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UBERON:0001849

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Name:membranous labyrinth
Namespace:FANTOM
Definition:"Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
Xrefs:
links:

AAO:0011060
EHDAA:4698
EMAPA:17815
EV:0100367
FMA:61022
[ Gray924.png Gray924.png]
[ 200px-Gray924.png 200px-Gray924.png]
MA:0000242
ncithesaurus:Membranous_Labyrinth
SCTID:263790009
VHOG:0000729

XAO:0000194
Synonyms: "labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
Comments:inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
Alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
Subset: organ_slim
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000062(organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0005641(otocyst epithelium)
part_of:UBERON:0001846(internal ear)



Children

part of:UBERON:0002499 (cochlear labyrinth)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001849 (membranous labyrinth), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_ff6b9d38f6a159b0c39897a75ae91190p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_ff6b9d38f6a159b0c39897a75ae91190p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_ff6b9d38f6a159b0c39897a75ae91190p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_ff6b9d38f6a159b0c39897a75ae91190p6@Tecta
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_ff6b9d38f6a159b0c39897a75ae91190p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_ff6b9d38f6a159b0c39897a75ae91190p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_ff6b9d38f6a159b0c39897a75ae91190p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_ff6b9d38f6a159b0c39897a75ae91190p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_ff6b9d38f6a159b0c39897a75ae91190p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_ff6b9d38f6a159b0c39897a75ae91190p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_ff6b9d38f6a159b0c39897a75ae91190p13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_ff6b9d38f6a159b0c39897a75ae91190p12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_ff6b9d38f6a159b0c39897a75ae91190p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_ff6b9d38f6a159b0c39897a75ae91190p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_ff6b9d38f6a159b0c39897a75ae91190p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_ff6b9d38f6a159b0c39897a75ae91190p7@A730017C20Rik
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_ff6b9d38f6a159b0c39897a75ae91190p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:31283072..31283081, -