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UBERON:0001235

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Name:adrenal cortex
Namespace:FANTOM
Definition:"Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]." [Wikipedia:Adrenal_cortex]
Xrefs:
links:

AAO:0011009
BTO:0000045
EFO:0000237
EMAPA:18427
EV:0100136
FMA:15632
GAID:447
[ Gray1185.png Gray1185.png]
[ 200px-Gray1185.png 200px-Gray1185.png]
MA:0000118
MAT:0000494
MESH:A.06.407.071.140
ncithesaurus:Adrenal_Cortex
SCTID:362584002
VHOG:0001481

XAO:0000165
Synonyms: "adrenal gland cortex" EXACT []
"cortex (glandula suprarenalis)" EXACT []
"cortex glandulae suprarenalis" RELATED LATIN [Wikipedia:Adrenal_cortex]
"cortex glandulae suprarenalis" RELATED [BTO:0000045]
"cortex of adrenal gland" EXACT []
"cortex of suprarenal gland" EXACT []
"suprarenal" RELATED []
"suprarenal cortex" EXACT []
Comments:Taxon notes: Kardong states that mammals are the first to have distinct cortext and medulla, but this contradicts XAO
Alt_id: UBERON:FMA_15632-MA_0000118-XAO_0000165
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0001851(cortex),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0002369(adrenal gland)



