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UBERON:0001467

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Name:shoulder
Namespace:FANTOM
Definition:"In human anatomy, the shoulder joint comprises the part of the body where the humerus attaches to the scapula. The shoulder refers to the group of structures in the region of the joint. It is made up of three bones: the clavicle (collarbone), the scapula (shoulder blade), and the humerus (upper arm bone) as well as associated muscles, ligaments and tendons. The articulations between the bones of the shoulder make up the shoulder joints. There are two kinds of cartilage in the joint. The first type is the white cartilage on the ends of the bones (called articular cartilage) which allows the bones to glide and move on each other. When this type of cartilage starts to wear out (a process called arthritis), the joint becomes painful and stiff. The labrum is a second kind of cartilage in the shoulder which is distinctly different from the articular cartilage. This cartilage is more fibrous or rigid than the cartilage on the ends of the ball and socket. Also, this cartilage is also found only around the socket where it is attached. The shoulder must be flexible for the wide range of motion required in the arms and hands and also strong enough to allow for actions such as lifting, pushing and pulling. The compromise between these two functions results in a large number of shoulder problems not faced by other joints such as the hip. [WP,unvetted]." [Wikipedia:Shoulder]
Xrefs:
links:

EFO:0003068
EHDAA2:0001834
EHDAA:4180
EHDAA:6228
EMAPA:17421
FMA:25202
GAID:60
galen:Shoulder
[1]
[2]
MA:0000038
MESH:A.01.378.800.750
ncithesaurus:Shoulder
OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA
SCTID:361103004

VHOG:0000342
Synonyms: "articulatio humeri" RELATED LATIN [Wikipedia:Shoulder]
"shoulder region" EXACT []
Comments:AO notes: In FMA, the shoulder is part of the pectoral girdle region. in MA, shoulder structures like shoulder joints, bones, nerves etc are part of the shoulder and the forelimb. E.g. humerus is a shoulder bone
Alt_id: UBERON:FMA_25202-MA_0000038
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000475(organism subdivision)
part_of:UBERON:0010708(pectoral complex)



Children

part of:UBERON:0001097 (axillary lymph node)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)

  • 1063-29H9 (accessory axillary lymph node, adult)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001467 (shoulder), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr15:98457111..98457118,+#_c845dbdcd65e4883ba02d29c8cc39823p@chr15:98457111..98457118, +
3.07e-86FFCP PHASE2:Mm9::chr12:93042811..93042816,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr12:93042811..93042816, -
3.07e-86FFCP PHASE2:Mm9::chr12:104978425..104978430,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr12:104978425..104978430, -
3.07e-86FFCP PHASE2:Mm9::chr4:32325858..32325865,+#_c845dbdcd65e4883ba02d29c8cc39823p18@Bach2
3.07e-86FFCP PHASE1:Mm9::chr15:98457111..98457118,+#_c845dbdcd65e4883ba02d29c8cc39823p@chr15:98457111..98457118, +
3.07e-86FFCP PHASE1:Mm9::chr12:114567506..114567507,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr12:114567506..114567507, -
3.07e-86FFCP PHASE1:Mm9::chr11:5405967..5405985,+#_c845dbdcd65e4883ba02d29c8cc39823p@chr11:5405967..5405985, +
3.07e-86FFCP PHASE2:Mm9::chr8:3918216..3918219,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr8:3918216..3918219, -
