Personal tools

UBERON:0001708

From FANTOM5_SSTAR

Jump to: navigation, search

Name:jaw skeleton
Namespace:FANTOM
Definition:"Bony structure of the mouth that holds the teeth. It consists of the MANDIBLE and the MAXILLA[MESH]." [Wikipedia:Jaw]
Xrefs:
links:

AAO:0000988
BTO:0001749
FMA:54396
GAID:214
galen:Jaw
MA:0001905
MESH:A.02.835.232.781.324.502
ncithesaurus:Jaw
OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA
TAO:0001227

ZFA:0001227
Synonyms: "anterior splanchnocranium" RELATED []
"jaw cartilage" EXACT [ZFA:0001227]
"jaws" RELATED []
"mandibular arch" RELATED [TAO:0001227]
"mandibular arch skeleton" EXACT [ZFA:0001227]
"oral jaw skeleton" RELATED []
"pharyngeal arch 1 skeleton" RELATED []
"visceral arch 1" RELATED []
Comments:TODO: move ZFA:0001227 (it is the entire jaw skeleton). Editor notes: in FMA, the jaw is an organism subdivision cluster, and includes mucosal tissue such as the gingiva as parts. It appears to be skeletal in MA (and has teeth as parts). It is reasonable to assume that ZFA and XAO consider the upper and lower jaws to be skeletal elements or clusters. EHDAA2 also considers these clusters. TODO - follow EHDAA2 model. These arbitrary differences in terminology and classification have to be reconciled with the genuine well-known biological differences in the skeletal elements across vertebrates. Development notes: There are cellular contributions from all three embryonic germ layers: pharyngeal mesoderm, endoderm and neural crest that migrates out of the ectoderm (Noden, 1983).
Alt_id: UBERON:FMA_54396-MA_0001905-ZFA_0001227
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010912(subdivision of skeleton)
part_of:UBERON:0011595(jaw region)



Children

part of:UBERON:0003277 (skeleton of upper jaw),UBERON:0012360 (bone of jaw)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001708 (jaw skeleton), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.94e-147FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_21e30417a2edaa8bccde25c6f3d08f70p@chr22:23586671..23586679, +
6.94e-147FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_21e30417a2edaa8bccde25c6f3d08f70p@chr22:23586671..23586679, +
1.55e-98FFCP PHASE1:Hg19::chr8:7752197..7752201,+#_abc89d1a7cd66e02746b950cf4a1fdf8p1@DEFB4A
1.55e-98FFCP PHASE2:Hg19::chr10:106205565..106205599,+#_abc89d1a7cd66e02746b950cf4a1fdf8p@chr10:106205565..106205599, +
1.55e-98FFCP PHASE2:Hg19::chr8:7752197..7752201,+#_abc89d1a7cd66e02746b950cf4a1fdf8p1@DEFB4A
1.55e-98FFCP PHASE1:Hg19::chr10:106205565..106205599,+#_abc89d1a7cd66e02746b950cf4a1fdf8p@chr10:106205565..106205599, +
