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UBERON:0001557

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Name:upper respiratory tract
Namespace:FANTOM
Definition:"Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
Xrefs:
links:

EHDAA2:0002136
EMAPA:17669
FMA:45661
[1]
[2]
MA:0000442
OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ
SCTID:361381009

VHOG:0000406
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_45661-MA_0000442
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000072(segment of respiratory tract)



Children

part of:UBERON:0001707 (nasal cavity),UBERON:0004814 (upper respiratory tract epithelium),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015787 (upper respiratory conduit)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001557 (upper respiratory tract), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.04e-92FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_893f41b6bd87a40fefcacac4cbe37154p@chr16:87869864..87869878, +
1.04e-92FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_893f41b6bd87a40fefcacac4cbe37154p@chr17:79098633..79098647, -
1.04e-92FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_893f41b6bd87a40fefcacac4cbe37154p1@AK297894
1.04e-92FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_893f41b6bd87a40fefcacac4cbe37154p2@AK297894
1.04e-92FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_893f41b6bd87a40fefcacac4cbe37154p9@ALPP
1.04e-92FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_893f41b6bd87a40fefcacac4cbe37154p1@ENST00000441266
1.04e-92FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_893f41b6bd87a40fefcacac4cbe37154p6@ALPP
1.04e-92FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_893f41b6bd87a40fefcacac4cbe37154p@chr2:53732986..53732989, -
1.04e-92FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_893f41b6bd87a40fefcacac4cbe37154p1@AK297894
1.04e-92FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_893f41b6bd87a40fefcacac4cbe37154p2@AK297894
1.04e-92FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_893f41b6bd87a40fefcacac4cbe37154p9@ALPP
1.04e-92FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_893f41b6bd87a40fefcacac4cbe37154p1@ENST00000441266
1.04e-92FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_893f41b6bd87a40fefcacac4cbe37154p6@ALPP
1.04e-92FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_893f41b6bd87a40fefcacac4cbe37154p7@uc003ysb.2
1.04e-92FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_893f41b6bd87a40fefcacac4cbe37154p@chr16:87869864..87869878, +
1.04e-92FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_893f41b6bd87a40fefcacac4cbe37154p@chr2:53732986..53732989, -
1.04e-92FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_893f41b6bd87a40fefcacac4cbe37154p7@uc003ysb.2
1.04e-92FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_893f41b6bd87a40fefcacac4cbe37154p@chr17:79098633..79098647, -
1.52e-83FFCP PHASE2:Hg19::chr7:54879838..54879849,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr7:54879838..54879849, -