3.07e-86FFCP PHASE1:Mm9::chr10:73409774..73409819,+#_c845dbdcd65e4883ba02d29c8cc39823p@chr10:73409774..73409819, +
3.07e-86FFCP PHASE2:Mm9::chr12:114567506..114567507,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr12:114567506..114567507, -
3.07e-86FFCP PHASE2:Mm9::chr4:122604700..122604706,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr4:122604700..122604706, -
3.07e-86FFCP PHASE1:Mm9::chr17:37383896..37383899,+#_c845dbdcd65e4883ba02d29c8cc39823p2@ENSMUST00000172477
3.07e-86FFCP PHASE2:Mm9::chr10:73409774..73409819,+#_c845dbdcd65e4883ba02d29c8cc39823p@chr10:73409774..73409819, +
3.07e-86FFCP PHASE1:Mm9::chr4:122604700..122604706,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr4:122604700..122604706, -
3.07e-86FFCP PHASE1:Mm9::chr12:104978425..104978430,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr12:104978425..104978430, -
3.07e-86FFCP PHASE2:Mm9::chr17:37383896..37383899,+#_c845dbdcd65e4883ba02d29c8cc39823p2@ENSMUST00000172477
3.07e-86FFCP PHASE1:Mm9::chr4:32325858..32325865,+#_c845dbdcd65e4883ba02d29c8cc39823p18@Bach2
3.07e-86FFCP PHASE1:Mm9::chr8:3918216..3918219,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr8:3918216..3918219, -
3.07e-86FFCP PHASE2:Mm9::chr11:5405967..5405985,+#_c845dbdcd65e4883ba02d29c8cc39823p@chr11:5405967..5405985, +
3.07e-86FFCP PHASE1:Mm9::chr16:19235714..19235723,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr16:19235714..19235723, -
3.07e-86FFCP PHASE2:Mm9::chr15:98457062..98457072,+#_c845dbdcd65e4883ba02d29c8cc39823p@chr15:98457062..98457072, +
3.07e-86FFCP PHASE1:Mm9::chr12:93042811..93042816,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr12:93042811..93042816, -
3.07e-86FFCP PHASE2:Mm9::chr16:19235714..19235723,-#_c845dbdcd65e4883ba02d29c8cc39823p@chr16:19235714..19235723, -
3.07e-86FFCP PHASE1:Mm9::chr15:98457062..98457072,+#_c845dbdcd65e4883ba02d29c8cc39823p@chr15:98457062..98457072, +
2.74e-44FFCP PHASE1:Mm9::chr2:152582794..152582807,+#_138d57bfa8556de7936773ddb1bdd98fp@chr2:152582794..152582807, +
2.74e-44FFCP PHASE1:Mm9::chr4:130488147..130488154,+#_138d57bfa8556de7936773ddb1bdd98fp@chr4:130488147..130488154, +
2.74e-44FFCP PHASE2:Mm9::chr1:156901987..156901994,-#_138d57bfa8556de7936773ddb1bdd98fp@chr1:156901987..156901994, -
2.74e-44FFCP PHASE1:Mm9::chr1:156901987..156901994,-#_138d57bfa8556de7936773ddb1bdd98fp@chr1:156901987..156901994, -
2.74e-44FFCP PHASE2:Mm9::chr6:129628862..129628871,-#_138d57bfa8556de7936773ddb1bdd98fp@chr6:129628862..129628871, -
2.74e-44FFCP PHASE2:Mm9::chr4:130488147..130488154,+#_138d57bfa8556de7936773ddb1bdd98fp@chr4:130488147..130488154, +
2.74e-44FFCP PHASE1:Mm9::chr6:129628862..129628871,-#_138d57bfa8556de7936773ddb1bdd98fp@chr6:129628862..129628871, -
2.74e-44FFCP PHASE1:Mm9::chr6:127022920..127022928,+#_138d57bfa8556de7936773ddb1bdd98fp1@Fgf23
2.74e-44FFCP PHASE1:Mm9::chr15:100610674..100610678,+#_138d57bfa8556de7936773ddb1bdd98fp@chr15:100610674..100610678, +
2.74e-44FFCP PHASE2:Mm9::chr3:87316559..87316571,-#_138d57bfa8556de7936773ddb1bdd98fp@chr3:87316559..87316571, -
2.74e-44FFCP PHASE2:Mm9::chr15:100610674..100610678,+#_138d57bfa8556de7936773ddb1bdd98fp@chr15:100610674..100610678, +
2.74e-44FFCP PHASE2:Mm9::chr6:127022920..127022928,+#_138d57bfa8556de7936773ddb1bdd98fp1@Fgf23
2.74e-44FFCP PHASE1:Mm9::chr3:87316559..87316571,-#_138d57bfa8556de7936773ddb1bdd98fp@chr3:87316559..87316571, -
2.74e-44FFCP PHASE2:Mm9::chr2:152582794..152582807,+#_138d57bfa8556de7936773ddb1bdd98fp@chr2:152582794..152582807, +
7.47e-44FFCP PHASE2:Mm9::chr2:26524291..26524300,-#_add8541c636b2310567607e768c90ab1p@chr2:26524291..26524300, -
