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UBERON:0001556

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Name:lower urinary tract
Namespace:FANTOM
Definition:"Subdivision of urinary system which consists of the urinary bladder and the urethra." [FMA:45659]
Xrefs:
links:

FMA:45659
galen:LowerUrinaryTract
MA:0002636

SCTID:181420004
Alt_id: UBERON:FMA_45659-MA_0002636
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0006554(urinary system structure)
part_of:UBERON:0001008(renal system)



Children

part of:UBERON:0000057 (urethra),UBERON:0001255 (urinary bladder),CL:1000600 (lower urinary tract cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001556 (lower urinary tract), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr15:99673979..99673984,+#_04efdebd7ddf5a36c16380bc827c0a40p27@SYNM
1.55e-98FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr15:101282110..101282113, +
1.55e-98FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_04efdebd7ddf5a36c16380bc827c0a40p2@ENST00000427341
1.55e-98FFCP PHASE2:Hg19::chr5:148796190..148796191,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr5:148796190..148796191, +
1.55e-98FFCP PHASE1:Hg19::chr5:148796190..148796191,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr5:148796190..148796191, +
1.55e-98FFCP PHASE2:Hg19::chr17:3808512..3808513,-#_04efdebd7ddf5a36c16380bc827c0a40p@chr17:3808512..3808513, -
1.55e-98FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr15:101282110..101282113, +
1.55e-98FFCP PHASE1:Hg19::chr17:3808512..3808513,-#_04efdebd7ddf5a36c16380bc827c0a40p@chr17:3808512..3808513, -
1.55e-98FFCP PHASE2:Hg19::chr15:99673979..99673984,+#_04efdebd7ddf5a36c16380bc827c0a40p27@SYNM
1.55e-98FFCP PHASE1:Hg19::chr9:125155637..125155639,+#_04efdebd7ddf5a36c16380bc827c0a40p@chr9:125155637..125155639, +
1.55e-98FFCP PHASE1:Hg19::chr1:184801068..184801075,-#_04efdebd7ddf5a36c16380bc827c0a40p@chr1:184801068..184801075, -
1.55e-98FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_04efdebd7ddf5a36c16380bc827c0a40p2@ENST00000427341
1.55e-98FFCP PHASE2:Hg19::chr1:184801068..184801075,-#_04efdebd7ddf5a36c16380bc827c0a40p@chr1:184801068..184801075, -
1.55e-98FFCP PHASE2:Hg19::chr9:125155637..125155639,+#_04efdebd7ddf5a36c16380bc827c0a40+, p@chr9:125155637..125155639
3.07e-86FFCP PHASE1:Mm9::chr10:77520043..77520048,+#_337cba022326c0967d1013fd253cd7e3p@chr10:77520043..77520048, +
3.07e-86FFCP PHASE2:Mm9::chr17:24078882..24078896,+#_337cba022326c0967d1013fd253cd7e3p2@Sbp
3.07e-86FFCP PHASE2:Mm9::chr9:74005044..74005065,+#_337cba022326c0967d1013fd253cd7e3p@chr9:74005044..74005065, +
3.07e-86FFCP PHASE2:Mm9::chr18:44429795..44429800,+#_337cba022326c0967d1013fd253cd7e3p3@Npy6r
3.07e-86FFCP PHASE2:Mm9::chr9:109794961..109794968,-#_337cba022326c0967d1013fd253cd7e3p@chr9:109794961..109794968, -
3.07e-86FFCP PHASE1:Mm9::chr7:31388578..31388584,-#_337cba022326c0967d1013fd253cd7e3p@chr7:31388578..31388584, -