1.52e-83FFCP PHASE2:Hg19::chr8:128265552..128265583,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr8:128265552..128265583, -
1.52e-83FFCP PHASE2:Hg19::chrX:86868675..86868686,+#_eef84bd4435712cbdd9b6c40866b2a9dp@chrX:86868675..86868686, +
1.52e-83FFCP PHASE1:Hg19::chr2:233246656..233246666,+#_eef84bd4435712cbdd9b6c40866b2a9dp8@ALPP
1.52e-83FFCP PHASE1:Hg19::chr4:123838984..123838995,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr4:123838984..123838995, -
1.52e-83FFCP PHASE1:Hg19::chr4:134184041..134184064,-#_eef84bd4435712cbdd9b6c40866b2a9dp2@ENST00000507172
1.52e-83FFCP PHASE1:Hg19::chr7:54879838..54879849,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr7:54879838..54879849, -
1.52e-83FFCP PHASE2:Hg19::chr2:233246656..233246666,+#_eef84bd4435712cbdd9b6c40866b2a9dp8@ALPP
1.52e-83FFCP PHASE1:Hg19::chr8:128265552..128265583,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr8:128265552..128265583, -
1.52e-83FFCP PHASE2:Hg19::chr4:123838984..123838995,-#_eef84bd4435712cbdd9b6c40866b2a9dp@chr4:123838984..123838995, -
1.52e-83FFCP PHASE2:Hg19::chr4:134184041..134184064,-#_eef84bd4435712cbdd9b6c40866b2a9dp2@ENST00000507172
1.52e-83FFCP PHASE1:Hg19::chrX:86868675..86868686,+#_eef84bd4435712cbdd9b6c40866b2a9dp@chrX:86868675..86868686, +
1.67e-83FFCP PHASE1:Hg19::chr2:233246988..233246995,+#_a6770af99d7933b119e7e30d7f6d0784p@chr2:233246988..233246995, +
1.67e-83FFCP PHASE2:Hg19::chr2:233246988..233246995,+#_a6770af99d7933b119e7e30d7f6d0784p@chr2:233246988..233246995, +
3.6e-83FFCP PHASE2:Hg19::chr19:3603296..3603307,+#_3295f5853cb0174a56656990cd46b8d8p@chr19:3603296..3603307, +
3.6e-83FFCP PHASE2:Hg19::chr8:128269736..128269748,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128269736..128269748, -
3.6e-83FFCP PHASE2:Hg19::chr8:128270240..128270252,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128270240..128270252, -
3.6e-83FFCP PHASE2:Hg19::chr8:128270857..128270869,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128270857..128270869, -
3.6e-83FFCP PHASE1:Hg19::chr19:3603296..3603307,+#_3295f5853cb0174a56656990cd46b8d8p@chr19:3603296..3603307, +
3.6e-83FFCP PHASE1:Hg19::chr8:128269736..128269748,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128269736..128269748, -
3.6e-83FFCP PHASE1:Hg19::chr8:128270240..128270252,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128270240..128270252, -
3.6e-83FFCP PHASE1:Hg19::chr8:128270857..128270869,-#_3295f5853cb0174a56656990cd46b8d8p@chr8:128270857..128270869, -
1.46e-82FFCP PHASE2:Hg19::chr4:134183951..134183960,-#_70da3fd13779de8a17384e21d395cdb6p4@ENST00000507172
1.46e-82FFCP PHASE1:Hg19::chr4:134183951..134183960,-#_70da3fd13779de8a17384e21d395cdb6p4@ENST00000507172
4.83e-76FFCP PHASE1:Hg19::chr11:3147806..3147811,-#_2b8d90cb40da8ac4458845024e076a11p7@OSBPL5
4.83e-76FFCP PHASE1:Hg19::chr1:207262293..207262306,+#_2b8d90cb40da8ac4458845024e076a11p17@C4BPB
4.83e-76FFCP PHASE1:Hg19::chr2:233243233..233243245,+#_2b8d90cb40da8ac4458845024e076a11p5@ALPP
