Personal tools

UBERON:0001441

From FANTOM5_SSTAR

Jump to: navigation, search

Name:hindlimb skeleton
Namespace:FANTOM
Definition:"The collection of all skeletal elements in an hindlimb region." [UBERON:cjm]
Xrefs:
links:

AAO:0000217
EHDAA2:0002226
FMA:24144
OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA
VHOG:0001255
VSAO:0000152

XAO:0003062
Synonyms: "bones of lower limb" EXACT []
"hind limb skeleton" EXACT [XAO:0003062]
"hindlimb skeleton" EXACT [VHOG:0001255]
"lower limb skeleton" EXACT []
"ossa membri inferioris" EXACT [FMA:24140, FMA:TA]
"set of bones of lower limb" EXACT []
"skeleton of lower limb" EXACT [FMA:24140]
Comments:TOOD - find a home for: FMA:24140
Alt_id: UBERON:FMA_24140-MA_0000670
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004381(skeleton of limb),UBERON:0007273(pelvic appendage skeleton)
part_of:UBERON:0002103(hindlimb),UBERON:0012476(skeleton of pelvic complex)



Children

part of:UBERON:0000981 (femur),UBERON:0003464 (hindlimb bone),UBERON:0010885 (hindlimb cartilage element),UBERON:0010886 (hindlimb bone pre-cartilage condensation),UBERON:0015022 (hindlimb endochondral element),UBERON:0015052 (femur endochondral element)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001441 (hindlimb skeleton), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.4e-49FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_2a22346320884e386d61364af66cbb55p26@Myo18a
3.4e-49FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_2a22346320884e386d61364af66cbb55p26@Myo18a
4.96e-49FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_56770795c72eae1f32f3bd9827d95810p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_56770795c72eae1f32f3bd9827d95810p@chr2:32482372..32482381, +
4.96e-49FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_56770795c72eae1f32f3bd9827d95810p@chr8:75097542..75097549, +
4.96e-49FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_56770795c72eae1f32f3bd9827d95810p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_56770795c72eae1f32f3bd9827d95810p@chr9:21934585..21934591, -
4.96e-49FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_56770795c72eae1f32f3bd9827d95810p@chr8:75097542..75097549, +
3.15e-44FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_47a68d1f32a9159b124729fa4b70e416p@chr6:51525810..51525817, +
3.15e-44FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_47a68d1f32a9159b124729fa4b70e416p@chr6:51525810..51525817, +
9.78e-40FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_6c8d777d1c9363b6edd1b600fe2e385ep@chr19:4876870..4876880, -
9.78e-40FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_6c8d777d1c9363b6edd1b600fe2e385ep@chr19:4876870..4876880, -
1.15e-39FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_5d7ebb189cb574653963a4796def5deep@chr11:67063327..67063335, +
1.15e-39FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_5d7ebb189cb574653963a4796def5deep@chr6:4490674..4490679, +
1.15e-39FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_5d7ebb189cb574653963a4796def5deep@chr1:174140324..174140335, -
1.15e-39FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_5d7ebb189cb574653963a4796def5deep@chr11:67063327..67063335, +
1.15e-39FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_5d7ebb189cb574653963a4796def5deep@chr16:24096441..24096449, +
1.15e-39FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_5d7ebb189cb574653963a4796def5deep@chr16:24096441..24096449, +
1.15e-39FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_5d7ebb189cb574653963a4796def5dee+, p@chr6:4490674..4490679
1.15e-39FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_5d7ebb189cb574653963a4796def5deep@chr1:174140324..174140335, -
1.55e-39FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_40db5edd8c28bbead90d6c9ce31a2b80p@chr1:174143249..174143260, -
1.55e-39FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_40db5edd8c28bbead90d6c9ce31a2b80p@chr1:174143249..174143260, -
3.03e-39FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_0290f1f3535f6f3a5dcfd00baf02b2f9p@chr6:51525869..51525891, +
3.03e-39FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_0290f1f3535f6f3a5dcfd00baf02b2f9p@chr6:51525869..51525891, +
9.31e-39FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_f9f226a14251eadebb08df0db53a9009p3@Asb16
9.31e-39FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_f9f226a14251eadebb08df0db53a9009p3@Asb16