3.07e-86FFCP PHASE2:Mm9::chr14:68331267..68331286,-#_337cba022326c0967d1013fd253cd7e3p@chr14:68331267..68331286, -
3.07e-86FFCP PHASE1:Mm9::chr12:80992302..80992309,+#_337cba022326c0967d1013fd253cd7e3p@chr12:80992302..80992309, +
3.07e-86FFCP PHASE1:Mm9::chr9:74005044..74005065,+#_337cba022326c0967d1013fd253cd7e3p@chr9:74005044..74005065, +
3.07e-86FFCP PHASE1:Mm9::chr15:36485068..36485103,-#_337cba022326c0967d1013fd253cd7e3p@chr15:36485068..36485103, -
3.07e-86FFCP PHASE2:Mm9::chr10:61188929..61188936,+#_337cba022326c0967d1013fd253cd7e3+, p@chr10:61188929..61188936
3.07e-86FFCP PHASE2:Mm9::chr19:34791339..34791346,-#_337cba022326c0967d1013fd253cd7e3p@chr19:34791339..34791346, -
3.07e-86FFCP PHASE1:Mm9::chr9:109794961..109794968,-#_337cba022326c0967d1013fd253cd7e3p@chr9:109794961..109794968, -
3.07e-86FFCP PHASE1:Mm9::chr19:58073599..58073605,+#_337cba022326c0967d1013fd253cd7e3p@chr19:58073599..58073605, +
3.07e-86FFCP PHASE1:Mm9::chr17:24078882..24078896,+#_337cba022326c0967d1013fd253cd7e3p2@Sbp
3.07e-86FFCP PHASE2:Mm9::chr12:80992302..80992309,+#_337cba022326c0967d1013fd253cd7e3p@chr12:80992302..80992309, +
3.07e-86FFCP PHASE2:Mm9::chr15:36485068..36485103,-#_337cba022326c0967d1013fd253cd7e3p@chr15:36485068..36485103, -
3.07e-86FFCP PHASE2:Mm9::chr19:58073599..58073605,+#_337cba022326c0967d1013fd253cd7e3p@chr19:58073599..58073605, +
3.07e-86FFCP PHASE2:Mm9::chr10:77520043..77520048,+#_337cba022326c0967d1013fd253cd7e3p@chr10:77520043..77520048, +
3.07e-86FFCP PHASE2:Mm9::chr7:31388578..31388584,-#_337cba022326c0967d1013fd253cd7e3p@chr7:31388578..31388584, -
3.07e-86FFCP PHASE2:Mm9::chr15:84847637..84847642,+#_337cba022326c0967d1013fd253cd7e3p3@Upk3a
3.07e-86FFCP PHASE1:Mm9::chr19:34791339..34791346,-#_337cba022326c0967d1013fd253cd7e3p@chr19:34791339..34791346, -
3.07e-86FFCP PHASE1:Mm9::chr11:89595040..89595050,-#_337cba022326c0967d1013fd253cd7e3p@chr11:89595040..89595050, -
3.07e-86FFCP PHASE1:Mm9::chr18:44429795..44429800,+#_337cba022326c0967d1013fd253cd7e3p3@Npy6r
3.07e-86FFCP PHASE2:Mm9::chr14:29722238..29722242,-#_337cba022326c0967d1013fd253cd7e3p@chr14:29722238..29722242, -
3.07e-86FFCP PHASE1:Mm9::chr10:61188929..61188936,+#_337cba022326c0967d1013fd253cd7e3p@chr10:61188929..61188936, +
3.07e-86FFCP PHASE1:Mm9::chr14:29722238..29722242,-#_337cba022326c0967d1013fd253cd7e3p@chr14:29722238..29722242, -
3.07e-86FFCP PHASE1:Mm9::chr15:84847637..84847642,+#_337cba022326c0967d1013fd253cd7e3p3@Upk3a
3.07e-86FFCP PHASE1:Mm9::chr14:68331267..68331286,-#_337cba022326c0967d1013fd253cd7e3p@chr14:68331267..68331286, -
3.07e-86FFCP PHASE2:Mm9::chr11:89595040..89595050,-#_337cba022326c0967d1013fd253cd7e3p@chr11:89595040..89595050, -
2.74e-50FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_12c0c4a90b4b20c598d0e653ae84e8d9p26@LINC00340
2.74e-50FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21588091..21588098, -
2.74e-50FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr3:13992334..13992338, -
