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UBERON:0001155

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Name:colon
Namespace:FANTOM
Definition:"Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. <a href
Xrefs:
links:

AAO:0010400
BTO:0000269
EFO:0000361
EHDAA2:0000779
EMAPA:18939
EV:0100079
FMA:14543
GAID:309
galen:Colon
MA:0000335
MAP:0000001
MAT:0000526
MESH:A.03.492.411.495.356
ncithesaurus:Colon
OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA
SCTID:302508007
TAO:0000706
VHOG:0000648
XAO:0000243

ZFA:0000706
Synonyms: "hindgut" RELATED []
"large bowel" EXACT []
"posterior intestine" NARROW []
"posterior intestine - zebrafish" BROAD []
Comments:TODO: abstract this such that it legitimately covers all vertebrates
Alt_id: UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004921(subdivision of digestive tract)
part_of:UBERON:0000059(large intestine)



Children

is a:FF:0100797 (colonic cancer cell line)
derives from:FF:0010014 (human colon - adult sample),FF:0010070 (human colon - fetal sample),FF:0011323 (mouse colon- adult sample)
part of:FF:0000181 (human smooth muscle of colon sample),UBERON:0001153 (caecum),FF:0010070 (human colon - fetal sample),CL:1000280 (smooth muscle cell of colon)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001155 (colon), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.37e-87FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_3c506760b257ba2ace0b7df0839e557cp1@MS4A12
1.37e-87FFCP PHASE2:Hg19::chr13:28541477..28541493,-#_3c506760b257ba2ace0b7df0839e557cp6@CDX2
1.37e-87FFCP PHASE1:Hg19::chr13:28541477..28541493,-#_3c506760b257ba2ace0b7df0839e557cp6@CDX2
1.37e-87FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_3c506760b257ba2ace0b7df0839e557cp@chr4:150822397..150822409, -
1.37e-87FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_3c506760b257ba2ace0b7df0839e557cp1@MS4A12
1.37e-87FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_3c506760b257ba2ace0b7df0839e557cp@chr4:150822397..150822409, -
2.16e-70FFCP PHASE1:Hg19::chr2:200333534..200333558,+#_c6ef2a5e2509fcd81afe4620b23d9819p1@ENST00000446911
2.16e-70FFCP PHASE2:Hg19::chr16:67463701..67463709,+#_c6ef2a5e2509fcd81afe4620b23d9819p@chr16:67463701..67463709, +
2.16e-70FFCP PHASE1:Hg19::chr16:67463701..67463709,+#_c6ef2a5e2509fcd81afe4620b23d9819p@chr16:67463701..67463709, +
2.16e-70FFCP PHASE2:Hg19::chr2:200333534..200333558,+#_c6ef2a5e2509fcd81afe4620b23d9819p1@ENST00000446911
2.58e-70FFCP PHASE2:Hg19::chr11:114430570..114430581,-#_88806d0d2a73fa87de2929c70e9430adp2@FAM55A
2.58e-70FFCP PHASE1:Hg19::chr11:114430570..114430581,-#_88806d0d2a73fa87de2929c70e9430adp2@FAM55A
3.09e-70FFCP PHASE1:Hg19::chr7:100612647..100612650,+#_7a315cbdae1ccf6cb8517b8aa89f7c95p8@MUC12
3.09e-70FFCP PHASE2:Hg19::chr6:168479679..168479688,-#_7a315cbdae1ccf6cb8517b8aa89f7c95p6@FRMD1
3.09e-70FFCP PHASE1:Hg19::chr16:25228264..25228273,+#_7a315cbdae1ccf6cb8517b8aa89f7c95p1@AQP8
3.09e-70FFCP PHASE2:Hg19::chr16:25228264..25228273,+#_7a315cbdae1ccf6cb8517b8aa89f7c95p1@AQP8