2.41e-35FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_5adc266d23b4e87e46e4e5a58f60acc1p@chr7:133604286..133604297, -
2.41e-35FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_5adc266d23b4e87e46e4e5a58f60acc1p@chr7:133604286..133604297, -
2.95e-35FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_a9415a81a177d1bc802071b5c8fb3447p5@Pla2g5
2.95e-35FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_a9415a81a177d1bc802071b5c8fb3447p5@Pla2g5
9.53e-34FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_72ae81de20e05ddc4deb8559275f60edp2@uc009mdq.1
9.53e-34FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_72ae81de20e05ddc4deb8559275f60edp2@uc009mdq.1
1.23e-33FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_910853a2dc4d8ca6b71a44baefa81be9p3@Mmp9
1.23e-33FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_910853a2dc4d8ca6b71a44baefa81be9p3@Mmp9
1.58e-33FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_5aa1dff8314bb40e495a893d988fbd8fp@chr1:166815111..166815121, -
1.58e-33FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_5aa1dff8314bb40e495a893d988fbd8fp2@Oscar
1.58e-33FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_5aa1dff8314bb40e495a893d988fbd8fp2@Oscar
1.58e-33FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_5aa1dff8314bb40e495a893d988fbd8fp@chr1:166815111..166815121, -
2.04e-33FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_d67465a61a88a2ada28ba667c567adc1p@chr11:75409652..75409664, +
2.04e-33FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_d67465a61a88a2ada28ba667c567adc1p4@Lipc
2.04e-33FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_d67465a61a88a2ada28ba667c567adc1+, p@chr11:75409652..75409664
2.04e-33FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_d67465a61a88a2ada28ba667c567adc1p4@Lipc
3.38e-33FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_e9d2cf08ef08b11a3833f3b3493d81f5p6@Sp7
3.38e-33FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_e9d2cf08ef08b11a3833f3b3493d81f5p6@Sp7
7.17e-33FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_57ec37625730cf4fc94e246aee06f594+, p@chr18:76271498..76271508
7.17e-33FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_57ec37625730cf4fc94e246aee06f594p@chr8:126415826..126415839, +
7.17e-33FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_57ec37625730cf4fc94e246aee06f594p@chr18:76271498..76271508, +
7.17e-33FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_57ec37625730cf4fc94e246aee06f594p@chr8:126415826..126415839, +
2.67e-30FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_8f7adaf7b4f548ad3fa95a7ae6a4500ep@chr2:32482387..32482399, +
2.67e-30FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_8f7adaf7b4f548ad3fa95a7ae6a4500ep@chr2:32482387..32482399, +
1.1e-29FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_ba3cc471641f29eb9d82e4ac9c618a00p@chr15:58649683..58649688, -
1.1e-29FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_ba3cc471641f29eb9d82e4ac9c618a00p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_ba3cc471641f29eb9d82e4ac9c618a00p@chr12:70396969..70396979, +
1.1e-29FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_ba3cc471641f29eb9d82e4ac9c618a00p@chr15:58649683..58649688, -
1.46e-29FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_0781977407e6ff0b26a4af86e0380879p@chr7:133590998..133591009, -
1.46e-29FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_0781977407e6ff0b26a4af86e0380879p@chr7:133590998..133591009, -
1.73e-29FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_1e26f87a2157f2749da867f12bb54f1ep2@Myoz3
1.73e-29FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_1e26f87a2157f2749da867f12bb54f1ep2@Myoz3
2.42e-29FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_16e25b8c925263edf1c37d56868adfb4p2@Myh4
2.42e-29FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_16e25b8c925263edf1c37d56868adfb4p2@Myh4
7.46e-29FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_5514e6fd44d59a6aa614779f67b8fed0p@chr1:57155729..57155740, -
7.46e-29FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_5514e6fd44d59a6aa614779f67b8fed0-, p@chr1:57155729..57155740
9.26e-29FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_0e95b5d8513d0ab1d04b03b7d2e41e00p1@Msmp
9.26e-29FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_0e95b5d8513d0ab1d04b03b7d2e41e00-, p@chr11:67056544..67056589