2.74e-50FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr3:13992334..13992338, -
2.74e-50FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr21:39627877..39627884, +
2.74e-50FFCP PHASE2:Hg19::chr4:186567032..186567041,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr4:186567032..186567041, -
2.74e-50FFCP PHASE1:Hg19::chr4:186567032..186567041,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr4:186567032..186567041, -
2.74e-50FFCP PHASE2:Hg19::chr16:15850261..15850268,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr16:15850261..15850268, -
2.74e-50FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21664489..21664494, +
2.74e-50FFCP PHASE1:Hg19::chr16:15850261..15850268,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr16:15850261..15850268, -
2.74e-50FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_12c0c4a90b4b20c598d0e653ae84e8d9p26@LINC00340
2.74e-50FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21383702..21383704, +
2.74e-50FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21383702..21383704, +
2.74e-50FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr21:39627877..39627884, +
2.74e-50FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21588091..21588098, -
2.74e-50FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_12c0c4a90b4b20c598d0e653ae84e8d9p@chr6:21664489..21664494, +
4.52e-50FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_a7422ae199baa236d81cb27ecd9e7d99p@chr6:21876977..21876981, +
4.52e-50FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_a7422ae199baa236d81cb27ecd9e7d99p@chr1:233430709..233430711, +
4.52e-50FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_a7422ae199baa236d81cb27ecd9e7d99p@chr6:21876977..21876981, +
4.52e-50FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_a7422ae199baa236d81cb27ecd9e7d99p@chr1:233430709..233430711, +
2.74e-44FFCP PHASE1:Mm9::chr2:135755239..135755248,+#_ee9d66c544e7ff7a546a7b105283095ep@chr2:135755239..135755248, +
2.74e-44FFCP PHASE1:Mm9::chr7:31391935..31391967,+#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31391935..31391967, +
2.74e-44FFCP PHASE1:Mm9::chr10:76337225..76337243,-#_ee9d66c544e7ff7a546a7b105283095ep@chr10:76337225..76337243, -
2.74e-44FFCP PHASE1:Mm9::chr9:48260437..48260446,+#_ee9d66c544e7ff7a546a7b105283095ep@chr9:48260437..48260446, +
2.74e-44FFCP PHASE2:Mm9::chr4:53416435..53416446,-#_ee9d66c544e7ff7a546a7b105283095ep1@ENSMUST00000154377
2.74e-44FFCP PHASE2:Mm9::chr7:31388822..31388831,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388822..31388831, -
2.74e-44FFCP PHASE2:Mm9::chr9:48260437..48260446,+#_ee9d66c544e7ff7a546a7b105283095ep@chr9:48260437..48260446, +
2.74e-44FFCP PHASE1:Mm9::chr4:117650200..117650211,+#_ee9d66c544e7ff7a546a7b105283095ep@chr4:117650200..117650211, +
2.74e-44FFCP PHASE1:Mm9::chr2:35519156..35519171,+#_ee9d66c544e7ff7a546a7b105283095ep@chr2:35519156..35519171, +
2.74e-44FFCP PHASE1:Mm9::chr16:34922180..34922189,+#_ee9d66c544e7ff7a546a7b105283095ep@chr16:34922180..34922189, +
