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UBERON:0001744

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Name:lymphoid tissue
Namespace:FANTOM
Definition:"Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue]
Xrefs:
links:

BTO:0000753
FMA:55220
GAID:342
galen:LymphoidTissue
MA:0002436
MESH:A.10.549
ncithesaurus:Lymphoid_Tissue

SCTID:181768009
Synonyms: "lymphatic tissue" EXACT []
"lymphocytic tissue" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_55220-MA_0002436
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data

Parents

is_a:UBERON:0000479(tissue)
part_of:UBERON:0002193(hemolymphoid system),UBERON:0002465(lymphoid system)



Children

is a:UBERON:0012069 (epithelium-associated lymphoid tissue)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001744 (lymphoid tissue), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_7ff2e1def5c9cd32f90af42bed913aaap7@CU692075
5.42e-195FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_7ff2e1def5c9cd32f90af42bed913aaap@chr19:5850872..5850893, -
5.42e-195FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_7ff2e1def5c9cd32f90af42bed913aaap1@IGKV6-21
5.42e-195FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_7ff2e1def5c9cd32f90af42bed913aaap2@IGHV3-53
5.42e-195FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_7ff2e1def5c9cd32f90af42bed913aaap2@ENST00000424377
5.42e-195FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_7ff2e1def5c9cd32f90af42bed913aaap7@CU692075
5.42e-195FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_7ff2e1def5c9cd32f90af42bed913aaap@chr16:12334592..12334599, +
5.42e-195FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_7ff2e1def5c9cd32f90af42bed913aaap@chr16:12334592..12334599, +
5.42e-195FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_7ff2e1def5c9cd32f90af42bed913aaap@chr19:5850872..5850893, -
5.42e-195FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_7ff2e1def5c9cd32f90af42bed913aaap2@IGHV3-53
5.42e-195FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_7ff2e1def5c9cd32f90af42bed913aaap@chr16:12337006..12337010, +
5.42e-195FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_7ff2e1def5c9cd32f90af42bed913aaap1@IGKV6-21
5.42e-195FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_7ff2e1def5c9cd32f90af42bed913aaap2@ENST00000424377
5.42e-195FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_7ff2e1def5c9cd32f90af42bed913aaap@chr16:12337006..12337010, +
9.37e-99FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr19:14662395..14662414, +
9.37e-99FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr11:1263622..1263627, +
9.37e-99FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr11:1263622..1263627, +
9.37e-99FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_8c96b0f733ff2d89c8c4372b9a7fc264p10@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_8c96b0f733ff2d89c8c4372b9a7fc264p8@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr6:168095835..168095838, -
9.37e-99FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr7:25361115..25361117, +
9.37e-99FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_8c96b0f733ff2d89c8c4372b9a7fc264p30@MUC5B
9.37e-99FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_8c96b0f733ff2d89c8c4372b9a7fc264p30@MUC5B
9.37e-99FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_8c96b0f733ff2d89c8c4372b9a7fc264p10@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr19:14662395..14662414, +
9.37e-99FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr7:25361115..25361117, +
9.37e-99FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_8c96b0f733ff2d89c8c4372b9a7fc264p@chr6:168095835..168095838, -
9.37e-99FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_8c96b0f733ff2d89c8c4372b9a7fc264p8@BPIFB6
2.55e-98FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp6@METTL19
2.55e-98FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr10:135337234..135337244, -
2.55e-98FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr11:1260725..1260734, +
2.55e-98FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr11:1260725..1260734, +
2.55e-98FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp6@METTL19
2.55e-98FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp30@RPRD1B
2.55e-98FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr16:70602961..70602972, +
2.55e-98FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp30@RPRD1B
2.55e-98FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr12:52478564..52478569, +
2.55e-98FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr10:135337234..135337244, -
2.55e-98FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr16:70602961..70602972, +
2.55e-98FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_eadc745b3f3d225e40b2cbdfb1f6c69f+, p@chr12:52478564..52478569
2.55e-98FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_eadc745b3f3d225e40b2cbdfb1f6c69fp@chr11:1263382..1263385, +
1.87e-86FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr19:31038353..31038362, +
1.87e-86FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr2:63059909..63059910, +
1.87e-86FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:115979100..115979103, -
1.87e-86FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr2:14201203..14201212, +
1.87e-86FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr19:38060099..38060102, +
