Personal tools

UBERON:0001153

From FANTOM5_SSTAR

Jump to: navigation, search

Name:caecum
Namespace:FANTOM
Definition:"Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum]
Xrefs:
links:

BTO:0000166
EFO:0000850
EHDAA2:0000206
EHDAA:3913
EV:0100397
FMA:14541
GAID:307
galen:Cecum
[1]
[ 200px-Stomach_colon_rectum_diagram.svg.png 200px-Stomach_colon_rectum_diagram.svg.png]
MA:0000334
MESH:A.03.492.411.495.209
MIAA:0000288
ncithesaurus:Cecum
OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA
SCTID:181256004

VHOG:0001559
Synonyms: "blind intestine" RELATED [BTO:0000166]
"blindgut" RELATED [BTO:0000166]
"cecum" EXACT [FMA:14541]
"intestinum caecum" RELATED [BTO:0000166]
"intestinum crassum caecum" EXACT []
"intestinum crassum cecum" RELATED [BTO:0000166]
Comments:A cecum is present in most amniote species, and also in lungfish, but not in any living species of amphibian. In reptiles, it is usually a single median structure, arising from the dorsal side of the large intestine. Birds typically have two paired ceca, as, unlike other mammals, do hyraxes. Most mammalian herbivores have a relatively large cecum, hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose; in many species, it is considerably wider than the colon. In contrast, obligatory carnivores, whose diets contain little or no plant material, have a reduced cecum, which is often partially or wholly replaced by the vermiform appendix. Many fish have a number of small outpocketings, called pyloric ceca, along their intestine; despite the name they are not homologous with the cecum of amniotes, and their purpose is to increase the overall area of the digestive epithelium.[2] Some invertebrates, such as squid,[3] may also have structures with the same name, but these have no relationship with those of vertebrates.[WP]
Alt_id: UBERON:FMA_14541-MA_0000334-MIAA_0000288
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0009854(digestive tract diverticulum)
develops_from:UBERON:0001045(midgut)
part_of:UBERON:0000059(large intestine),UBERON:0001155(colon)



