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UBERON:0001873

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Name:caudate nucleus
Namespace:FANTOM
Definition:"Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus]
Xrefs:
links:

BM:Tel-CA
BTO:0000211
EFO:0000907
EMAPA:18207
EV:0100185
FMA:61833
GAID:670
[1]
[2]
MA:0000894
MAT:0000513
MESH:A.08.186.211.730.885.105.487.550.184
ncithesaurus:Caudate_Nucleus
NIF_GrossAnatomy:birnlex_1373
OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA

SCTID:279297002
Synonyms: "caudatus" EXACT []
"nucleus caudatus" RELATED [BTO:0000211]
"nucleus caudatus" RELATED LATIN [Wikipedia:Caudate_nucleus]
Comments:CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
Alt_id: UBERON:FMA_61833-MA_0000894
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0009663(telencephalic nucleus)
develops_from:UBERON:0010122(future caudate nucleus)
part_of:UBERON:0000369(corpus striatum),UBERON:0002435(striatum),UBERON:0005382(dorsal striatum),UBERON:0005383(caudate-putamen)



Children

is a:FF:10354-105E3 (caudate nucleus, newborn, donor10223)
derives from:FF:0010164 (human caudate nucleus - adult donor sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001873 (caudate nucleus), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.61e-131FFCP PHASE1:Hg19::chr7:67237110..67237117,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr7:67237110..67237117, +
4.61e-131FFCP PHASE2:Hg19::chr17:77721568..77721571,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr17:77721568..77721571, +
4.61e-131FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr18:54898506..54898515, +
4.61e-131FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr18:54898506..54898515, +
4.61e-131FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_e61d0aff9b289bd01b2859c4dfdddb83p5@ENST00000514240
4.61e-131FFCP PHASE1:Hg19::chr17:77721568..77721571,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr17:77721568..77721571, +
4.61e-131FFCP PHASE2:Hg19::chr7:67237110..67237117,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr7:67237110..67237117, +
4.61e-131FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr17:7271778..7271784, +
4.61e-131FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_e61d0aff9b289bd01b2859c4dfdddb83p5@ENST00000514240
4.61e-131FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_e61d0aff9b289bd01b2859c4dfdddb83p@chr17:7271778..7271784, +
8.99e-131FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_4f3a80df92eb5ddf2b6b849d3b364484p@chr18:47967443..47967452, -
8.99e-131FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_4f3a80df92eb5ddf2b6b849d3b364484p@chr18:47967443..47967452, -
1.75e-130FFCP PHASE1:Hg19::chr1:182640923..182640935,-#_80737030f333a4de05f0a3246b73b3f2p6@RGS8
1.75e-130FFCP PHASE2:Hg19::chr1:182640923..182640935,-#_80737030f333a4de05f0a3246b73b3f2p6@RGS8
5.68e-99FFCP PHASE1:Hg19::chr16:645297..645302,+#_a823f485b745cc83d51d2ed12bc8f922p@chr16:645297..645302, +
5.68e-99FFCP PHASE2:Hg19::chr16:645297..645302,+#_a823f485b745cc83d51d2ed12bc8f922p@chr16:645297..645302, +
5.68e-99FFCP PHASE1:Hg19::chr22:28195426..28195433,-#_a823f485b745cc83d51d2ed12bc8f922p@chr22:28195426..28195433, -
5.68e-99FFCP PHASE1:Hg19::chrX:45984754..45984763,+#_a823f485b745cc83d51d2ed12bc8f922p@chrX:45984754..45984763, +
5.68e-99FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_a823f485b745cc83d51d2ed12bc8f922p@chr13:112726433..112726446, +
5.68e-99FFCP PHASE2:Hg19::chr22:28195426..28195433,-#_a823f485b745cc83d51d2ed12bc8f922p@chr22:28195426..28195433, -
5.68e-99FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_a823f485b745cc83d51d2ed12bc8f922p@chr13:112726433..112726446, +