3.09e-70FFCP PHASE2:Hg19::chr7:100612647..100612650,+#_7a315cbdae1ccf6cb8517b8aa89f7c95p8@MUC12
3.09e-70FFCP PHASE1:Hg19::chr6:168479679..168479688,-#_7a315cbdae1ccf6cb8517b8aa89f7c95p6@FRMD1
3.75e-66FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_66f5eafdf9b0c4b6b6f4b56d1eb8b2e0p@chr15:45950466..45950474, +
3.75e-66FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_66f5eafdf9b0c4b6b6f4b56d1eb8b2e0p@chr1:38201159..38201166, -
3.75e-66FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_66f5eafdf9b0c4b6b6f4b56d1eb8b2e0p@chr15:45950466..45950474, +
3.75e-66FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_66f5eafdf9b0c4b6b6f4b56d1eb8b2e0p@chr1:38201159..38201166, -
6.42e-59FFCP PHASE2:Hg19::chr11:114522262..114522267,-#_a5c3d88bb81406389ba8a40f79dafcd0p@chr11:114522262..114522267, -
6.42e-59FFCP PHASE1:Hg19::chr11:114522262..114522267,-#_a5c3d88bb81406389ba8a40f79dafcd0p@chr11:114522262..114522267, -
8.65e-59FFCP PHASE2:Hg19::chr16:29748234..29748245,-#_82a76f8fa68240c5db3bbd8d6c4895abp@chr16:29748234..29748245, -
8.65e-59FFCP PHASE1:Hg19::chr16:29748234..29748245,-#_82a76f8fa68240c5db3bbd8d6c4895abp@chr16:29748234..29748245, -
1.0e-58FFCP PHASE2:Hg19::chr1:155912696..155912738,-#_5eadc0f6e277b37f6ee1b61b3bb71a7ap@chr1:155912696..155912738, -
1.0e-58FFCP PHASE1:Hg19::chr1:155912696..155912738,-#_5eadc0f6e277b37f6ee1b61b3bb71a7ap@chr1:155912696..155912738, -
1.35e-58FFCP PHASE2:Hg19::chr21:44151895..44151908,+#_73b3a03c1e8f48fabf6fab6fa61fdc99p6@PDE9A
1.35e-58FFCP PHASE1:Hg19::chr21:44151895..44151908,+#_73b3a03c1e8f48fabf6fab6fa61fdc99p6@PDE9A
1.6e-52FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_14accade468969b63d2739a57237cdbbp8@CDX2
1.6e-52FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_14accade468969b63d2739a57237cdbbp8@CDX2
1.32e-50FFCP PHASE2:Hg19::chr7:100612686..100612700,+#_55f4cbc718fdad2c383d5cf117d2403dp3@MUC12
1.32e-50FFCP PHASE1:Hg19::chr7:100612686..100612700,+#_55f4cbc718fdad2c383d5cf117d2403dp3@MUC12
1.32e-50FFCP PHASE2:Hg19::chr8:86253920..86253944,-#_55f4cbc718fdad2c383d5cf117d2403dp2@CA1
1.32e-50FFCP PHASE1:Hg19::chr8:86253920..86253944,-#_55f4cbc718fdad2c383d5cf117d2403dp2@CA1
1.49e-50FFCP PHASE1:Hg19::chr3:108476254..108476257,-#_dda707e8247cb3604bcb7178a1e52457p1@RETNLB
1.49e-50FFCP PHASE2:Hg19::chr7:100612141..100612155,-#_dda707e8247cb3604bcb7178a1e52457p@chr7:100612141..100612155, -
1.49e-50FFCP PHASE2:Hg19::chr3:108476254..108476257,-#_dda707e8247cb3604bcb7178a1e52457p1@RETNLB
1.49e-50FFCP PHASE1:Hg19::chr7:100612141..100612155,-#_dda707e8247cb3604bcb7178a1e52457p@chr7:100612141..100612155, -
1.7e-50FFCP PHASE2:Hg19::chr12:12223888..12223897,+#_5133412603218b65adad777d7d0be92bp6@BCL2L14
1.7e-50FFCP PHASE1:Hg19::chr12:12223888..12223897,+#_5133412603218b65adad777d7d0be92bp6@BCL2L14
2.19e-50FFCP PHASE1:Hg19::chr6:168479694..168479708,-#_028a95b9a1e3120fcccce9a7c2a2e73fp3@FRMD1
2.19e-50FFCP PHASE2:Hg19::chr6:168479694..168479708,-#_028a95b9a1e3120fcccce9a7c2a2e73fp3@FRMD1
2.49e-50FFCP PHASE1:Hg19::chr11:114466471..114466474,-#_2f72cde143db95b84fb1bbcea7673c02p4@FAM55D