Children

derives from:FF:0011324 (mouse cecum - adult sample)
part of:UBERON:0001154 (vermiform appendix)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001153 (caecum), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_fb436280eb7e6b5290795eaf6cc8e6d7p30@RPRD1B
9.37e-99FFCP PHASE2:Hg19::chr3:164875937..164875960,-#_fb436280eb7e6b5290795eaf6cc8e6d7p1@ENST00000472120
9.37e-99FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_fb436280eb7e6b5290795eaf6cc8e6d7p30@RPRD1B
9.37e-99FFCP PHASE1:Hg19::chr16:23489788..23489792,-#_fb436280eb7e6b5290795eaf6cc8e6d7p@chr16:23489788..23489792, -
9.37e-99FFCP PHASE2:Hg19::chr16:23489788..23489792,-#_fb436280eb7e6b5290795eaf6cc8e6d7p@chr16:23489788..23489792, -
9.37e-99FFCP PHASE1:Hg19::chr3:164875937..164875960,-#_fb436280eb7e6b5290795eaf6cc8e6d7p1@ENST00000472120
2.55e-98FFCP PHASE1:Hg19::chr5:78065820..78065833,-#_186502d25cb5f1b1cd2ed3f6e81f619cp27@LHFPL2
2.55e-98FFCP PHASE1:Hg19::chr14:106090812..106090849,-#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr14:106090812..106090849, -
2.55e-98FFCP PHASE2:Hg19::chr1:204247050..204247059,-#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr1:204247050..204247059, -
2.55e-98FFCP PHASE1:Hg19::chr2:6919697..6919713,-#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr2:6919697..6919713, -
2.55e-98FFCP PHASE2:Hg19::chr9:37384457..37384469,-#_186502d25cb5f1b1cd2ed3f6e81f619cp1@ENST00000452923
2.55e-98FFCP PHASE2:Hg19::chr14:106090812..106090849,-#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr14:106090812..106090849, -
2.55e-98FFCP PHASE2:Hg19::chr5:78065820..78065833,-#_186502d25cb5f1b1cd2ed3f6e81f619cp27@LHFPL2
2.55e-98FFCP PHASE1:Hg19::chr14:106091272..106091292,-#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr14:106091272..106091292, -
2.55e-98FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr7:25361115..25361117, +
2.55e-98FFCP PHASE1:Hg19::chr9:37384457..37384469,-#_186502d25cb5f1b1cd2ed3f6e81f619cp1@ENST00000452923
2.55e-98FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr7:25361115..25361117, +
2.55e-98FFCP PHASE2:Hg19::chr14:106091272..106091292,-#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr14:106091272..106091292, -
2.55e-98FFCP PHASE1:Hg19::chr1:204247050..204247059,-#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr1:204247050..204247059, -
2.55e-98FFCP PHASE2:Hg19::chr8:23282797..23282803,-#_186502d25cb5f1b1cd2ed3f6e81f619cp37@LOXL2
2.55e-98FFCP PHASE1:Hg19::chr8:23282797..23282803,-#_186502d25cb5f1b1cd2ed3f6e81f619cp37@LOXL2
2.55e-98FFCP PHASE2:Hg19::chr2:6919697..6919713,-#_186502d25cb5f1b1cd2ed3f6e81f619cp@chr2:6919697..6919713, -
2.55e-98FFCP PHASE1:Hg19::chr19:42190911..42190925,-#_186502d25cb5f1b1cd2ed3f6e81f619c-, p@chr19:42190911..42190925
2.55e-98FFCP PHASE2:Hg19::chr19:42190911..42190925,-#_186502d25cb5f1b1cd2ed3f6e81f619c-, p@chr19:42190911..42190925
3.07e-86FFCP PHASE2:Mm9::chr18:44716456..44716461,+#_3db07350bb75d52adeb0c56a6fad72f1p@chr18:44716456..44716461, +
3.07e-86FFCP PHASE2:Mm9::chr14:93595014..93595015,-#_3db07350bb75d52adeb0c56a6fad72f1p@chr14:93595014..93595015, -
3.07e-86FFCP PHASE2:Mm9::chr4:82849680..82849681,-#_3db07350bb75d52adeb0c56a6fad72f1p@chr4:82849680..82849681, -
3.07e-86FFCP PHASE1:Mm9::chr18:44716456..44716461,+#_3db07350bb75d52adeb0c56a6fad72f1p@chr18:44716456..44716461, +
3.07e-86FFCP PHASE1:Mm9::chr14:93595014..93595015,-#_3db07350bb75d52adeb0c56a6fad72f1p@chr14:93595014..93595015, -
3.07e-86FFCP PHASE1:Mm9::chr4:82849680..82849681,-#_3db07350bb75d52adeb0c56a6fad72f1p@chr4:82849680..82849681, -
1.23e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_e0e20d62ab50d9c3a81ec6179be2e631p43@LPP
1.23e-66FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_e0e20d62ab50d9c3a81ec6179be2e631p58@LPP