4.83e-76FFCP PHASE2:Hg19::chr2:233243233..233243245,+#_2b8d90cb40da8ac4458845024e076a11p5@ALPP
4.83e-76FFCP PHASE2:Hg19::chr11:3147806..3147811,-#_2b8d90cb40da8ac4458845024e076a11p7@OSBPL5
4.83e-76FFCP PHASE2:Hg19::chr1:207262293..207262306,+#_2b8d90cb40da8ac4458845024e076a11p17@C4BPB
6.84e-76FFCP PHASE1:Hg19::chr11:4154830..4154835,+#_61e3fac8600fd66ccb1d8c1f59214e5bp@chr11:4154830..4154835, +
6.84e-76FFCP PHASE2:Hg19::chr11:4154830..4154835,+#_61e3fac8600fd66ccb1d8c1f59214e5bp@chr11:4154830..4154835, +
8.88e-76FFCP PHASE2:Hg19::chr8:128433201..128433228,-#_25d68900072ac2e09d5e7927c1ce0faap1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1
8.88e-76FFCP PHASE1:Hg19::chr8:128433201..128433228,-#_25d68900072ac2e09d5e7927c1ce0faap1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1
1.06e-75FFCP PHASE1:Hg19::chr8:128270900..128270912,-#_2cfe99c1be0bb3849b5ca4142430c6a8p@chr8:128270900..128270912, -
1.06e-75FFCP PHASE2:Hg19::chr8:128270900..128270912,-#_2cfe99c1be0bb3849b5ca4142430c6a8p@chr8:128270900..128270912, -
1.15e-75FFCP PHASE1:Hg19::chr4:173884019..173884038,+#_468fa143f4d0a3f5d92db2b2fcc960c9p@chr4:173884019..173884038, +
1.15e-75FFCP PHASE2:Hg19::chr4:173884019..173884038,+#_468fa143f4d0a3f5d92db2b2fcc960c9p@chr4:173884019..173884038, +
1.37e-75FFCP PHASE2:Hg19::chr4:173883984..173884005,+#_0f29d4b9dcae6c0c688c945c2bdfa47ap@chr4:173883984..173884005, +
1.37e-75FFCP PHASE1:Hg19::chr4:173883984..173884005,+#_0f29d4b9dcae6c0c688c945c2bdfa47ap@chr4:173883984..173884005, +
1.78e-75FFCP PHASE1:Hg19::chr2:10529417..10529422,+#_7d2b6f1aa743800268d505351d0a21a8p@chr2:10529417..10529422, +
1.78e-75FFCP PHASE2:Hg19::chr2:10529417..10529422,+#_7d2b6f1aa743800268d505351d0a21a8p@chr2:10529417..10529422, +
1.2e-73FFCP PHASE2:Hg19::chr8:128231737..128231742,-#_40e4882fb656d369fa9889508cba2ff8p14@ENST00000500112, p14@uc003ysa.1
1.2e-73FFCP PHASE1:Hg19::chr8:128231737..128231742,-#_40e4882fb656d369fa9889508cba2ff8p14@ENST00000500112, p14@uc003ysa.1
1.3e-73FFCP PHASE1:Hg19::chr8:143782507..143782516,+#_a370c0c92384919e08b14dcea8047f0dp@chr8:143782507..143782516, +
1.3e-73FFCP PHASE2:Hg19::chr8:143782507..143782516,+#_a370c0c92384919e08b14dcea8047f0dp@chr8:143782507..143782516, +
1.92e-73FFCP PHASE2:Hg19::chr2:233246589..233246598,+#_99f2861249279f1d39669f6e6c17a183p12@ALPP
1.92e-73FFCP PHASE1:Hg19::chr2:233246589..233246598,+#_99f2861249279f1d39669f6e6c17a183p12@ALPP
2.11e-73FFCP PHASE1:Hg19::chr16:87874486..87874492,-#_37cda8b4fe7664d98ca7de0941553096p@chr16:87874486..87874492, -
2.11e-73FFCP PHASE2:Hg19::chr16:87874486..87874492,-#_37cda8b4fe7664d98ca7de0941553096p@chr16:87874486..87874492, -
3.12e-73FFCP PHASE1:Hg19::chr2:234590530..234590553,+#_13313347acace1e384233347bc280d0bp1@UGT1A7
3.12e-73FFCP PHASE2:Hg19::chr2:234590530..234590553,+#_13313347acace1e384233347bc280d0bp1@UGT1A7
3.71e-73FFCP PHASE2:Hg19::chr8:128270948..128270958,-#_7c75b968a6f05c5df5577302c2e5feb1p@chr8:128270948..128270958, -
3.71e-73FFCP PHASE2:Hg19::chr5:370156..370169,+#_7c75b968a6f05c5df5577302c2e5feb1p@chr5:370156..370169, +