2.49e-50FFCP PHASE2:Hg19::chr11:114466471..114466474,-#_2f72cde143db95b84fb1bbcea7673c02p4@FAM55D
2.83e-50FFCP PHASE2:Hg19::chr17:1013514..1013520,-#_d61164d839dc7fcaf7d336fdb66efeeep@chr17:1013514..1013520, -
2.83e-50FFCP PHASE1:Hg19::chr17:1013514..1013520,-#_d61164d839dc7fcaf7d336fdb66efeeep@chr17:1013514..1013520, -
4.7e-50FFCP PHASE2:Hg19::chr11:114466498..114466513,-#_55c68f05cb65e83da7c4cc2a8875063bp3@FAM55D
4.7e-50FFCP PHASE1:Hg19::chr11:114466477..114466489,-#_55c68f05cb65e83da7c4cc2a8875063bp1@FAM55D
4.7e-50FFCP PHASE1:Hg19::chr11:114466498..114466513,-#_55c68f05cb65e83da7c4cc2a8875063bp3@FAM55D
4.7e-50FFCP PHASE2:Hg19::chr11:114466477..114466489,-#_55c68f05cb65e83da7c4cc2a8875063bp1@FAM55D
6.62e-50FFCP PHASE2:Hg19::chr2:200329672..200329678,-#_490e7f423ab566e6f25523dd5fb6639ep50@SATB2
6.62e-50FFCP PHASE1:Hg19::chr2:200329672..200329678,-#_490e7f423ab566e6f25523dd5fb6639ep50@SATB2
7.64e-50FFCP PHASE1:Hg19::chr4:120243266..120243277,-#_b60046092abc4d6659c321a5307eb449p2@FABP2
7.64e-50FFCP PHASE2:Hg19::chr4:120243266..120243277,-#_b60046092abc4d6659c321a5307eb449p2@FABP2
9.25e-50FFCP PHASE2:Hg19::chr20:9313938..9313946,+#_1806b45ab2b96396072e3f38eed11820p@chr20:9313938..9313946, +
9.25e-50FFCP PHASE1:Hg19::chr20:9313938..9313946,+#_1806b45ab2b96396072e3f38eed11820p@chr20:9313938..9313946, +
9.25e-50FFCP PHASE2:Hg19::chr5:78505723..78505730,+#_1806b45ab2b96396072e3f38eed11820p@chr5:78505723..78505730, +
9.25e-50FFCP PHASE1:Hg19::chr5:78505723..78505730,+#_1806b45ab2b96396072e3f38eed11820p@chr5:78505723..78505730, +
1.84e-48FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_9e54099e498f5e5625483c58ffaf66edp2@NKX2-3
1.84e-48FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_9e54099e498f5e5625483c58ffaf66edp2@NKX2-3
4.09e-46FFCP PHASE1:Hg19::chr3:150966718..150966738,-#_f311c45389df36d93aa952676f52605bp9@P2RY14
4.09e-46FFCP PHASE2:Hg19::chr3:150966718..150966738,-#_f311c45389df36d93aa952676f52605bp9@P2RY14
9.46e-46FFCP PHASE1:Hg19::chr18:29769995..29770009,+#_d83e1b3d3b5b106562e016b4ac5de47ap1@MEP1B
9.46e-46FFCP PHASE2:Hg19::chr18:29769995..29770009,+#_d83e1b3d3b5b106562e016b4ac5de47ap1@MEP1B
9.75e-45FFCP PHASE2:Hg19::chr12:52473515..52473526,+#_5730b40bfa6ba31c21bc0950758d0347p3@ENST00000546390, p3@uc009zme.1
9.75e-45FFCP PHASE1:Hg19::chr3:164875937..164875960,-#_5730b40bfa6ba31c21bc0950758d0347p1@ENST00000472120
9.75e-45FFCP PHASE1:Hg19::chr18:8974567..8974578,+#_5730b40bfa6ba31c21bc0950758d0347p@chr18:8974567..8974578, +
9.75e-45FFCP PHASE1:Hg19::chr15:45950495..45950505,+#_5730b40bfa6ba31c21bc0950758d0347p@chr15:45950495..45950505, +
9.75e-45FFCP PHASE2:Hg19::chr18:8974567..8974578,+#_5730b40bfa6ba31c21bc0950758d0347p@chr18:8974567..8974578, +
9.75e-45FFCP PHASE1:Hg19::chr12:52473515..52473526,+#_5730b40bfa6ba31c21bc0950758d0347p3@ENST00000546390, p3@uc009zme.1
9.75e-45FFCP PHASE1:Hg19::chr19:42190911..42190925,-#_5730b40bfa6ba31c21bc0950758d0347-, p@chr19:42190911..42190925
9.75e-45FFCP PHASE1:Hg19::chr18:8974610..8974620,+#_5730b40bfa6ba31c21bc0950758d0347p@chr18:8974610..8974620, +