1.23e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_e0e20d62ab50d9c3a81ec6179be2e631p43@LPP
1.23e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_e0e20d62ab50d9c3a81ec6179be2e631p58@LPP
2.39e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_44f0c4a100f6abe23da3b450441052eap2@FCRL4
2.39e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_44f0c4a100f6abe23da3b450441052eap@chr16:69418649..69418659, -
2.39e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_44f0c4a100f6abe23da3b450441052eap2@FCRL4
2.39e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_44f0c4a100f6abe23da3b450441052eap@chr16:69418649..69418659, -
4.66e-66FFCP PHASE1:Hg19::chr4:146980425..146980439,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr4:146980425..146980439, -
4.66e-66FFCP PHASE1:Hg19::chr14:75906948..75906962,+#_b2e34ef963fe50e9615141fe0877d1e9p@chr14:75906948..75906962, +
4.66e-66FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr1:38201159..38201166, -
4.66e-66FFCP PHASE2:Hg19::chr2:109392190..109392199,+#_b2e34ef963fe50e9615141fe0877d1e9p14@RANBP2
4.66e-66FFCP PHASE2:Hg19::chr7:145507480..145507504,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr7:145507480..145507504, -
4.66e-66FFCP PHASE1:Hg19::chr2:109392190..109392199,+#_b2e34ef963fe50e9615141fe0877d1e9p14@RANBP2
4.66e-66FFCP PHASE2:Hg19::chr4:146980404..146980417,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr4:146980404..146980417, -
4.66e-66FFCP PHASE1:Hg19::chr10:52121805..52121816,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr10:52121805..52121816, -
4.66e-66FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_b2e34ef963fe50e9615141fe0877d1e9p@chr15:45950466..45950474, +
4.66e-66FFCP PHASE2:Hg19::chr4:146980425..146980439,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr4:146980425..146980439, -
4.66e-66FFCP PHASE2:Hg19::chr4:154343190..154343236,+#_b2e34ef963fe50e9615141fe0877d1e9+, p@chr4:154343190..154343236
4.66e-66FFCP PHASE1:Hg19::chr7:145507480..145507504,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr7:145507480..145507504, -
4.66e-66FFCP PHASE2:Hg19::chr2:231068302..231068309,+#_b2e34ef963fe50e9615141fe0877d1e9p2@ENST00000441657
4.66e-66FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr1:38201159..38201166, -
4.66e-66FFCP PHASE2:Hg19::chr10:52121805..52121816,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr10:52121805..52121816, -
4.66e-66FFCP PHASE1:Hg19::chr4:146980404..146980417,-#_b2e34ef963fe50e9615141fe0877d1e9p@chr4:146980404..146980417, -
4.66e-66FFCP PHASE2:Hg19::chr14:75906948..75906962,+#_b2e34ef963fe50e9615141fe0877d1e9p@chr14:75906948..75906962, +
4.66e-66FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_b2e34ef963fe50e9615141fe0877d1e9p@chr15:45950466..45950474, +
4.66e-66FFCP PHASE1:Hg19::chr4:154343190..154343236,+#_b2e34ef963fe50e9615141fe0877d1e9p@chr4:154343190..154343236, +
4.66e-66FFCP PHASE1:Hg19::chr2:231068302..231068309,+#_b2e34ef963fe50e9615141fe0877d1e9p2@ENST00000441657
1.46e-50FFCP PHASE1:Hg19::chr16:33629600..33629613,+#_76daa24d103ec5351d1673dc3b58e5e2p1@AF343368
1.46e-50FFCP PHASE2:Hg19::chr16:33629600..33629613,+#_76daa24d103ec5351d1673dc3b58e5e2p1@AF343368
1.46e-50FFCP PHASE1:Hg19::chr15:36739580..36739587,-#_76daa24d103ec5351d1673dc3b58e5e2p@chr15:36739580..36739587, -
1.46e-50FFCP PHASE2:Hg19::chr15:36739580..36739587,-#_76daa24d103ec5351d1673dc3b58e5e2p@chr15:36739580..36739587, -
2.42e-50FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_62938c7ca91ab0436be409ef07045a6bp@chr4:150822397..150822409, -
2.42e-50FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_62938c7ca91ab0436be409ef07045a6bp24@RPRD1B
2.42e-50FFCP PHASE1:Hg19::chr9:79267432..79267452,-#_62938c7ca91ab0436be409ef07045a6bp@chr9:79267432..79267452, -
2.42e-50FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_62938c7ca91ab0436be409ef07045a6bp@chr4:150822397..150822409, -