Children

is a:FF:10810-111A9 (adrenal cortex adenocarcinoma cell line:SW-13)
part of:CL:0002097 (cortical cell of adrenal gland)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001235 (adrenal cortex), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.39e-66FFCP PHASE1:Hg19::chr5:80434077..80434082,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:80434077..80434082, +
2.39e-66FFCP PHASE2:Hg19::chr1:197099062..197099073,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:197099062..197099073, -
2.39e-66FFCP PHASE2:Hg19::chr18:39541931..39541944,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr18:39541931..39541944, +
2.39e-66FFCP PHASE1:Hg19::chr7:152166833..152166847,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:152166833..152166847, +
2.39e-66FFCP PHASE1:Hg19::chr7:111054273..111054319,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111054273..111054319, -
2.39e-66FFCP PHASE2:Hg19::chr3:191075031..191075040,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:191075031..191075040, +
2.39e-66FFCP PHASE1:Hg19::chr6:113454693..113454704,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr6:113454693..113454704, +
2.39e-66FFCP PHASE1:Hg19::chrY:8692267..8692276,-#_005d3c8122c7a4c7c5d9de2135f40160p@chrY:8692267..8692276, -
2.39e-66FFCP PHASE1:Hg19::chr21:23058648..23058654,-#_005d3c8122c7a4c7c5d9de2135f40160p1@ENST00000416182
2.39e-66FFCP PHASE2:Hg19::chr4:35102522..35102546,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:35102522..35102546, +
2.39e-66FFCP PHASE1:Hg19::chr3:175131802..175131807,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:175131802..175131807, -
2.39e-66FFCP PHASE2:Hg19::chr21:23058648..23058654,-#_005d3c8122c7a4c7c5d9de2135f40160p1@ENST00000416182
2.39e-66FFCP PHASE2:Hg19::chr7:152166833..152166847,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:152166833..152166847, +
2.39e-66FFCP PHASE1:Hg19::chr5:103625303..103625326,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:103625303..103625326, +
2.39e-66FFCP PHASE2:Hg19::chr3:181328459..181328465,+#_005d3c8122c7a4c7c5d9de2135f40160p27@SOX2-OT
2.39e-66FFCP PHASE1:Hg19::chr13:80914790..80914795,-#_005d3c8122c7a4c7c5d9de2135f40160p41@SPRY2
2.39e-66FFCP PHASE2:Hg19::chr7:80365936..80365942,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:80365936..80365942, -
2.39e-66FFCP PHASE2:Hg19::chr4:67618078..67618083,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:67618078..67618083, -
2.39e-66FFCP PHASE2:Hg19::chr5:107631942..107631951,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:107631942..107631951, -
2.39e-66FFCP PHASE1:Hg19::chr7:80365936..80365942,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:80365936..80365942, -
2.39e-66FFCP PHASE1:Hg19::chr7:111051726..111051739,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111051726..111051739, -
2.39e-66FFCP PHASE2:Hg19::chr14:47289600..47289605,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr14:47289600..47289605, -
2.39e-66FFCP PHASE1:Hg19::chr4:35107931..35107966,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:35107931..35107966, +
2.39e-66FFCP PHASE1:Hg19::chr3:147869637..147869641,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:147869637..147869641, +
2.39e-66FFCP PHASE1:Hg19::chr3:181328499..181328502,+#_005d3c8122c7a4c7c5d9de2135f40160p32@SOX2-OT
2.39e-66FFCP PHASE2:Hg19::chr3:190999899..190999913,-#_005d3c8122c7a4c7c5d9de2135f40160p10@UTS2D
2.39e-66FFCP PHASE1:Hg19::chr14:47289600..47289605,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr14:47289600..47289605, -
2.39e-66FFCP PHASE2:Hg19::chr1:197099076..197099083,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:197099076..197099083, -
2.39e-66FFCP PHASE1:Hg19::chr18:39541931..39541944,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr18:39541931..39541944, +
2.39e-66FFCP PHASE2:Hg19::chr18:47407103..47407112,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr18:47407103..47407112, -
2.39e-66FFCP PHASE2:Hg19::chr5:13428853..13428866,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:13428853..13428866, +
2.39e-66FFCP PHASE2:Hg19::chr9:13323362..13323373,-#_005d3c8122c7a4c7c5d9de2135f40160p1@ENST00000433817
2.39e-66FFCP PHASE1:Hg19::chr1:218388686..218388689,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:218388686..218388689, -
2.39e-66FFCP PHASE2:Hg19::chr6:113454693..113454704,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr6:113454693..113454704, +
2.39e-66FFCP PHASE2:Hg19::chr3:175131802..175131807,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:175131802..175131807, -
2.39e-66FFCP PHASE2:Hg19::chr1:218221538..218221546,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:218221538..218221546, -
2.39e-66FFCP PHASE1:Hg19::chr3:191075031..191075040,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:191075031..191075040, +
2.39e-66FFCP PHASE2:Hg19::chr7:111051818..111051822,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111051818..111051822, -
2.39e-66FFCP PHASE2:Hg19::chr11:22707203..22707221,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr11:22707203..22707221, +
2.39e-66FFCP PHASE2:Hg19::chr3:191075256..191075261,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:191075256..191075261, +
2.39e-66FFCP PHASE1:Hg19::chr13:67730380..67730387,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr13:67730380..67730387, +
2.39e-66FFCP PHASE1:Hg19::chr11:22707203..22707221,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr11:22707203..22707221, +
2.39e-66FFCP PHASE2:Hg19::chr13:90020369..90020372,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr13:90020369..90020372, -
2.39e-66FFCP PHASE1:Hg19::chr21:23066072..23066082,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:23066072..23066082, +
2.39e-66FFCP PHASE1:Hg19::chr5:92179437..92179443,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:92179437..92179443, +
2.39e-66FFCP PHASE2:Hg19::chr4:35107931..35107966,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:35107931..35107966, +
2.39e-66FFCP PHASE2:Hg19::chr17:8639180..8639188,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr17:8639180..8639188, -
2.39e-66FFCP PHASE2:Hg19::chr21:23066072..23066082,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:23066072..23066082, +
2.39e-66FFCP PHASE2:Hg19::chr16:33408291..33408306,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr16:33408291..33408306, +