9.26e-29FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_0e95b5d8513d0ab1d04b03b7d2e41e00-, p@chr11:67056544..67056589
9.26e-29FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_0e95b5d8513d0ab1d04b03b7d2e41e00p1@Msmp
1.15e-28FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_e874305aac5f0ace2e0eb8b11d9b4995p@chr6:90552017..90552024, +
1.15e-28FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_e874305aac5f0ace2e0eb8b11d9b4995p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_e874305aac5f0ace2e0eb8b11d9b4995p@chrY:2858251..2858257, +
1.15e-28FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_e874305aac5f0ace2e0eb8b11d9b4995p@chr6:90552017..90552024, +
1.43e-28FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_50aa259db35f19f74c62ed209c3508d4p@chr6:34436258..34436292, +
1.43e-28FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_50aa259db35f19f74c62ed209c3508d4p@chr6:34436258..34436292, +
2.2e-28FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_61d2f1f8b0f396d868e56de447642954p@chr11:67069796..67069817, -
2.2e-28FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_61d2f1f8b0f396d868e56de447642954p@chr11:67069796..67069817, -
2.72e-28FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_06ebca357591b31f99dcb17332d03fe9p@chr8:107702369..107702386, +
2.72e-28FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_06ebca357591b31f99dcb17332d03fe9p@chr8:107702369..107702386, +
3.45e-28FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_d5f2d4858b2146787b6436e9673ade20p1@Siglec15
3.45e-28FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_d5f2d4858b2146787b6436e9673ade20p1@Siglec15
6.5e-28FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_5f94bb8a4e983eb53f9f11886a6db318p6@Atp2a1
6.5e-28FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_5f94bb8a4e983eb53f9f11886a6db318p6@Atp2a1
8.9e-28FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_99fe624fa4d704f1b6dabe1bc189d78fp7@Atp2a1
8.9e-28FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_99fe624fa4d704f1b6dabe1bc189d78fp7@Atp2a1
1.42e-27FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_f793a6ce470bd3f734d771245c345878p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_f793a6ce470bd3f734d771245c345878p@chr7:133600635..133600663, +
1.42e-27FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_f793a6ce470bd3f734d771245c345878p@chr7:133592162..133592188, -
1.42e-27FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_f793a6ce470bd3f734d771245c345878p@chr7:133600635..133600663, +
6.75e-27FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_22c1f26027e4eb01ee4d49a765b59c77p4@Sgca
6.75e-27FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_22c1f26027e4eb01ee4d49a765b59c77p4@Sgca
1.66e-26FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_e2e0c475d188f56bb4d06ac8dc933549p1@Mepe
1.66e-26FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_e2e0c475d188f56bb4d06ac8dc933549p1@Mepe
3.47e-26FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_467e029881145a40e56e5a315296c18ap@chr12:81581216..81581231, +
3.47e-26FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_467e029881145a40e56e5a315296c18ap2@Tm4sf19
3.47e-26FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_467e029881145a40e56e5a315296c18ap@chr12:81581216..81581231, +
3.47e-26FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_467e029881145a40e56e5a315296c18ap2@Tm4sf19
1.12e-25FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_51cbee31edf7ebeeda70136a7cdafbb0p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_51cbee31edf7ebeeda70136a7cdafbb0p@chr15:97806574..97806585, -
1.12e-25FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_51cbee31edf7ebeeda70136a7cdafbb0p5@Col11a2
1.12e-25FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_51cbee31edf7ebeeda70136a7cdafbb0p5@Col11a2
1.36e-25FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_db9d18fd3f55d296af157af00091deb0p2@Siglec15
1.36e-25FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_db9d18fd3f55d296af157af00091deb0p@chr2:180890942..180890956, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal structure of the paired, posterior appendages.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: differentiates_from lateral plate mesoderm (AAO:0010574) CHANGED TO: develops_from lateral plate mesoderm (UBERON:0003081)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.