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UBERON:0001154

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Name:vermiform appendix
Namespace:FANTOM
Definition:"Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix[FMA]. a narrowed, thickened, lymphoid-rich caecal apex [Fisher 2000]." [FMA:14542, Wikipedia:Vermiform_appendix]
Xrefs:
links:

BTO:0000084
EFO:0000849
EHDAA2:0000588
EV:0100076
EV:0100080
FMA:14542
GAID:308
galen:AppendixVermiformis
[ Gray536.png Gray536.png]
[ 200px-Gray536.png 200px-Gray536.png]
MA:0001540
MAT:0000287
MESH:A.03.492.411.495.209.290
MIAA:0000287
ncithesaurus:Vermiform_Appendix
OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA
SCTID:181255000

VHOG:0001306
Synonyms: "apex of cecum" RELATED []
"appendix vermiformis" EXACT [FMA:14542, FMA:TA]
"appendix vermiformis" RELATED LATIN [Wikipedia:Vermiform_appendix]
"caecal appendix" EXACT []
"vermiform appendix" EXACT []
"vermix" EXACT []
Alt_id: UBERON:FMA_14542-MA_0001540-MIAA_0000287
Subset: organ_slim
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0013765(digestive system element)
develops_from:UBERON:0001045(midgut)
part_of:UBERON:0001153(caecum),UBERON:0004907(lower digestive tract)



Children

derives from:FF:0010189 (human appendix - adult sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001154 (vermiform appendix), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr3:164875937..164875960,-#_0d8b26f99a13be234e64e78081546e2ep1@ENST00000472120
9.37e-99FFCP PHASE2:Hg19::chr16:23489788..23489792,-#_0d8b26f99a13be234e64e78081546e2ep@chr16:23489788..23489792, -
9.37e-99FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_0d8b26f99a13be234e64e78081546e2ep30@RPRD1B
9.37e-99FFCP PHASE1:Hg19::chr16:23489788..23489792,-#_0d8b26f99a13be234e64e78081546e2ep@chr16:23489788..23489792, -
9.37e-99FFCP PHASE1:Hg19::chr3:164875937..164875960,-#_0d8b26f99a13be234e64e78081546e2ep1@ENST00000472120
9.37e-99FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_0d8b26f99a13be234e64e78081546e2ep30@RPRD1B
2.55e-98FFCP PHASE2:Hg19::chr9:37384457..37384469,-#_5aad52455c16de63e13ba7422076afcdp1@ENST00000452923
2.55e-98FFCP PHASE1:Hg19::chr9:37384457..37384469,-#_5aad52455c16de63e13ba7422076afcdp1@ENST00000452923
2.55e-98FFCP PHASE1:Hg19::chr19:42190911..42190925,-#_5aad52455c16de63e13ba7422076afcd-, p@chr19:42190911..42190925
2.55e-98FFCP PHASE2:Hg19::chr5:78065820..78065833,-#_5aad52455c16de63e13ba7422076afcdp27@LHFPL2
2.55e-98FFCP PHASE1:Hg19::chr5:78065820..78065833,-#_5aad52455c16de63e13ba7422076afcdp27@LHFPL2
2.55e-98FFCP PHASE2:Hg19::chr14:106090812..106090849,-#_5aad52455c16de63e13ba7422076afcdp@chr14:106090812..106090849, -
2.55e-98FFCP PHASE2:Hg19::chr19:42190911..42190925,-#_5aad52455c16de63e13ba7422076afcd-, p@chr19:42190911..42190925
2.55e-98FFCP PHASE1:Hg19::chr2:6919697..6919713,-#_5aad52455c16de63e13ba7422076afcdp@chr2:6919697..6919713, -
2.55e-98FFCP PHASE1:Hg19::chr8:23282797..23282803,-#_5aad52455c16de63e13ba7422076afcdp37@LOXL2
2.55e-98FFCP PHASE2:Hg19::chr14:106091272..106091292,-#_5aad52455c16de63e13ba7422076afcdp@chr14:106091272..106091292, -