1.87e-86FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:116051009..116051016, -
1.87e-86FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr2:14201203..14201212, +
1.87e-86FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr8:23117055..23117056, -
1.87e-86FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p1@ENSMUST00000114212
1.87e-86FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr6:69785263..69785268, -
1.87e-86FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p1@ENSMUST00000114212
1.87e-86FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr2:63059909..63059910, +
1.87e-86FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr19:31038353..31038362, +
1.87e-86FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr17:59564142..59564144, +
1.87e-86FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr6:69785263..69785268, -
1.87e-86FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525+, p@chr9:69086930..69086933
1.87e-86FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr19:38060099..38060102, +
1.87e-86FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr17:59564142..59564144, +
1.87e-86FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525-, p@chr12:115974938..115974945
1.87e-86FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr8:23117055..23117056, -
1.87e-86FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr9:69086930..69086933, +
1.87e-86FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:116051009..116051016, -
1.87e-86FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:115979100..115979103, -
1.87e-86FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_4c86dcd3b8c4f5cf84bd729fb7cdf525p@chr12:115974938..115974945, -
1.23e-66FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_f7873f47078b10f870e23fba81db8d23p@chr12:52478546..52478552, +
1.23e-66FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_f7873f47078b10f870e23fba81db8d23p@chr12:52478546..52478552, +
1.23e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_f7873f47078b10f870e23fba81db8d23p2@FCRL4
1.23e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_f7873f47078b10f870e23fba81db8d23p2@FCRL4
2.39e-66FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_eff6b61b7f0c01f547111d5323c61c64p1@BC131817
2.39e-66FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_eff6b61b7f0c01f547111d5323c61c64p@chr14:103560509..103560517, +
2.39e-66FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_eff6b61b7f0c01f547111d5323c61c64p1@BC131817
2.39e-66FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_eff6b61b7f0c01f547111d5323c61c64p@chr13:107026326..107026335, -
2.39e-66FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_eff6b61b7f0c01f547111d5323c61c64p@chr20:31612754..31612763, +
2.39e-66FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_eff6b61b7f0c01f547111d5323c61c64p@chr19:36640447..36640459, +
2.39e-66FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_eff6b61b7f0c01f547111d5323c61c64p@chr19:36640447..36640459, +
2.39e-66FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_eff6b61b7f0c01f547111d5323c61c64p@chr11:1265985..1265990, +
2.39e-66FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_eff6b61b7f0c01f547111d5323c61c64p@chr11:1265985..1265990, +
2.39e-66FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_eff6b61b7f0c01f547111d5323c61c64p@chr13:107026326..107026335, -
2.39e-66FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_eff6b61b7f0c01f547111d5323c61c64+, p@chr14:103560509..103560517
2.39e-66FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_eff6b61b7f0c01f547111d5323c61c64p@chr20:31612754..31612763, +
4.66e-66FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr18:29006845..29006854, -
4.66e-66FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_bfe3c20827da2e88dcffdec71251ae6cp10@KLK11
4.66e-66FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr3:124535316..124535340, +
4.66e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_bfe3c20827da2e88dcffdec71251ae6cp43@LPP
4.66e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr16:69418649..69418659, -
4.66e-66FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_bfe3c20827da2e88dcffdec71251ae6cp9@ESPL1
4.66e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_bfe3c20827da2e88dcffdec71251ae6cp@chr16:69418649..69418659, -
4.66e-66FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_bfe3c20827da2e88dcffdec71251ae6cp10@KLK11
4.66e-66FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr18:49921251..49921263, +
4.66e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_bfe3c20827da2e88dcffdec71251ae6cp58@LPP
4.66e-66FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr1:152382640..152382645, +
4.66e-66FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_bfe3c20827da2e88dcffdec71251ae6cp43@LPP
4.66e-66FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr3:124535316..124535340, +
4.66e-66FFCP PHASE2:Hg19::chr11:1283367..1283377,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr11:1283367..1283377, +
4.66e-66FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_bfe3c20827da2e88dcffdec71251ae6cp@chr11:1283367..1283377, +
4.66e-66FFCP PHASE1:Hg19::chr12:53673418..53673427,+#_bfe3c20827da2e88dcffdec71251ae6cp9@ESPL1

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