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UBERON:0001709

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Name:upper jaw region
Namespace:FANTOM
Definition:"The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator]
Xrefs:
links:

AAO:0000620
EHDAA2:0002118
EHDAA:8025
EMAPA:17924
FMA:54397
[ 200px-Gray189.png 200px-Gray189.png]
MA:0001908
ncithesaurus:Upper_Jaw
VHOG:0000454

XAO:0003087
Synonyms: "dorsal mandibular arch" RELATED []
"dorsal pharyngeal arch 1" RELATED INCONSISTENT []
"dorsal visceral arch 1" EXACT [ZFA:0001272]
"palatoquadrate arch" EXACT []
"upper pharyngeal jaw" EXACT [ZFA:0001272]
"upper pharyngeal jaws" RELATED []
Comments:AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head
Alt_id: UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0011595(jaw region)
part_of:UBERON:0004089(midface)



Children

part of:UBERON:0003277 (skeleton of upper jaw),UBERON:0003323 (mesenchyme of upper jaw),UBERON:0011597 (bone of upper jaw)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001709 (upper jaw region), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_56d24e048da30aad5aad3a2c6274b733p14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_56d24e048da30aad5aad3a2c6274b733p14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_b6d4c00d19a7545146a24575d207e591p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_b6d4c00d19a7545146a24575d207e591p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_b6d4c00d19a7545146a24575d207e591p12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_b6d4c00d19a7545146a24575d207e591p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_b6d4c00d19a7545146a24575d207e591p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_b6d4c00d19a7545146a24575d207e591p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_b6d4c00d19a7545146a24575d207e591p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_b6d4c00d19a7545146a24575d207e591p13@C17orf67
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_79d9f1ae677b83dffcd45b7462faf504p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_79d9f1ae677b83dffcd45b7462faf504p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_79d9f1ae677b83dffcd45b7462faf504p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_79d9f1ae677b83dffcd45b7462faf504p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_c5b5d309b73692a89e78db814f006248p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_c5b5d309b73692a89e78db814f006248p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_8965bd240707b6b4144c952bf1d39915p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_8965bd240707b6b4144c952bf1d39915p9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_8965bd240707b6b4144c952bf1d39915p17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_8965bd240707b6b4144c952bf1d39915+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_8965bd240707b6b4144c952bf1d39915p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_8965bd240707b6b4144c952bf1d39915p17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_f5c5a2f466aaf191b14eabe74b7df46ep@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_f5c5a2f466aaf191b14eabe74b7df46ep@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_43bbf23473c2c44452ed46aa5d06f924p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_43bbf23473c2c44452ed46aa5d06f924p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_43bbf23473c2c44452ed46aa5d06f924p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_43bbf23473c2c44452ed46aa5d06f924p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_43bbf23473c2c44452ed46aa5d06f924p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_43bbf23473c2c44452ed46aa5d06f924p7@ALX1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_757e5c48832031fd1af1de02517f68a4p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_757e5c48832031fd1af1de02517f68a4p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_757e5c48832031fd1af1de02517f68a4p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_757e5c48832031fd1af1de02517f68a4p23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_29dce4313e9b3e5ace02ee225edbaf97-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_29dce4313e9b3e5ace02ee225edbaf97p@chr8:57353666..57353675, -
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_88f05b2e8abd57706953892bac954364p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_88f05b2e8abd57706953892bac954364p2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_88f05b2e8abd57706953892bac954364p12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_88f05b2e8abd57706953892bac954364p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_88f05b2e8abd57706953892bac954364p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_88f05b2e8abd57706953892bac954364p12@FAM65C
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_f236ba74308db75366741e6b334dbb62p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_f236ba74308db75366741e6b334dbb62p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_f236ba74308db75366741e6b334dbb62p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_f236ba74308db75366741e6b334dbb62p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_c6132c0c10333183c54fac754c8e6e97p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_c6132c0c10333183c54fac754c8e6e97p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_c6132c0c10333183c54fac754c8e6e97p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_c6132c0c10333183c54fac754c8e6e97p@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_059bc0912565ba3c9a09493e9d95fbacp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_059bc0912565ba3c9a09493e9d95fbacp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_059bc0912565ba3c9a09493e9d95fbacp4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_059bc0912565ba3c9a09493e9d95fbacp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_059bc0912565ba3c9a09493e9d95fbacp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_059bc0912565ba3c9a09493e9d95fbacp@chr10:15760985..15760992, -
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_506d9f536c91de562253f85e49b97380p9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_506d9f536c91de562253f85e49b97380p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_004a1d9e554377c249015417525ce3ddp@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_004a1d9e554377c249015417525ce3ddp@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_3feeb0455aa6dc1467e24cec7ecd7464p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_3feeb0455aa6dc1467e24cec7ecd7464-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_3feeb0455aa6dc1467e24cec7ecd7464p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_3feeb0455aa6dc1467e24cec7ecd7464p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_0c090d183d4004944a22ee727e9fba1fp12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_0c090d183d4004944a22ee727e9fba1fp4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_0c090d183d4004944a22ee727e9fba1f-, p@chr5:19721484..19721507
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_0c090d183d4004944a22ee727e9fba1fp4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_0c090d183d4004944a22ee727e9fba1fp12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_0c090d183d4004944a22ee727e9fba1fp@chr5:19721484..19721507, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_7ddd3cb828b2d88065a65916a14d3c40+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_7ddd3cb828b2d88065a65916a14d3c40-, p@chr8:57353982..57353991
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_7ddd3cb828b2d88065a65916a14d3c40p@chr8:57353804..57353821, -
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_22cd17ee56b6a5eee0a4afb833e950ebp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_22cd17ee56b6a5eee0a4afb833e950ebp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_22cd17ee56b6a5eee0a4afb833e950ebp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_22cd17ee56b6a5eee0a4afb833e950ebp10@ITGA8
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_9a9f83bf39bc8c777adf9e9d67128af3p@chrX:132670143..132670152, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_dc1dbcb181d0fc5899c8f296086b6caap@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_dc1dbcb181d0fc5899c8f296086b6caap@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_bb5879f75c96d4291f8481edd7cab3d8p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_bb5879f75c96d4291f8481edd7cab3d8p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_bb5879f75c96d4291f8481edd7cab3d8p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_bb5879f75c96d4291f8481edd7cab3d8p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_bb5879f75c96d4291f8481edd7cab3d8-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_bb5879f75c96d4291f8481edd7cab3d8p18@MEF2D
4.2e-29FFCP PHASE1:Hg19::chr1:6615468..6615485,+#_780b8d7be3e84308a2cbbe4a169e1387p1@TAS1R1
4.2e-29FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_780b8d7be3e84308a2cbbe4a169e1387+, p@chr1:75602768..75602785










Property "Property value" (as page type) with input value "UBPROP:0000001 "Superior maxillary arch located on the anterior and lateral sides of the skull.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.