2.55e-98FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_5aad52455c16de63e13ba7422076afcdp@chr7:25361115..25361117, +
2.55e-98FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_5aad52455c16de63e13ba7422076afcdp@chr7:25361115..25361117, +
2.55e-98FFCP PHASE1:Hg19::chr14:106090812..106090849,-#_5aad52455c16de63e13ba7422076afcdp@chr14:106090812..106090849, -
2.55e-98FFCP PHASE1:Hg19::chr1:204247050..204247059,-#_5aad52455c16de63e13ba7422076afcdp@chr1:204247050..204247059, -
2.55e-98FFCP PHASE2:Hg19::chr2:6919697..6919713,-#_5aad52455c16de63e13ba7422076afcdp@chr2:6919697..6919713, -
2.55e-98FFCP PHASE1:Hg19::chr14:106091272..106091292,-#_5aad52455c16de63e13ba7422076afcdp@chr14:106091272..106091292, -
2.55e-98FFCP PHASE2:Hg19::chr8:23282797..23282803,-#_5aad52455c16de63e13ba7422076afcdp37@LOXL2
2.55e-98FFCP PHASE2:Hg19::chr1:204247050..204247059,-#_5aad52455c16de63e13ba7422076afcdp@chr1:204247050..204247059, -
1.23e-66FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_01f263cd64b133dce57596ff770ec761p58@LPP
1.23e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_01f263cd64b133dce57596ff770ec761p58@LPP
1.23e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_01f263cd64b133dce57596ff770ec761p43@LPP
1.23e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_01f263cd64b133dce57596ff770ec761p43@LPP
2.39e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_02294e131eabb3da874b90a919d97d8cp@chr16:69418649..69418659, -
2.39e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_02294e131eabb3da874b90a919d97d8cp@chr16:69418649..69418659, -
2.39e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_02294e131eabb3da874b90a919d97d8cp2@FCRL4
2.39e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_02294e131eabb3da874b90a919d97d8cp2@FCRL4
4.66e-66FFCP PHASE2:Hg19::chr14:75906948..75906962,+#_ac270f18d9dac88892a32774647f5805p@chr14:75906948..75906962, +
4.66e-66FFCP PHASE1:Hg19::chr10:52121805..52121816,-#_ac270f18d9dac88892a32774647f5805p@chr10:52121805..52121816, -
4.66e-66FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_ac270f18d9dac88892a32774647f5805p@chr15:45950466..45950474, +
4.66e-66FFCP PHASE1:Hg19::chr4:154343190..154343236,+#_ac270f18d9dac88892a32774647f5805p@chr4:154343190..154343236, +
4.66e-66FFCP PHASE1:Hg19::chr2:231068302..231068309,+#_ac270f18d9dac88892a32774647f5805p2@ENST00000441657
4.66e-66FFCP PHASE1:Hg19::chr4:146980425..146980439,-#_ac270f18d9dac88892a32774647f5805p@chr4:146980425..146980439, -
4.66e-66FFCP PHASE1:Hg19::chr14:75906948..75906962,+#_ac270f18d9dac88892a32774647f5805p@chr14:75906948..75906962, +
4.66e-66FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_ac270f18d9dac88892a32774647f5805p@chr15:45950466..45950474, +
4.66e-66FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_ac270f18d9dac88892a32774647f5805p@chr1:38201159..38201166, -
4.66e-66FFCP PHASE1:Hg19::chr7:145507480..145507504,-#_ac270f18d9dac88892a32774647f5805p@chr7:145507480..145507504, -
4.66e-66FFCP PHASE2:Hg19::chr2:231068302..231068309,+#_ac270f18d9dac88892a32774647f5805p2@ENST00000441657
4.66e-66FFCP PHASE1:Hg19::chr2:109392190..109392199,+#_ac270f18d9dac88892a32774647f5805p14@RANBP2