2.39e-66FFCP PHASE1:Hg19::chr2:150969704..150969713,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr2:150969704..150969713, +
2.39e-66FFCP PHASE1:Hg19::chr5:107631924..107631930,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:107631924..107631930, -
2.39e-66FFCP PHASE2:Hg19::chr3:111812180..111812186,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:111812180..111812186, +
2.39e-66FFCP PHASE2:Hg19::chr12:86272170..86272176,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr12:86272170..86272176, +
2.39e-66FFCP PHASE1:Hg19::chr2:123706107..123706109,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr2:123706107..123706109, -
2.39e-66FFCP PHASE2:Hg19::chr4:67651552..67651563,+#_005d3c8122c7a4c7c5d9de2135f40160+, p@chr4:67651552..67651563
2.39e-66FFCP PHASE1:Hg19::chr3:165535017..165535020,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:165535017..165535020, -
2.39e-66FFCP PHASE2:Hg19::chr2:123706107..123706109,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr2:123706107..123706109, -
2.39e-66FFCP PHASE2:Hg19::chr7:111033178..111033202,-#_005d3c8122c7a4c7c5d9de2135f40160p11@IMMP2L
2.39e-66FFCP PHASE1:Hg19::chr7:111051766..111051788,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111051766..111051788, -
2.39e-66FFCP PHASE2:Hg19::chr14:47289641..47289643,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr14:47289641..47289643, -
2.39e-66FFCP PHASE1:Hg19::chr3:190999899..190999913,-#_005d3c8122c7a4c7c5d9de2135f40160p10@UTS2D
2.39e-66FFCP PHASE2:Hg19::chr2:150969704..150969713,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr2:150969704..150969713, +
2.39e-66FFCP PHASE2:Hg19::chr3:190999916..190999925,-#_005d3c8122c7a4c7c5d9de2135f40160p13@UTS2D
2.39e-66FFCP PHASE1:Hg19::chr5:92020578..92020613,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:92020578..92020613, -
2.39e-66FFCP PHASE1:Hg19::chr14:47289641..47289643,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr14:47289641..47289643, -
2.39e-66FFCP PHASE2:Hg19::chr3:165535017..165535020,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:165535017..165535020, -
2.39e-66FFCP PHASE1:Hg19::chr18:47407103..47407112,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr18:47407103..47407112, -
2.39e-66FFCP PHASE1:Hg19::chr4:106656882..106656914,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:106656882..106656914, +
2.39e-66FFCP PHASE1:Hg19::chr2:210289128..210289131,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr2:210289128..210289131, +
2.39e-66FFCP PHASE1:Hg19::chr3:191075256..191075261,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:191075256..191075261, +
2.39e-66FFCP PHASE2:Hg19::chr7:111054273..111054319,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111054273..111054319, -
2.39e-66FFCP PHASE1:Hg19::chr16:33408291..33408306,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr16:33408291..33408306, +
2.39e-66FFCP PHASE1:Hg19::chr4:67618078..67618083,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:67618078..67618083, -
2.39e-66FFCP PHASE1:Hg19::chr3:161200616..161200619,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:161200616..161200619, +
2.39e-66FFCP PHASE2:Hg19::chr5:103625303..103625326,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:103625303..103625326, +
2.39e-66FFCP PHASE1:Hg19::chr21:23066147..23066153,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:23066147..23066153, +
2.39e-66FFCP PHASE2:Hg19::chr7:33397752..33397755,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:33397752..33397755, +
2.39e-66FFCP PHASE2:Hg19::chr21:23066147..23066153,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:23066147..23066153, +
2.39e-66FFCP PHASE2:Hg19::chr7:15802479..15802491,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:15802479..15802491, +
2.39e-66FFCP PHASE2:Hg19::chr3:161200616..161200619,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:161200616..161200619, +
2.39e-66FFCP PHASE2:Hg19::chr13:67730380..67730387,+#_005d3c8122c7a4c7c5d9de2135f40160+, p@chr13:67730380..67730387
2.39e-66FFCP PHASE1:Hg19::chr5:107631933..107631940,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:107631933..107631940, -
2.39e-66FFCP PHASE2:Hg19::chr3:181328499..181328502,+#_005d3c8122c7a4c7c5d9de2135f40160p32@SOX2-OT
2.39e-66FFCP PHASE2:Hg19::chr5:28339690..28339727,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:28339690..28339727, -
2.39e-66FFCP PHASE1:Hg19::chr3:165535021..165535029,-#_005d3c8122c7a4c7c5d9de2135f40160-, p@chr3:165535021..165535029
2.39e-66FFCP PHASE2:Hg19::chr3:85553737..85553767,+#_005d3c8122c7a4c7c5d9de2135f40160p1@AB646740, p1@AB646741, p1@AB646742, p1@AB646743
2.39e-66FFCP PHASE2:Hg19::chr7:111051726..111051739,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111051726..111051739, -
2.39e-66FFCP PHASE2:Hg19::chr17:4847813..4847819,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr17:4847813..4847819, +
2.39e-66FFCP PHASE1:Hg19::chr3:190999916..190999925,-#_005d3c8122c7a4c7c5d9de2135f40160p13@UTS2D
2.39e-66FFCP PHASE2:Hg19::chr3:190999951..190999959,-#_005d3c8122c7a4c7c5d9de2135f40160p15@UTS2D
2.39e-66FFCP PHASE1:Hg19::chr21:21703199..21703203,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:21703199..21703203, -
2.39e-66FFCP PHASE2:Hg19::chr5:92179437..92179443,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:92179437..92179443, +
2.39e-66FFCP PHASE2:Hg19::chr3:165535021..165535029,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:165535021..165535029, -
2.39e-66FFCP PHASE2:Hg19::chr13:80914790..80914795,-#_005d3c8122c7a4c7c5d9de2135f40160p41@SPRY2
2.39e-66FFCP PHASE2:Hg19::chr21:21703199..21703203,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:21703199..21703203, -
2.39e-66FFCP PHASE1:Hg19::chr8:59953375..59953393,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr8:59953375..59953393, -
2.39e-66FFCP PHASE2:Hg19::chr12:91218399..91218404,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr12:91218399..91218404, +
2.39e-66FFCP PHASE1:Hg19::chr3:111812180..111812186,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:111812180..111812186, +
2.39e-66FFCP PHASE1:Hg19::chr7:15802479..15802491,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:15802479..15802491, +
2.39e-66FFCP PHASE1:Hg19::chr2:150961763..150961789,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr2:150961763..150961789, -