1.55e-98FFCP PHASE2:Hg19::chr9:22256680..22256685,+#_abc89d1a7cd66e02746b950cf4a1fdf8p@chr9:22256680..22256685, +
1.55e-98FFCP PHASE1:Hg19::chr9:22256680..22256685,+#_abc89d1a7cd66e02746b950cf4a1fdf8p@chr9:22256680..22256685, +
4.23e-89FFCP PHASE2:Hg19::chr10:106205503..106205518,+#_fe22b9b53aa8cb76d7267e21dc0837b8p@chr10:106205503..106205518, +
4.23e-89FFCP PHASE1:Hg19::chr10:106205503..106205518,+#_fe22b9b53aa8cb76d7267e21dc0837b8p@chr10:106205503..106205518, +
5.72e-89FFCP PHASE1:Hg19::chr17:18343257..18343267,+#_9339d128b9a724e4a7550d6809362ea2p2@KRT16P1
5.72e-89FFCP PHASE2:Hg19::chr17:18343257..18343267,+#_9339d128b9a724e4a7550d6809362ea2p2@KRT16P1
7.73e-89FFCP PHASE2:Hg19::chr16:80068152..80068165,-#_20ba878e43c01f2afd1408309edaec43p@chr16:80068152..80068165, -
7.73e-89FFCP PHASE1:Hg19::chr16:80068152..80068165,-#_20ba878e43c01f2afd1408309edaec43p@chr16:80068152..80068165, -
2.01e-74FFCP PHASE2:Hg19::chr11:102140952..102140956,+#_1f5a2fdff2aa48037e338e2555625b42p@chr11:102140952..102140956, +
2.01e-74FFCP PHASE1:Hg19::chr11:102140952..102140956,+#_1f5a2fdff2aa48037e338e2555625b42p@chr11:102140952..102140956, +
1.16e-73FFCP PHASE2:Hg19::chr4:143470541..143470551,+#_188fad334f74ce8a964f542b28be38c9p@chr4:143470541..143470551, +
1.16e-73FFCP PHASE1:Hg19::chr4:143470541..143470551,+#_188fad334f74ce8a964f542b28be38c9p@chr4:143470541..143470551, +
3.35e-66FFCP PHASE2:Hg19::chr16:57954541..57954548,-#_3c2c0c5622b85ad7be192c364f53f652p@chr16:57954541..57954548, -
3.35e-66FFCP PHASE1:Hg19::chr16:57954541..57954548,-#_3c2c0c5622b85ad7be192c364f53f652p@chr16:57954541..57954548, -
2.61e-64FFCP PHASE2:Hg19::chr7:137570496..137570504,-#_efa9906a02df3b708283d080876056d7p@chr7:137570496..137570504, -
2.61e-64FFCP PHASE1:Hg19::chr7:137570496..137570504,-#_efa9906a02df3b708283d080876056d7p@chr7:137570496..137570504, -
3.24e-64FFCP PHASE2:Hg19::chr1:7447129..7447134,+#_030b888a4b149d2ef7f72b75a82d2b84p@chr1:7447129..7447134, +
3.24e-64FFCP PHASE1:Hg19::chr1:7447129..7447134,+#_030b888a4b149d2ef7f72b75a82d2b84p@chr1:7447129..7447134, +
6.18e-64FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_8d7255911942c021a2fe582e99c5a1c7p@chr21:44168074..44168079, +
6.18e-64FFCP PHASE2:Hg19::chr3:47155553..47155568,-#_8d7255911942c021a2fe582e99c5a1c7p@chr3:47155553..47155568, -
6.18e-64FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_8d7255911942c021a2fe582e99c5a1c7p@chr21:44168074..44168079, +
6.18e-64FFCP PHASE1:Hg19::chr3:47155553..47155568,-#_8d7255911942c021a2fe582e99c5a1c7p@chr3:47155553..47155568, -
2.15e-56FFCP PHASE1:Hg19::chr10:106205489..106205498,+#_010545db767089d1d7e8d5ce1f0c4051p@chr10:106205489..106205498, +