7.47e-44FFCP PHASE2:Mm9::chr17:73460572..73460579,+#_add8541c636b2310567607e768c90ab1p@chr17:73460572..73460579, +
7.47e-44FFCP PHASE1:Mm9::chr2:70769189..70769223,+#_add8541c636b2310567607e768c90ab1p@chr2:70769189..70769223, +
7.47e-44FFCP PHASE2:Mm9::chr1:69594451..69594464,-#_add8541c636b2310567607e768c90ab1p@chr1:69594451..69594464, -
7.47e-44FFCP PHASE2:Mm9::chr5:111607677..111607689,-#_add8541c636b2310567607e768c90ab1p@chr5:111607677..111607689, -
7.47e-44FFCP PHASE2:Mm9::chr2:70769189..70769223,+#_add8541c636b2310567607e768c90ab1p@chr2:70769189..70769223, +
7.47e-44FFCP PHASE2:Mm9::chr8:22042143..22042150,-#_add8541c636b2310567607e768c90ab1p1@Gm15056, p1@LOC100504014
7.47e-44FFCP PHASE1:Mm9::chr8:22042143..22042150,-#_add8541c636b2310567607e768c90ab1p1@Gm15056, p1@LOC100504014
7.47e-44FFCP PHASE2:Mm9::chrX:13200511..13200521,+#_add8541c636b2310567607e768c90ab1p@chrX:13200511..13200521, +
7.47e-44FFCP PHASE2:Mm9::chr17:73506745..73506750,+#_add8541c636b2310567607e768c90ab1p@chr17:73506745..73506750, +
7.47e-44FFCP PHASE1:Mm9::chrX:13200511..13200521,+#_add8541c636b2310567607e768c90ab1p@chrX:13200511..13200521, +
7.47e-44FFCP PHASE2:Mm9::chr13:83714297..83714301,+#_add8541c636b2310567607e768c90ab1p@chr13:83714297..83714301, +
7.47e-44FFCP PHASE1:Mm9::chr5:111607677..111607689,-#_add8541c636b2310567607e768c90ab1p@chr5:111607677..111607689, -
7.47e-44FFCP PHASE2:Mm9::chr1:156901880..156901891,-#_add8541c636b2310567607e768c90ab1p@chr1:156901880..156901891, -
7.47e-44FFCP PHASE1:Mm9::chr13:83714297..83714301,+#_add8541c636b2310567607e768c90ab1+, p@chr13:83714297..83714301
7.47e-44FFCP PHASE1:Mm9::chr17:73460572..73460579,+#_add8541c636b2310567607e768c90ab1p@chr17:73460572..73460579, +
7.47e-44FFCP PHASE2:Mm9::chrX:7157626..7157635,+#_add8541c636b2310567607e768c90ab1p3@Foxp3
7.47e-44FFCP PHASE1:Mm9::chr2:26524291..26524300,-#_add8541c636b2310567607e768c90ab1p@chr2:26524291..26524300, -
7.47e-44FFCP PHASE1:Mm9::chr1:69594451..69594464,-#_add8541c636b2310567607e768c90ab1p@chr1:69594451..69594464, -
7.47e-44FFCP PHASE1:Mm9::chrX:7157626..7157635,+#_add8541c636b2310567607e768c90ab1p3@Foxp3
7.47e-44FFCP PHASE1:Mm9::chr1:156901880..156901891,-#_add8541c636b2310567607e768c90ab1-, p@chr1:156901880..156901891
7.47e-44FFCP PHASE1:Mm9::chr17:73506745..73506750,+#_add8541c636b2310567607e768c90ab1p@chr17:73506745..73506750, +
2.87e-30FFCP PHASE1:Mm9::chr9:63685871..63685874,-#_ea30aadc378b1a23609126d6a33775a6p@chr9:63685871..63685874, -
2.87e-30FFCP PHASE1:Mm9::chr10:77555495..77555503,-#_ea30aadc378b1a23609126d6a33775a6p@chr10:77555495..77555503, -
2.87e-30FFCP PHASE1:Mm9::chr2:153750777..153750817,+#_ea30aadc378b1a23609126d6a33775a6p@chr2:153750777..153750817, +
2.87e-30FFCP PHASE2:Mm9::chr17:75917733..75917762,-#_ea30aadc378b1a23609126d6a33775a6p@chr17:75917733..75917762, -
2.87e-30FFCP PHASE2:Mm9::chr2:153750777..153750817,+#_ea30aadc378b1a23609126d6a33775a6p@chr2:153750777..153750817, +
2.87e-30FFCP PHASE2:Mm9::chr10:77555495..77555503,-#_ea30aadc378b1a23609126d6a33775a6p@chr10:77555495..77555503, -
2.87e-30FFCP PHASE1:Mm9::chr6:43026981..43026982,-#_ea30aadc378b1a23609126d6a33775a6p@chr6:43026981..43026982, -
2.87e-30FFCP PHASE1:Mm9::chr16:19236303..19236306,-#_ea30aadc378b1a23609126d6a33775a6-, p@chr16:19236303..19236306
2.87e-30FFCP PHASE2:Mm9::chr16:19236303..19236306,-#_ea30aadc378b1a23609126d6a33775a6p@chr16:19236303..19236306, -
2.87e-30FFCP PHASE2:Mm9::chr1:175421064..175421071,-#_ea30aadc378b1a23609126d6a33775a6p@chr1:175421064..175421071, -