2.42e-50FFCP PHASE2:Hg19::chr9:79267432..79267452,-#_62938c7ca91ab0436be409ef07045a6bp@chr9:79267432..79267452, -
2.42e-50FFCP PHASE2:Hg19::chr15:75639773..75639782,+#_62938c7ca91ab0436be409ef07045a6bp15@NEIL1
2.42e-50FFCP PHASE1:Hg19::chr14:106091539..106091550,-#_62938c7ca91ab0436be409ef07045a6bp@chr14:106091539..106091550, -
2.42e-50FFCP PHASE2:Hg19::chr12:31135774..31135816,+#_62938c7ca91ab0436be409ef07045a6bp@chr12:31135774..31135816, +
2.42e-50FFCP PHASE2:Hg19::chr14:106091539..106091550,-#_62938c7ca91ab0436be409ef07045a6bp@chr14:106091539..106091550, -
2.42e-50FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_62938c7ca91ab0436be409ef07045a6bp24@RPRD1B
2.42e-50FFCP PHASE1:Hg19::chr12:31135774..31135816,+#_62938c7ca91ab0436be409ef07045a6bp@chr12:31135774..31135816, +
2.42e-50FFCP PHASE1:Hg19::chr15:75639773..75639782,+#_62938c7ca91ab0436be409ef07045a6bp15@NEIL1
3.99e-50FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_825463f3707d0849b4e096ff19cd7a2ep1@MS4A12
3.99e-50FFCP PHASE1:Hg19::chr4:20985642..20985664,-#_825463f3707d0849b4e096ff19cd7a2ep16@KCNIP4
3.99e-50FFCP PHASE2:Hg19::chr8:119294370..119294381,+#_825463f3707d0849b4e096ff19cd7a2ep4@ENST00000366457
3.99e-50FFCP PHASE1:Hg19::chr8:119294370..119294381,+#_825463f3707d0849b4e096ff19cd7a2ep4@ENST00000366457
3.99e-50FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_825463f3707d0849b4e096ff19cd7a2ep1@MS4A12
3.99e-50FFCP PHASE2:Hg19::chr7:40852366..40852377,+#_825463f3707d0849b4e096ff19cd7a2ep@chr7:40852366..40852377, +
3.99e-50FFCP PHASE1:Hg19::chr7:40852366..40852377,+#_825463f3707d0849b4e096ff19cd7a2ep@chr7:40852366..40852377, +
3.99e-50FFCP PHASE2:Hg19::chr4:20985642..20985664,-#_825463f3707d0849b4e096ff19cd7a2ep16@KCNIP4
6.58e-50FFCP PHASE1:Hg19::chr3:62809350..62809370,+#_da0cdb7fe7e49d71345fa465589c33e1p@chr3:62809350..62809370, +
6.58e-50FFCP PHASE2:Hg19::chr12:125634292..125634301,-#_da0cdb7fe7e49d71345fa465589c33e1p@chr12:125634292..125634301, -
6.58e-50FFCP PHASE1:Hg19::chr3:187694215..187694226,-#_da0cdb7fe7e49d71345fa465589c33e1p2@ENST00000446091, p2@uc003frr.1
6.58e-50FFCP PHASE1:Hg19::chr5:78505723..78505730,+#_da0cdb7fe7e49d71345fa465589c33e1p@chr5:78505723..78505730, +
6.58e-50FFCP PHASE2:Hg19::chr7:40850556..40850576,+#_da0cdb7fe7e49d71345fa465589c33e1p@chr7:40850556..40850576, +
6.58e-50FFCP PHASE1:Hg19::chr12:125634292..125634301,-#_da0cdb7fe7e49d71345fa465589c33e1p@chr12:125634292..125634301, -
6.58e-50FFCP PHASE1:Hg19::chr7:40850556..40850576,+#_da0cdb7fe7e49d71345fa465589c33e1p@chr7:40850556..40850576, +
6.58e-50FFCP PHASE2:Hg19::chr5:78505723..78505730,+#_da0cdb7fe7e49d71345fa465589c33e1p@chr5:78505723..78505730, +
6.58e-50FFCP PHASE2:Hg19::chr3:62809350..62809370,+#_da0cdb7fe7e49d71345fa465589c33e1p@chr3:62809350..62809370, +
6.58e-50FFCP PHASE2:Hg19::chr3:187694215..187694226,-#_da0cdb7fe7e49d71345fa465589c33e1p2@ENST00000446091, p2@uc003frr.1
6.58e-50FFCP PHASE2:Hg19::chr14:106746150..106746153,-#_da0cdb7fe7e49d71345fa465589c33e1p1@IGHV3-25
6.58e-50FFCP PHASE1:Hg19::chr14:106746150..106746153,-#_da0cdb7fe7e49d71345fa465589c33e1p1@IGHV3-25
2.74e-44FFCP PHASE1:Mm9::chr3:87454882..87454885,+#_beeeb7e825ae800593e05a89d7a0c373p@chr3:87454882..87454885, +
2.74e-44FFCP PHASE2:Mm9::chr11:22635514..22635519,+#_beeeb7e825ae800593e05a89d7a0c373p@chr11:22635514..22635519, +
2.74e-44FFCP PHASE2:Mm9::chr5:8046077..8046078,+#_beeeb7e825ae800593e05a89d7a0c373p6@Sri
2.74e-44FFCP PHASE1:Mm9::chr8:116378848..116378855,-#_beeeb7e825ae800593e05a89d7a0c373p@chr8:116378848..116378855, -
2.74e-44FFCP PHASE2:Mm9::chr10:114659760..114659768,-#_beeeb7e825ae800593e05a89d7a0c373p@chr10:114659760..114659768, -
2.74e-44FFCP PHASE2:Mm9::chr3:87454882..87454885,+#_beeeb7e825ae800593e05a89d7a0c373p@chr3:87454882..87454885, +