2.74e-44FFCP PHASE2:Mm9::chr2:35519156..35519171,+#_ee9d66c544e7ff7a546a7b105283095ep@chr2:35519156..35519171, +
2.74e-44FFCP PHASE1:Mm9::chr16:38783715..38783726,-#_ee9d66c544e7ff7a546a7b105283095e-, p@chr16:38783715..38783726
2.74e-44FFCP PHASE1:Mm9::chr18:44429732..44429737,+#_ee9d66c544e7ff7a546a7b105283095ep2@Npy6r
2.74e-44FFCP PHASE1:Mm9::chr4:53416435..53416446,-#_ee9d66c544e7ff7a546a7b105283095ep1@ENSMUST00000154377
2.74e-44FFCP PHASE2:Mm9::chr7:31390216..31390224,-#_ee9d66c544e7ff7a546a7b105283095e-, p@chr7:31390216..31390224
2.74e-44FFCP PHASE2:Mm9::chr16:44943814..44943823,+#_ee9d66c544e7ff7a546a7b105283095ep4@Cd200r3
2.74e-44FFCP PHASE2:Mm9::chr5:92827077..92827083,+#_ee9d66c544e7ff7a546a7b105283095ep@chr5:92827077..92827083, +
2.74e-44FFCP PHASE1:Mm9::chr7:31388597..31388604,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388597..31388604, -
2.74e-44FFCP PHASE2:Mm9::chr16:34922180..34922189,+#_ee9d66c544e7ff7a546a7b105283095ep@chr16:34922180..34922189, +
2.74e-44FFCP PHASE2:Mm9::chr5:87332887..87332894,+#_ee9d66c544e7ff7a546a7b105283095ep@chr5:87332887..87332894, +
2.74e-44FFCP PHASE2:Mm9::chr16:38783715..38783726,-#_ee9d66c544e7ff7a546a7b105283095ep@chr16:38783715..38783726, -
2.74e-44FFCP PHASE2:Mm9::chr2:135755239..135755248,+#_ee9d66c544e7ff7a546a7b105283095ep@chr2:135755239..135755248, +
2.74e-44FFCP PHASE2:Mm9::chr10:77520022..77520033,+#_ee9d66c544e7ff7a546a7b105283095ep@chr10:77520022..77520033, +
2.74e-44FFCP PHASE2:Mm9::chr7:31388537..31388547,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388537..31388547, -
2.74e-44FFCP PHASE2:Mm9::chr10:76337225..76337243,-#_ee9d66c544e7ff7a546a7b105283095ep@chr10:76337225..76337243, -
2.74e-44FFCP PHASE2:Mm9::chr4:117650200..117650211,+#_ee9d66c544e7ff7a546a7b105283095ep@chr4:117650200..117650211, +
2.74e-44FFCP PHASE2:Mm9::chr7:31391935..31391967,+#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31391935..31391967, +
2.74e-44FFCP PHASE1:Mm9::chr7:31388822..31388831,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31388822..31388831, -
2.74e-44FFCP PHASE1:Mm9::chr4:41154091..41154099,-#_ee9d66c544e7ff7a546a7b105283095ep@chr4:41154091..41154099, -
2.74e-44FFCP PHASE2:Mm9::chr18:44429732..44429737,+#_ee9d66c544e7ff7a546a7b105283095ep2@Npy6r
2.74e-44FFCP PHASE1:Mm9::chr5:87332887..87332894,+#_ee9d66c544e7ff7a546a7b105283095ep@chr5:87332887..87332894, +
2.74e-44FFCP PHASE1:Mm9::chr15:36485291..36485294,-#_ee9d66c544e7ff7a546a7b105283095ep2@Snx31
2.74e-44FFCP PHASE2:Mm9::chr4:41154091..41154099,-#_ee9d66c544e7ff7a546a7b105283095ep@chr4:41154091..41154099, -
2.74e-44FFCP PHASE1:Mm9::chr10:77520022..77520033,+#_ee9d66c544e7ff7a546a7b105283095ep@chr10:77520022..77520033, +
2.74e-44FFCP PHASE2:Mm9::chr19:34791405..34791413,-#_ee9d66c544e7ff7a546a7b105283095ep@chr19:34791405..34791413, -
2.74e-44FFCP PHASE1:Mm9::chr7:31390216..31390224,-#_ee9d66c544e7ff7a546a7b105283095ep@chr7:31390216..31390224, -