2.87e-30FFCP PHASE2:Mm9::chr9:63685871..63685874,-#_ea30aadc378b1a23609126d6a33775a6-, p@chr9:63685871..63685874
2.87e-30FFCP PHASE2:Mm9::chr3:60276705..60276708,+#_ea30aadc378b1a23609126d6a33775a6p35@Mbnl1
2.87e-30FFCP PHASE1:Mm9::chr14:101862396..101862406,-#_ea30aadc378b1a23609126d6a33775a6p7@Tbc1d4
2.87e-30FFCP PHASE2:Mm9::chr14:101862396..101862406,-#_ea30aadc378b1a23609126d6a33775a6p7@Tbc1d4
2.87e-30FFCP PHASE2:Mm9::chr6:43026981..43026982,-#_ea30aadc378b1a23609126d6a33775a6p@chr6:43026981..43026982, -
2.87e-30FFCP PHASE1:Mm9::chr3:60276705..60276708,+#_ea30aadc378b1a23609126d6a33775a6p35@Mbnl1
2.87e-30FFCP PHASE1:Mm9::chr17:75917733..75917762,-#_ea30aadc378b1a23609126d6a33775a6p@chr17:75917733..75917762, -
2.87e-30FFCP PHASE1:Mm9::chr1:175421064..175421071,-#_ea30aadc378b1a23609126d6a33775a6p@chr1:175421064..175421071, -
5.62e-30FFCP PHASE1:Mm9::chr15:27700724..27700733,+#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr15:27700724..27700733, +
5.62e-30FFCP PHASE1:Mm9::chr10:96058243..96058251,-#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr10:96058243..96058251, -
5.62e-30FFCP PHASE2:Mm9::chr13:93865596..93865618,+#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr13:93865596..93865618, +
5.62e-30FFCP PHASE1:Mm9::chr13:93865596..93865618,+#_9b0d4d3c52f8717ff106d22e9a9bcb49+, p@chr13:93865596..93865618
5.62e-30FFCP PHASE2:Mm9::chr16:18588911..18588925,-#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr16:18588911..18588925, -
5.62e-30FFCP PHASE1:Mm9::chr1:152303107..152303115,-#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr1:152303107..152303115, -
5.62e-30FFCP PHASE1:Mm9::chr1:69595291..69595300,-#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr1:69595291..69595300, -
5.62e-30FFCP PHASE1:Mm9::chr16:18588911..18588925,-#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr16:18588911..18588925, -
5.62e-30FFCP PHASE2:Mm9::chr15:27700724..27700733,+#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr15:27700724..27700733, +
5.62e-30FFCP PHASE2:Mm9::chr17:65245146..65245162,+#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr17:65245146..65245162, +
5.62e-30FFCP PHASE2:Mm9::chr5:68157953..68157957,-#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr5:68157953..68157957, -
5.62e-30FFCP PHASE2:Mm9::chr10:96058243..96058251,-#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr10:96058243..96058251, -
5.62e-30FFCP PHASE2:Mm9::chr1:69595291..69595300,-#_9b0d4d3c52f8717ff106d22e9a9bcb49-, p@chr1:69595291..69595300
5.62e-30FFCP PHASE2:Mm9::chrX:7156827..7156838,+#_9b0d4d3c52f8717ff106d22e9a9bcb49p2@Foxp3
5.62e-30FFCP PHASE1:Mm9::chrX:7156827..7156838,+#_9b0d4d3c52f8717ff106d22e9a9bcb49p2@Foxp3
5.62e-30FFCP PHASE1:Mm9::chr12:3463400..3463409,+#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr12:3463400..3463409, +
5.62e-30FFCP PHASE1:Mm9::chr5:68157953..68157957,-#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr5:68157953..68157957, -
5.62e-30FFCP PHASE2:Mm9::chr1:152303107..152303115,-#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr1:152303107..152303115, -
5.62e-30FFCP PHASE1:Mm9::chr17:65245146..65245162,+#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr17:65245146..65245162, +
5.62e-30FFCP PHASE2:Mm9::chr12:3463400..3463409,+#_9b0d4d3c52f8717ff106d22e9a9bcb49p@chr12:3463400..3463409, +
1.1e-29FFCP PHASE1:Mm9::chr11:75828956..75828969,-#_8dad571235c7b24b8469aaf8fe2cb4b1p@chr11:75828956..75828969, -
1.1e-29FFCP PHASE1:Mm9::chr16:15705318..15705342,+#_8dad571235c7b24b8469aaf8fe2cb4b1p@chr16:15705318..15705342, +