2.15e-56FFCP PHASE2:Hg19::chr10:106205489..106205498,+#_010545db767089d1d7e8d5ce1f0c4051p@chr10:106205489..106205498, +
5.53e-56FFCP PHASE2:Hg19::chr18:20493912..20493923,+#_28bff54a68c743518031dec1a27274eap@chr18:20493912..20493923, +
5.53e-56FFCP PHASE1:Hg19::chr18:20493912..20493923,+#_28bff54a68c743518031dec1a27274eap@chr18:20493912..20493923, +
6.68e-56FFCP PHASE2:Hg19::chr18:9649081..9649088,+#_816991b9a50a28e378309022680e6c27p@chr18:9649081..9649088, +
6.68e-56FFCP PHASE1:Hg19::chr18:9649081..9649088,+#_816991b9a50a28e378309022680e6c27p@chr18:9649081..9649088, +
2.23e-50FFCP PHASE2:Hg19::chr1:116072140..116072172,+#_dba7e6698cfd19dbaa692793951bfbaap@chr1:116072140..116072172, +
2.23e-50FFCP PHASE1:Hg19::chr1:116072140..116072172,+#_dba7e6698cfd19dbaa692793951bfbaap@chr1:116072140..116072172, +
3.1e-50FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_53d796798fdc6690892606e5e8dcb67bp14@C17orf67
3.1e-50FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_53d796798fdc6690892606e5e8dcb67bp14@C17orf67
3.1e-50FFCP PHASE2:Hg19::chr21:27558561..27558565,-#_53d796798fdc6690892606e5e8dcb67b-, p@chr21:27558561..27558565
3.1e-50FFCP PHASE2:Hg19::chr4:155387574..155387588,-#_53d796798fdc6690892606e5e8dcb67bp@chr4:155387574..155387588, -
3.1e-50FFCP PHASE1:Hg19::chr4:155387574..155387588,-#_53d796798fdc6690892606e5e8dcb67bp@chr4:155387574..155387588, -
3.1e-50FFCP PHASE1:Hg19::chr21:27558561..27558565,-#_53d796798fdc6690892606e5e8dcb67bp@chr21:27558561..27558565, -
3.11e-50FFCP PHASE2:Hg19::chr9:16094653..16094654,+#_42e945966700b9a8cca0af4332226ab9+, p@chr9:16094653..16094654
3.11e-50FFCP PHASE1:Hg19::chr9:16094653..16094654,+#_42e945966700b9a8cca0af4332226ab9p@chr9:16094653..16094654, +
4.37e-50FFCP PHASE1:Hg19::chr14:81221483..81221489,+#_353e08a4b5effd4630392c645da32d3cp@chr14:81221483..81221489, +
4.37e-50FFCP PHASE2:Hg19::chr14:81221483..81221489,+#_353e08a4b5effd4630392c645da32d3cp@chr14:81221483..81221489, +
5.14e-50FFCP PHASE2:Hg19::chr9:27524670..27524673,+#_ed17537433a3354237031064fbbc68dfp5@IFNK
5.14e-50FFCP PHASE1:Hg19::chr9:27524670..27524673,+#_ed17537433a3354237031064fbbc68dfp5@IFNK
6.11e-50FFCP PHASE1:Hg19::chr8:141728760..141728771,-#_c9157d3c90e67a125d3628aa4087b4aap36@PTK2
6.11e-50FFCP PHASE2:Hg19::chr8:141728760..141728771,-#_c9157d3c90e67a125d3628aa4087b4aap36@PTK2
3.1e-45FFCP PHASE2:Hg19::chr18:20493879..20493891,+#_ee3b856f7bb5709fad64077c43674fd3p@chr18:20493879..20493891, +
3.1e-45FFCP PHASE1:Hg19::chr18:20493879..20493891,+#_ee3b856f7bb5709fad64077c43674fd3p@chr18:20493879..20493891, +
3.1e-45FFCP PHASE2:Hg19::chr12:98739159..98739191,-#_ee3b856f7bb5709fad64077c43674fd3p@chr12:98739159..98739191, -