9.75e-45FFCP PHASE2:Hg19::chr15:45950495..45950505,+#_5730b40bfa6ba31c21bc0950758d0347p@chr15:45950495..45950505, +
9.75e-45FFCP PHASE2:Hg19::chr3:164875937..164875960,-#_5730b40bfa6ba31c21bc0950758d0347p1@ENST00000472120
9.75e-45FFCP PHASE2:Hg19::chr18:8974610..8974620,+#_5730b40bfa6ba31c21bc0950758d0347p@chr18:8974610..8974620, +
9.75e-45FFCP PHASE2:Hg19::chr19:42190911..42190925,-#_5730b40bfa6ba31c21bc0950758d0347-, p@chr19:42190911..42190925
1.45e-44FFCP PHASE2:Hg19::chr11:114430588..114430608,-#_28c77c0c7c597f10872f3bfe04b3e0aep1@FAM55A
1.45e-44FFCP PHASE1:Hg19::chr11:114430588..114430608,-#_28c77c0c7c597f10872f3bfe04b3e0aep1@FAM55A
1.63e-44FFCP PHASE2:Hg19::chr11:114466397..114466426,-#_21a3aab7b5850e5a31044735944a0eacp2@FAM55D
1.63e-44FFCP PHASE1:Hg19::chr11:114466397..114466426,-#_21a3aab7b5850e5a31044735944a0eacp2@FAM55D
2.03e-44FFCP PHASE2:Hg19::chr15:40648275..40648301,+#_a88da10b4f7580b8ef02625d549456e4p@chr15:40648275..40648301, +
2.03e-44FFCP PHASE1:Hg19::chr15:40648275..40648301,+#_a88da10b4f7580b8ef02625d549456e4p@chr15:40648275..40648301, +
3.18e-44FFCP PHASE1:Hg19::chr1:167059705..167059714,-#_13380c68b39cfb475d2e702d67911e77p6@GPA33
3.18e-44FFCP PHASE2:Hg19::chr1:167059705..167059714,-#_13380c68b39cfb475d2e702d67911e77p6@GPA33
4.52e-44FFCP PHASE2:Mm9::chr18:44716456..44716461,+#_5cae384b8573e7f9c7bfb840e5b9ffcbp@chr18:44716456..44716461, +
4.52e-44FFCP PHASE1:Mm9::chr4:82849680..82849681,-#_5cae384b8573e7f9c7bfb840e5b9ffcbp@chr4:82849680..82849681, -
4.52e-44FFCP PHASE2:Mm9::chr4:82849680..82849681,-#_5cae384b8573e7f9c7bfb840e5b9ffcbp@chr4:82849680..82849681, -
4.52e-44FFCP PHASE1:Mm9::chr18:44716456..44716461,+#_5cae384b8573e7f9c7bfb840e5b9ffcbp@chr18:44716456..44716461, +
4.52e-44FFCP PHASE1:Mm9::chr14:93595014..93595015,-#_5cae384b8573e7f9c7bfb840e5b9ffcbp@chr14:93595014..93595015, -
4.52e-44FFCP PHASE2:Mm9::chr14:93595014..93595015,-#_5cae384b8573e7f9c7bfb840e5b9ffcbp@chr14:93595014..93595015, -
5.54e-44FFCP PHASE1:Hg19::chr4:57138437..57138479,+#_87f58eb7b441abbd4bfb24e7aac6b2fap1@KIAA1211
5.54e-44FFCP PHASE2:Hg19::chr4:57138437..57138479,+#_87f58eb7b441abbd4bfb24e7aac6b2fap1@KIAA1211
7.52e-44FFCP PHASE1:Mm9::chr7:148822638..148822643,-#_d9b5752f8a5df381abf2efb564088a05p@chr7:148822638..148822643, -
7.52e-44FFCP PHASE2:Mm9::chr7:148822638..148822643,-#_d9b5752f8a5df381abf2efb564088a05p@chr7:148822638..148822643, -
9.83e-43FFCP PHASE2:Hg19::chrX:100129340..100129353,-#_811ec7a0e750306dd509417bba5b4a1cp2@NOX1
9.83e-43FFCP PHASE1:Hg19::chrX:100129340..100129353,-#_811ec7a0e750306dd509417bba5b4a1cp2@NOX1
6.29e-41FFCP PHASE2:Hg19::chr16:86229728..86229756,+#_b28b86adccb786ffb6518fda7b1850e9p@chr16:86229728..86229756, +
6.29e-41FFCP PHASE1:Hg19::chr16:86229728..86229756,+#_b28b86adccb786ffb6518fda7b1850e9p@chr16:86229728..86229756, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The last portion of the digestive system, it extracts water and salt from solid wastes before they are eliminated from the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.