3.71e-73FFCP PHASE1:Hg19::chr8:128270948..128270958,-#_7c75b968a6f05c5df5577302c2e5feb1p@chr8:128270948..128270958, -
3.71e-73FFCP PHASE1:Hg19::chr5:370156..370169,+#_7c75b968a6f05c5df5577302c2e5feb1p@chr5:370156..370169, +
1.97e-72FFCP PHASE1:Hg19::chr16:87869840..87869849,+#_4f84c3b585076afcdde9cd639432af7ap@chr16:87869840..87869849, +
1.97e-72FFCP PHASE1:Hg19::chr2:233246442..233246451,+#_4f84c3b585076afcdde9cd639432af7ap16@ALPP
1.97e-72FFCP PHASE2:Hg19::chr2:233246442..233246451,+#_4f84c3b585076afcdde9cd639432af7ap16@ALPP
1.97e-72FFCP PHASE1:Hg19::chr9:84380797..84380800,+#_4f84c3b585076afcdde9cd639432af7ap@chr9:84380797..84380800, +
1.97e-72FFCP PHASE2:Hg19::chr9:84380797..84380800,+#_4f84c3b585076afcdde9cd639432af7a+, p@chr9:84380797..84380800
1.97e-72FFCP PHASE2:Hg19::chr16:87869840..87869849,+#_4f84c3b585076afcdde9cd639432af7a+, p@chr16:87869840..87869849
8.65e-70FFCP PHASE2:Hg19::chr4:134076121..134076131,+#_2f445531719a879d24abe5172f9c7c62p15@PCDH10
8.65e-70FFCP PHASE1:Hg19::chr17:9745568..9745583,+#_2f445531719a879d24abe5172f9c7c62p8@GLP2R
8.65e-70FFCP PHASE1:Hg19::chr2:233243964..233243976,+#_2f445531719a879d24abe5172f9c7c62p@chr2:233243964..233243976, +
8.65e-70FFCP PHASE1:Hg19::chr2:233246828..233246839,+#_2f445531719a879d24abe5172f9c7c62p4@ALPP
8.65e-70FFCP PHASE1:Hg19::chr4:134076121..134076131,+#_2f445531719a879d24abe5172f9c7c62p15@PCDH10
8.65e-70FFCP PHASE1:Hg19::chr5:147582537..147582549,+#_2f445531719a879d24abe5172f9c7c62p4@SPINK6
8.65e-70FFCP PHASE2:Hg19::chr17:9745568..9745583,+#_2f445531719a879d24abe5172f9c7c62p8@GLP2R
8.65e-70FFCP PHASE2:Hg19::chr2:233243964..233243976,+#_2f445531719a879d24abe5172f9c7c62p@chr2:233243964..233243976, +
8.65e-70FFCP PHASE2:Hg19::chr2:233246828..233246839,+#_2f445531719a879d24abe5172f9c7c62p4@ALPP
8.65e-70FFCP PHASE2:Hg19::chr5:147582537..147582549,+#_2f445531719a879d24abe5172f9c7c62p4@SPINK6
9.37e-70FFCP PHASE2:Hg19::chr8:128231456..128231465,-#_ad75d9b21f266c435b881d318e97def2p13@ENST00000500112, p13@uc003ysa.1
9.37e-70FFCP PHASE1:Hg19::chr8:128231456..128231465,-#_ad75d9b21f266c435b881d318e97def2p13@ENST00000500112, p13@uc003ysa.1
1.02e-69FFCP PHASE1:Hg19::chr1:207262478..207262493,+#_441a58d71d76058a11c525ce90ea48e7p14@C4BPB
1.02e-69FFCP PHASE2:Hg19::chr1:207262478..207262493,+#_441a58d71d76058a11c525ce90ea48e7p14@C4BPB
1.29e-69FFCP PHASE1:Hg19::chr2:233321333..233321358,+#_7996141dc0e4652c3d74435722bb8331p@chr2:233321333..233321358, +
1.29e-69FFCP PHASE1:Hg19::chr2:233324211..233324229,-#_7996141dc0e4652c3d74435722bb8331p@chr2:233324211..233324229, -
1.29e-69FFCP PHASE2:Hg19::chr2:233321333..233321358,+#_7996141dc0e4652c3d74435722bb8331p@chr2:233321333..233321358, +
1.29e-69FFCP PHASE2:Hg19::chr2:233324211..233324229,-#_7996141dc0e4652c3d74435722bb8331-, p@chr2:233324211..233324229
1.4e-69FFCP PHASE2:Hg19::chr2:211427642..211427670,+#_b75d117675255e837429ff25563fd4c3p@chr2:211427642..211427670, +
1.4e-69FFCP PHASE1:Hg19::chr2:211427642..211427670,+#_b75d117675255e837429ff25563fd4c3p@chr2:211427642..211427670, +