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UBERON:0001846

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Name:internal ear
Namespace:FANTOM
Definition:"Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
Xrefs:
links:

AAO:0000238
BTO:0000630
EFO:0001363
EHDAA2:0000831
EHDAA:504
EMAPA:16194
EV:0100361
FMA:60909
GAID:871
galen:InnerEar
[ 200px-Gray923.png 200px-Gray923.png]
MA:0000237
MAT:0000145
MESH:A.09.246.631
MIAA:0000145
ncithesaurus:Internal_Ear
NIF_GrossAnatomy:birnlex_1196
OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
SCTID:181189006
TAO:0000217
VHOG:0000284
XAO:0000192

ZFA:0000217
Synonyms: "auris interna" RELATED [BTO:0000630]
"inner ear" EXACT []
"labyrinth" RELATED []
"otocyst" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0003051(ear vesicle)
part_of:UBERON:0001690(ear)



Children

derives from:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample)
part of:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample),UBERON:0001839 (bony labyrinth),UBERON:0001849 (membranous labyrinth),UBERON:0004637 (otic capsule),UBERON:0010113 (future membranous labyrinth),UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010351 (otic capsule cartilage condensation)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001846 (internal ear), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_290235bc8c76f63330a2b730572b2dadp1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_290235bc8c76f63330a2b730572b2dadp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_290235bc8c76f63330a2b730572b2dadp3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_290235bc8c76f63330a2b730572b2dadp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_290235bc8c76f63330a2b730572b2dadp6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_290235bc8c76f63330a2b730572b2dadp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_290235bc8c76f63330a2b730572b2dadp2@Gpr152
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_290235bc8c76f63330a2b730572b2dadp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_290235bc8c76f63330a2b730572b2dadp1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_290235bc8c76f63330a2b730572b2dadp@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_290235bc8c76f63330a2b730572b2dadp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_290235bc8c76f63330a2b730572b2dadp@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_290235bc8c76f63330a2b730572b2dadp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_290235bc8c76f63330a2b730572b2dadp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_290235bc8c76f63330a2b730572b2dadp@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_290235bc8c76f63330a2b730572b2dadp21@Espn
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_290235bc8c76f63330a2b730572b2dadp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_290235bc8c76f63330a2b730572b2dadp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_290235bc8c76f63330a2b730572b2dadp10@Otof
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_290235bc8c76f63330a2b730572b2dadp6@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_290235bc8c76f63330a2b730572b2dadp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_290235bc8c76f63330a2b730572b2dadp15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_290235bc8c76f63330a2b730572b2dadp@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_290235bc8c76f63330a2b730572b2dadp4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_290235bc8c76f63330a2b730572b2dadp@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_290235bc8c76f63330a2b730572b2dadp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_290235bc8c76f63330a2b730572b2dadp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_290235bc8c76f63330a2b730572b2dadp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_290235bc8c76f63330a2b730572b2dadp1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_290235bc8c76f63330a2b730572b2dadp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_290235bc8c76f63330a2b730572b2dadp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_290235bc8c76f63330a2b730572b2dadp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_290235bc8c76f63330a2b730572b2dadp1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_290235bc8c76f63330a2b730572b2dadp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_290235bc8c76f63330a2b730572b2dadp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_290235bc8c76f63330a2b730572b2dadp@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_290235bc8c76f63330a2b730572b2dadp2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_290235bc8c76f63330a2b730572b2dadp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_290235bc8c76f63330a2b730572b2dadp5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_290235bc8c76f63330a2b730572b2dadp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_290235bc8c76f63330a2b730572b2dadp11@Tecta
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_290235bc8c76f63330a2b730572b2dadp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_290235bc8c76f63330a2b730572b2dadp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_290235bc8c76f63330a2b730572b2dadp3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_290235bc8c76f63330a2b730572b2dadp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13508015..13508019, +
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_290235bc8c76f63330a2b730572b2dadp@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_290235bc8c76f63330a2b730572b2dadp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_290235bc8c76f63330a2b730572b2dadp12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_290235bc8c76f63330a2b730572b2dadp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_290235bc8c76f63330a2b730572b2dadp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_290235bc8c76f63330a2b730572b2dadp13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_290235bc8c76f63330a2b730572b2dadp2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_290235bc8c76f63330a2b730572b2dadp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_290235bc8c76f63330a2b730572b2dadp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_290235bc8c76f63330a2b730572b2dadp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_290235bc8c76f63330a2b730572b2dadp4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_290235bc8c76f63330a2b730572b2dadp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_290235bc8c76f63330a2b730572b2dadp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_290235bc8c76f63330a2b730572b2dadp@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_290235bc8c76f63330a2b730572b2dadp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_290235bc8c76f63330a2b730572b2dadp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_290235bc8c76f63330a2b730572b2dadp21@Espn
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_290235bc8c76f63330a2b730572b2dadp@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_290235bc8c76f63330a2b730572b2dadp4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_290235bc8c76f63330a2b730572b2dadp@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_290235bc8c76f63330a2b730572b2dadp4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_290235bc8c76f63330a2b730572b2dadp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_290235bc8c76f63330a2b730572b2dadp4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_290235bc8c76f63330a2b730572b2dadp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_290235bc8c76f63330a2b730572b2dadp2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_290235bc8c76f63330a2b730572b2dadp1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_290235bc8c76f63330a2b730572b2dadp7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_290235bc8c76f63330a2b730572b2dadp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_290235bc8c76f63330a2b730572b2dadp7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_290235bc8c76f63330a2b730572b2dadp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_290235bc8c76f63330a2b730572b2dadp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_290235bc8c76f63330a2b730572b2dadp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_290235bc8c76f63330a2b730572b2dadp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_290235bc8c76f63330a2b730572b2dadp1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_290235bc8c76f63330a2b730572b2dadp4@Gipc3










Property "Property value" (as page type) with input value "UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.