5.68e-99FFCP PHASE2:Hg19::chrX:45984754..45984763,+#_a823f485b745cc83d51d2ed12bc8f922+, p@chrX:45984754..45984763
9.38e-99FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_cc2e41e77c3552c206815225498ffd48p@chr12:6031299..6031315, -
9.38e-99FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_cc2e41e77c3552c206815225498ffd48p@chr2:152828264..152828299, -
9.38e-99FFCP PHASE1:Hg19::chr7:131761558..131761590,-#_cc2e41e77c3552c206815225498ffd48p@chr7:131761558..131761590, -
9.38e-99FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_cc2e41e77c3552c206815225498ffd48p@chr2:152828264..152828299, -
9.38e-99FFCP PHASE2:Hg19::chr7:131761558..131761590,-#_cc2e41e77c3552c206815225498ffd48-, p@chr7:131761558..131761590
9.38e-99FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_cc2e41e77c3552c206815225498ffd48p@chr18:47967428..47967437, -
9.38e-99FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_cc2e41e77c3552c206815225498ffd48p@chr12:6031299..6031315, -
9.38e-99FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_cc2e41e77c3552c206815225498ffd48p@chr18:47967428..47967437, -
1.55e-98FFCP PHASE2:Hg19::chr3:35730760..35730766,+#_02faf90d3e6fb2fa125a4223be876b44p78@ARPP21
1.55e-98FFCP PHASE1:Hg19::chr2:10978182..10978189,-#_02faf90d3e6fb2fa125a4223be876b44p17@PDIA6
1.55e-98FFCP PHASE2:Hg19::chr3:154148047..154148051,-#_02faf90d3e6fb2fa125a4223be876b44p@chr3:154148047..154148051, -
1.55e-98FFCP PHASE1:Hg19::chr14:74892961..74892962,-#_02faf90d3e6fb2fa125a4223be876b44p9@SYNDIG1L
1.55e-98FFCP PHASE1:Hg19::chr18:24521807..24521809,+#_02faf90d3e6fb2fa125a4223be876b44p@chr18:24521807..24521809, +
1.55e-98FFCP PHASE2:Hg19::chr1:234040273..234040278,+#_02faf90d3e6fb2fa125a4223be876b44p14@SLC35F3
1.55e-98FFCP PHASE2:Hg19::chr10:560764..560769,-#_02faf90d3e6fb2fa125a4223be876b44p@chr10:560764..560769, -
1.55e-98FFCP PHASE1:Hg19::chr2:86769939..86769942,-#_02faf90d3e6fb2fa125a4223be876b44p17@RNF103-CHMP3, p19@CHMP3
1.55e-98FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_02faf90d3e6fb2fa125a4223be876b44p@chr1:31352916..31352926, -
1.55e-98FFCP PHASE1:Hg19::chr1:234149057..234149066,+#_02faf90d3e6fb2fa125a4223be876b44p@chr1:234149057..234149066, +
1.55e-98FFCP PHASE1:Hg19::chr7:24530137..24530142,+#_02faf90d3e6fb2fa125a4223be876b44p@chr7:24530137..24530142, +
1.55e-98FFCP PHASE2:Hg19::chr6:36743426..36743433,-#_02faf90d3e6fb2fa125a4223be876b44p@chr6:36743426..36743433, -
1.55e-98FFCP PHASE1:Hg19::chr3:35730760..35730766,+#_02faf90d3e6fb2fa125a4223be876b44p78@ARPP21
1.55e-98FFCP PHASE2:Hg19::chr10:560806..560813,-#_02faf90d3e6fb2fa125a4223be876b44p@chr10:560806..560813, -
1.55e-98FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_02faf90d3e6fb2fa125a4223be876b44p@chr1:31352916..31352926, -
1.55e-98FFCP PHASE1:Hg19::chr3:154148047..154148051,-#_02faf90d3e6fb2fa125a4223be876b44p@chr3:154148047..154148051, -
1.55e-98FFCP PHASE2:Hg19::chr2:10978182..10978189,-#_02faf90d3e6fb2fa125a4223be876b44p17@PDIA6
1.55e-98FFCP PHASE2:Hg19::chr1:31352969..31352970,-#_02faf90d3e6fb2fa125a4223be876b44p@chr1:31352969..31352970, -
1.55e-98FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_02faf90d3e6fb2fa125a4223be876b44p@chr8:19799565..19799589, -
1.55e-98FFCP PHASE2:Hg19::chr1:234149057..234149066,+#_02faf90d3e6fb2fa125a4223be876b44p@chr1:234149057..234149066, +
1.55e-98FFCP PHASE2:Hg19::chr14:74892961..74892962,-#_02faf90d3e6fb2fa125a4223be876b44p9@SYNDIG1L
1.55e-98FFCP PHASE1:Hg19::chr10:560764..560769,-#_02faf90d3e6fb2fa125a4223be876b44p@chr10:560764..560769, -
1.55e-98FFCP PHASE1:Hg19::chr1:31352969..31352970,-#_02faf90d3e6fb2fa125a4223be876b44p@chr1:31352969..31352970, -
1.55e-98FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_02faf90d3e6fb2fa125a4223be876b44-, p@chr8:19799565..19799589