4.66e-66FFCP PHASE2:Hg19::chr4:146980404..146980417,-#_ac270f18d9dac88892a32774647f5805p@chr4:146980404..146980417, -
4.66e-66FFCP PHASE2:Hg19::chr7:145507480..145507504,-#_ac270f18d9dac88892a32774647f5805p@chr7:145507480..145507504, -
4.66e-66FFCP PHASE2:Hg19::chr4:154343190..154343236,+#_ac270f18d9dac88892a32774647f5805+, p@chr4:154343190..154343236
4.66e-66FFCP PHASE2:Hg19::chr2:109392190..109392199,+#_ac270f18d9dac88892a32774647f5805p14@RANBP2
4.66e-66FFCP PHASE2:Hg19::chr10:52121805..52121816,-#_ac270f18d9dac88892a32774647f5805p@chr10:52121805..52121816, -
4.66e-66FFCP PHASE2:Hg19::chr4:146980425..146980439,-#_ac270f18d9dac88892a32774647f5805p@chr4:146980425..146980439, -
4.66e-66FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_ac270f18d9dac88892a32774647f5805p@chr1:38201159..38201166, -
4.66e-66FFCP PHASE1:Hg19::chr4:146980404..146980417,-#_ac270f18d9dac88892a32774647f5805p@chr4:146980404..146980417, -
1.46e-50FFCP PHASE1:Hg19::chr16:33629600..33629613,+#_6e53a8d30b935f92a639138e8acfa56fp1@AF343368
1.46e-50FFCP PHASE2:Hg19::chr15:36739580..36739587,-#_6e53a8d30b935f92a639138e8acfa56fp@chr15:36739580..36739587, -
1.46e-50FFCP PHASE2:Hg19::chr16:33629600..33629613,+#_6e53a8d30b935f92a639138e8acfa56fp1@AF343368
1.46e-50FFCP PHASE1:Hg19::chr15:36739580..36739587,-#_6e53a8d30b935f92a639138e8acfa56fp@chr15:36739580..36739587, -
2.42e-50FFCP PHASE1:Hg19::chr9:79267432..79267452,-#_96c92f535d5246f737dcdf638ab191a8p@chr9:79267432..79267452, -
2.42e-50FFCP PHASE1:Hg19::chr14:106091539..106091550,-#_96c92f535d5246f737dcdf638ab191a8p@chr14:106091539..106091550, -
2.42e-50FFCP PHASE1:Hg19::chr15:75639773..75639782,+#_96c92f535d5246f737dcdf638ab191a8p15@NEIL1
2.42e-50FFCP PHASE2:Hg19::chr9:79267432..79267452,-#_96c92f535d5246f737dcdf638ab191a8p@chr9:79267432..79267452, -
2.42e-50FFCP PHASE2:Hg19::chr12:31135774..31135816,+#_96c92f535d5246f737dcdf638ab191a8p@chr12:31135774..31135816, +
2.42e-50FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_96c92f535d5246f737dcdf638ab191a8p24@RPRD1B
2.42e-50FFCP PHASE1:Hg19::chr12:31135774..31135816,+#_96c92f535d5246f737dcdf638ab191a8p@chr12:31135774..31135816, +
2.42e-50FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_96c92f535d5246f737dcdf638ab191a8p@chr4:150822397..150822409, -
2.42e-50FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_96c92f535d5246f737dcdf638ab191a8p@chr4:150822397..150822409, -
2.42e-50FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_96c92f535d5246f737dcdf638ab191a8p24@RPRD1B
2.42e-50FFCP PHASE2:Hg19::chr14:106091539..106091550,-#_96c92f535d5246f737dcdf638ab191a8p@chr14:106091539..106091550, -
2.42e-50FFCP PHASE2:Hg19::chr15:75639773..75639782,+#_96c92f535d5246f737dcdf638ab191a8p15@NEIL1
3.99e-50FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_894ffb0830438f27852be258e9bb1d19p1@MS4A12
3.99e-50FFCP PHASE1:Hg19::chr7:40852366..40852377,+#_894ffb0830438f27852be258e9bb1d19p@chr7:40852366..40852377, +
3.99e-50FFCP PHASE1:Hg19::chr4:20985642..20985664,-#_894ffb0830438f27852be258e9bb1d19p16@KCNIP4
