac990b2eba05p2@SASH1
2.15e-32FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_ce3387d9c993ab37c8b8ac990b2eba05p2@SASH1
2.89e-32FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_953905984e830de7ca372a42d7bebd62p@chr4:169059590..169059615, +
2.89e-32FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_953905984e830de7ca372a42d7bebd62p@chr4:169059590..169059615, +
3.77e-32FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_0d0976d706f02bf4f5c8e2a1b750b244p@chr2:134548872..134548879, -
3.77e-32FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_0d0976d706f02bf4f5c8e2a1b750b244p@chr2:134548872..134548879, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_7764fdbdf84c60e1dc814a8ebbcd660fp@chr7:96658543..96658553, -
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_7764fdbdf84c60e1dc814a8ebbcd660fp@chr7:96658543..96658553, -
4.14e-32FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_09bad2344c763485dd65129731cdfe82p3@IFI27L2
4.14e-32FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_09bad2344c763485dd65129731cdfe82p3@IFI27L2
4.65e-32FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_0bd9f185d5f1322b9bf4ec094bc8b7dfp@chr9:35684475..35684520, +
4.65e-32FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_0bd9f185d5f1322b9bf4ec094bc8b7dfp@chr9:35684475..35684520, +
8.06e-32FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_995bd8f5ca9e926351047f5226252013p1@CU675118
8.06e-32FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_995bd8f5ca9e926351047f5226252013p1@CU675118
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_5de20c835d5ccf18e56e540bf7b06537p2@Il6
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_5de20c835d5ccf18e56e540bf7b06537p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_5de20c835d5ccf18e56e540bf7b06537p2@Il6
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_5de20c835d5ccf18e56e540bf7b06537p@chr7:91081998..91082010, -
1.52e-31FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_6caa8d6924a727acea2ff68d23f81ed4p@chr9:35685445..35685517, +
1.52e-31FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_6caa8d6924a727acea2ff68d23f81ed4p@chr9:35685445..35685517, +
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_1cb960300de671bce5087e3a87d1d63ap@chr10:67598037..67598049, -
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_1cb960300de671bce5087e3a87d1d63ap@chr10:67598037..67598049, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_4f2553f12222ef4a345bfe3d423f105fp@chr2:65009852..65009866, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_4f2553f12222ef4a345bfe3d423f105fp@chr2:65009852..65009866, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_7e66f312357ee9a93512de034548aa12p@chr18:52678391..52678395, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_7e66f312357ee9a93512de034548aa12p@chr18:52678391..52678395, -
3.27e-31FFCP PHASE1:Hg19::chr9:118916063..118916077,+#_40b546e18c73348d271d096d6370040ap2@PAPPA
3.27e-31FFCP PHASE2:Hg19::chr9:118916063..118916077,+#_40b546e18c73348d271d096d6370040ap2@PAPPA
4.08e-31FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_b7f1a53a1dc3483c948a2d809189f6f1p3@CXCL6
4.08e-31FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_b7f1a53a1dc3483c948a2d809189f6f1p3@CXCL6
6.01e-31FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_46291eabdf414a236c56645ac53e91c8p2@RCN3
6.01e-31FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_46291eabdf414a236c56645ac53e91c8p2@RCN3
7.63e-31FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_ccbf70d3e53308ae3920ccd45e07ae19p2@ELTD1
7.63e-31FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_ccbf70d3e53308ae3920ccd45e07ae19p2@ELTD1
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_5c7c19a2ec112b7aa7fdb8be250af581p@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_5c7c19a2ec112b7aa7fdb8be250af581p@chr6:91222095..91222107, +
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_f14dead624c0f5f069006e616d8a5a58p9@Kctd10
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_f14dead624c0f5f069006e616d8a5a58p9@Kctd10
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_d4828416efa075afbe164b99f4274c56p6@Gpr39
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_d4828416efa075afbe164b99f4274c56p6@Gpr39
1.35e-30FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_245f8f099e9cf280b3b0ef20f56a728bp@chr4:74703963..74703975, +
1.35e-30FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_245f8f099e9cf280b3b0ef20f56a728bp@chr4:74703963..74703975, +
4.78e-30FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_a7e4e2956f6e1db957fbd340135a3037p1@BDKRB1
4.78e-30FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_a7e4e2956f6e1db957fbd340135a3037p1@BDKRB1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.