3.1e-45FFCP PHASE1:Hg19::chr12:98739159..98739191,-#_ee3b856f7bb5709fad64077c43674fd3p@chr12:98739159..98739191, -
4.19e-45FFCP PHASE2:Hg19::chr8:124850358..124850380,+#_10eedbb6d633b650f14c0b6d89c60fbap@chr8:124850358..124850380, +
4.19e-45FFCP PHASE1:Hg19::chr8:124850358..124850380,+#_10eedbb6d633b650f14c0b6d89c60fbap@chr8:124850358..124850380, +
9.63e-42FFCP PHASE1:Hg19::chr5:167247865..167247872,+#_7f8a215713073f6fc6b4d784fdbec028p23@ODZ2
9.63e-42FFCP PHASE2:Hg19::chr5:167247865..167247872,+#_7f8a215713073f6fc6b4d784fdbec028p23@ODZ2
1.27e-41FFCP PHASE2:Hg19::chr13:30259768..30259777,+#_015208cc2ad829e160a0c36ce3aa1fb3p@chr13:30259768..30259777, +
1.27e-41FFCP PHASE1:Hg19::chr13:30259768..30259777,+#_015208cc2ad829e160a0c36ce3aa1fb3p@chr13:30259768..30259777, +
2.2e-41FFCP PHASE2:Hg19::chr16:57954525..57954533,-#_8503121c3b0d74f2457fca64aa9bd75cp@chr16:57954525..57954533, -
2.2e-41FFCP PHASE1:Hg19::chr16:57954525..57954533,-#_8503121c3b0d74f2457fca64aa9bd75cp@chr16:57954525..57954533, -
8.67e-41FFCP PHASE1:Hg19::chr1:153113940..153113972,-#_2c9526eb635eb30f359f936dcf6019b9p1@SPRR2C, p2@SPRR2D, p3@SPRR2A
8.67e-41FFCP PHASE2:Hg19::chr1:153113940..153113972,-#_2c9526eb635eb30f359f936dcf6019b9p1@SPRR2C, p2@SPRR2D, p3@SPRR2A
1.31e-40FFCP PHASE1:Hg19::chr5:167247103..167247112,+#_1fd7afa50b609fa404c088ccefba28ffp@chr5:167247103..167247112, +
1.31e-40FFCP PHASE2:Hg19::chr5:167247103..167247112,+#_1fd7afa50b609fa404c088ccefba28ffp@chr5:167247103..167247112, +
1.48e-40FFCP PHASE2:Hg19::chr12:28299014..28299023,+#_f1a63d1abdfbd21f2f29f5fe41070fd3p20@CCDC91
1.48e-40FFCP PHASE1:Hg19::chr12:28299014..28299023,+#_f1a63d1abdfbd21f2f29f5fe41070fd3p20@CCDC91
4.94e-40FFCP PHASE2:Hg19::chr8:144414013..144414023,-#_fa3baafe0692aa994626acf447209903p8@TOP1MT
4.94e-40FFCP PHASE1:Hg19::chr8:144414013..144414023,-#_fa3baafe0692aa994626acf447209903p8@TOP1MT
4.61e-38FFCP PHASE2:Hg19::chr12:28116496..28116507,-#_071328318b14ae9b2177e2ceb9e00016p@chr12:28116496..28116507, -
4.61e-38FFCP PHASE1:Hg19::chr12:28116496..28116507,-#_071328318b14ae9b2177e2ceb9e00016-, p@chr12:28116496..28116507
2.1e-35FFCP PHASE2:Hg19::chr7:137570475..137570486,-#_b8fa369d8f3b161a14351b83cba4da07p@chr7:137570475..137570486, -
2.1e-35FFCP PHASE1:Hg19::chr7:137570475..137570486,-#_b8fa369d8f3b161a14351b83cba4da07p@chr7:137570475..137570486, -
3.35e-35FFCP PHASE2:Hg19::chr10:47746929..47746964,+#_de667b9b05ead1147c29fe14d8dfd99ep1@ANXA8L2
3.35e-35FFCP PHASE1:Hg19::chr10:47746929..47746964,+#_de667b9b05ead1147c29fe14d8dfd99ep1@ANXA8L2
5.06e-34FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_b06299db4a14a928b10a8d6209097eedp4@IFNK