3.99e-50FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_894ffb0830438f27852be258e9bb1d19p1@MS4A12
3.99e-50FFCP PHASE2:Hg19::chr8:119294370..119294381,+#_894ffb0830438f27852be258e9bb1d19p4@ENST00000366457
3.99e-50FFCP PHASE2:Hg19::chr4:20985642..20985664,-#_894ffb0830438f27852be258e9bb1d19p16@KCNIP4
3.99e-50FFCP PHASE1:Hg19::chr8:119294370..119294381,+#_894ffb0830438f27852be258e9bb1d19p4@ENST00000366457
3.99e-50FFCP PHASE2:Hg19::chr7:40852366..40852377,+#_894ffb0830438f27852be258e9bb1d19p@chr7:40852366..40852377, +
6.58e-50FFCP PHASE2:Hg19::chr3:62809350..62809370,+#_3e41537f87b9935de0acffd8a4e5498dp@chr3:62809350..62809370, +
6.58e-50FFCP PHASE1:Hg19::chr3:62809350..62809370,+#_3e41537f87b9935de0acffd8a4e5498dp@chr3:62809350..62809370, +
6.58e-50FFCP PHASE1:Hg19::chr12:125634292..125634301,-#_3e41537f87b9935de0acffd8a4e5498dp@chr12:125634292..125634301, -
6.58e-50FFCP PHASE2:Hg19::chr3:187694215..187694226,-#_3e41537f87b9935de0acffd8a4e5498dp2@ENST00000446091, p2@uc003frr.1
6.58e-50FFCP PHASE1:Hg19::chr3:187694215..187694226,-#_3e41537f87b9935de0acffd8a4e5498dp2@ENST00000446091, p2@uc003frr.1
6.58e-50FFCP PHASE1:Hg19::chr14:106746150..106746153,-#_3e41537f87b9935de0acffd8a4e5498dp1@IGHV3-25
6.58e-50FFCP PHASE2:Hg19::chr5:78505723..78505730,+#_3e41537f87b9935de0acffd8a4e5498dp@chr5:78505723..78505730, +
6.58e-50FFCP PHASE1:Hg19::chr5:78505723..78505730,+#_3e41537f87b9935de0acffd8a4e5498dp@chr5:78505723..78505730, +
6.58e-50FFCP PHASE2:Hg19::chr7:40850556..40850576,+#_3e41537f87b9935de0acffd8a4e5498dp@chr7:40850556..40850576, +
6.58e-50FFCP PHASE2:Hg19::chr12:125634292..125634301,-#_3e41537f87b9935de0acffd8a4e5498dp@chr12:125634292..125634301, -
6.58e-50FFCP PHASE2:Hg19::chr14:106746150..106746153,-#_3e41537f87b9935de0acffd8a4e5498dp1@IGHV3-25
6.58e-50FFCP PHASE1:Hg19::chr7:40850556..40850576,+#_3e41537f87b9935de0acffd8a4e5498dp@chr7:40850556..40850576, +
6.62e-41FFCP PHASE2:Hg19::chr1:157567868..157567880,-#_e8947211b2e9282da1b61fc60bda6a7cp1@FCRL4
6.62e-41FFCP PHASE1:Hg19::chr1:157567868..157567880,-#_e8947211b2e9282da1b61fc60bda6a7cp1@FCRL4
6.62e-41FFCP PHASE2:Hg19::chr3:58853593..58853604,-#_e8947211b2e9282da1b61fc60bda6a7cp@chr3:58853593..58853604, -
6.62e-41FFCP PHASE1:Hg19::chr18:43195438..43195446,+#_e8947211b2e9282da1b61fc60bda6a7cp2@SLC14A2
6.62e-41FFCP PHASE2:Hg19::chr6:45748006..45748023,+#_e8947211b2e9282da1b61fc60bda6a7cp@chr6:45748006..45748023, +
6.62e-41FFCP PHASE1:Hg19::chr3:58853593..58853604,-#_e8947211b2e9282da1b61fc60bda6a7cp@chr3:58853593..58853604, -
6.62e-41FFCP PHASE2:Hg19::chr18:43195438..43195446,+#_e8947211b2e9282da1b61fc60bda6a7cp2@SLC14A2
6.62e-41FFCP PHASE1:Hg19::chr6:45748006..45748023,+#_e8947211b2e9282da1b61fc60bda6a7cp@chr6:45748006..45748023, +
9.91e-41FFCP PHASE2:Hg19::chr11:64914237..64914243,-#_42dcf8698f725b5d35d71cc7aac550e5p@chr11:64914237..64914243, -
9.91e-41FFCP PHASE2:Hg19::chr5:78065848..78065859,-#_42dcf8698f725b5d35d71cc7aac550e5p23@LHFPL2
9.91e-41FFCP PHASE1:Hg19::chr5:78065848..78065859,-#_42dcf8698f725b5d35d71cc7aac550e5p23@LHFPL2
9.91e-41FFCP PHASE2:Hg19::chr1:207101958..207101963,-#_42dcf8698f725b5d35d71cc7aac550e5p@chr1:207101958..207101963, -