5.06e-34FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_b06299db4a14a928b10a8d6209097eedp4@IFNK
9.88e-34FFCP PHASE1:Hg19::chr17:18343216..18343225,+#_217e3daf66cbbdd33abb1afbd6ff9e2bp1@KRT16P1
9.88e-34FFCP PHASE1:Hg19::chr4:71388662..71388695,+#_217e3daf66cbbdd33abb1afbd6ff9e2bp@chr4:71388662..71388695, +
9.88e-34FFCP PHASE2:Hg19::chr17:18343216..18343225,+#_217e3daf66cbbdd33abb1afbd6ff9e2bp1@KRT16P1
9.88e-34FFCP PHASE2:Hg19::chr4:71388662..71388695,+#_217e3daf66cbbdd33abb1afbd6ff9e2bp@chr4:71388662..71388695, +
4.98e-33FFCP PHASE2:Hg19::chr18:9617195..9617198,-#_78a4bbcd505aa44cca419eb686f23ad0p@chr18:9617195..9617198, -
4.98e-33FFCP PHASE1:Hg19::chr18:9617195..9617198,-#_78a4bbcd505aa44cca419eb686f23ad0p@chr18:9617195..9617198, -
7.69e-33FFCP PHASE2:Hg19::chr11:13073062..13073067,+#_9f80f55bd3620454f1e433a547b4425ap@chr11:13073062..13073067, +
7.69e-33FFCP PHASE1:Hg19::chr11:13073062..13073067,+#_9f80f55bd3620454f1e433a547b4425ap@chr11:13073062..13073067, +
9.55e-33FFCP PHASE2:Hg19::chr12:47182487..47182490,-#_733ff0dbd4bf52561f89b1235a235597p@chr12:47182487..47182490, -
9.55e-33FFCP PHASE2:Hg19::chr11:93754316..93754353,+#_733ff0dbd4bf52561f89b1235a235597p2@HEPHL1
9.55e-33FFCP PHASE1:Hg19::chr12:47182487..47182490,-#_733ff0dbd4bf52561f89b1235a235597p@chr12:47182487..47182490, -
9.55e-33FFCP PHASE1:Hg19::chr11:93754316..93754353,+#_733ff0dbd4bf52561f89b1235a235597p2@HEPHL1
1.18e-32FFCP PHASE2:Hg19::chr1:242927602..242927613,-#_174af6ed5c30e7ba2023ae713569fc30p@chr1:242927602..242927613, -
1.18e-32FFCP PHASE2:Hg19::chr6:29643393..29643442,-#_174af6ed5c30e7ba2023ae713569fc30p@chr6:29643393..29643442, -
1.18e-32FFCP PHASE1:Hg19::chr6:29643393..29643442,-#_174af6ed5c30e7ba2023ae713569fc30p@chr6:29643393..29643442, -
1.18e-32FFCP PHASE1:Hg19::chr1:242927602..242927613,-#_174af6ed5c30e7ba2023ae713569fc30p@chr1:242927602..242927613, -
1.47e-32FFCP PHASE1:Hg19::chr15:42566543..42566553,+#_3ad640bee55503b22aa1c1c468661315p11@GANC
1.47e-32FFCP PHASE2:Hg19::chr15:42566543..42566553,+#_3ad640bee55503b22aa1c1c468661315p11@GANC
2.03e-32FFCP PHASE2:Hg19::chr8:105212349..105212367,+#_8028ff4c3af7797e2b3b1ad39697430bp@chr8:105212349..105212367, +
2.03e-32FFCP PHASE1:Hg19::chr8:105212349..105212367,+#_8028ff4c3af7797e2b3b1ad39697430bp@chr8:105212349..105212367, +
2.12e-30FFCP PHASE2:Hg19::chr3:149510368..149510386,-#_85e6fd3c3b804c4902c7750954d5dedbp5@ANKUB1
2.12e-30FFCP PHASE1:Hg19::chr3:149510368..149510386,-#_85e6fd3c3b804c4902c7750954d5dedbp5@ANKUB1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal and cartilaginous elements of the first pharyngeal arch.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.