1.55e-98FFCP PHASE1:Hg19::chr6:36743426..36743433,-#_02faf90d3e6fb2fa125a4223be876b44p@chr6:36743426..36743433, -
1.55e-98FFCP PHASE2:Hg19::chr2:86769939..86769942,-#_02faf90d3e6fb2fa125a4223be876b44p17@RNF103-CHMP3, p19@CHMP3
1.55e-98FFCP PHASE2:Hg19::chr18:24521807..24521809,+#_02faf90d3e6fb2fa125a4223be876b44p@chr18:24521807..24521809, +
1.55e-98FFCP PHASE2:Hg19::chr7:24530137..24530142,+#_02faf90d3e6fb2fa125a4223be876b44+, p@chr7:24530137..24530142
1.55e-98FFCP PHASE1:Hg19::chr1:234040273..234040278,+#_02faf90d3e6fb2fa125a4223be876b44p14@SLC35F3
1.55e-98FFCP PHASE1:Hg19::chr10:560806..560813,-#_02faf90d3e6fb2fa125a4223be876b44p@chr10:560806..560813, -
2.56e-98FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_7cdd5a205690c9b4af2916a99e96acf3p@chr14:78638610..78638621, +
2.56e-98FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_7cdd5a205690c9b4af2916a99e96acf3p@chr14:78638610..78638621, +
1.05e-79FFCP PHASE2:Hg19::chr6:19877308..19877326,-#_2890ca93226d7691862801194b3a309dp@chr6:19877308..19877326, -
1.05e-79FFCP PHASE1:Hg19::chr6:19877308..19877326,-#_2890ca93226d7691862801194b3a309dp@chr6:19877308..19877326, -
1.56e-79FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_c15768462842d6c7591ae8de8a91bdbcp@chr17:19390211..19390223, +
1.56e-79FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_c15768462842d6c7591ae8de8a91bdbcp@chr15:35546024..35546035, -
1.56e-79FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_c15768462842d6c7591ae8de8a91bdbcp@chr15:35546024..35546035, -
1.56e-79FFCP PHASE1:Hg19::chr4:72101966..72101969,+#_c15768462842d6c7591ae8de8a91bdbcp21@SLC4A4
1.56e-79FFCP PHASE2:Hg19::chr4:72101966..72101969,+#_c15768462842d6c7591ae8de8a91bdbcp21@SLC4A4
1.56e-79FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_c15768462842d6c7591ae8de8a91bdbcp@chr17:19390211..19390223, +
2.34e-79FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_b09938184e66f19964900633fa8c2523p@chr20:9496091..9496106, +
2.34e-79FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_b09938184e66f19964900633fa8c2523p2@BC051739
2.34e-79FFCP PHASE2:Hg19::chr12:117513131..117513155,-#_b09938184e66f19964900633fa8c2523p@chr12:117513131..117513155, -
2.34e-79FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_b09938184e66f19964900633fa8c2523p@chr2:3853961..3853984, +
2.34e-79FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_b09938184e66f19964900633fa8c2523p@chr2:3853961..3853984, +
2.34e-79FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_b09938184e66f19964900633fa8c2523p2@BC051739
2.34e-79FFCP PHASE1:Hg19::chr12:117513131..117513155,-#_b09938184e66f19964900633fa8c2523p@chr12:117513131..117513155, -
2.34e-79FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_b09938184e66f19964900633fa8c2523p@chr20:9496091..9496106, +
3.49e-79FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr8:57353666..57353675, -
3.49e-79FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr10:97261874..97261887, -
3.49e-79FFCP PHASE1:Hg19::chr1:177134234..177134239,-#_739326bfa73f8a55bd3c1d845ca4f9a2p14@ASTN1
3.49e-79FFCP PHASE2:Hg19::chr1:177134234..177134239,-#_739326bfa73f8a55bd3c1d845ca4f9a2p14@ASTN1
3.49e-79FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr10:97261874..97261887, -
3.49e-79FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_739326bfa73f8a55bd3c1d845ca4f9a2p23@KCNAB1
3.49e-79FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_739326bfa73f8a55bd3c1d845ca4f9a2p23@KCNAB1
3.49e-79FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_739326bfa73f8a55bd3c1d845ca4f9a2+, p@chr3:57807798..57807809
3.49e-79FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr8:57353666..57353675, -
3.49e-79FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_739326bfa73f8a55bd3c1d845ca4f9a2p@chr3:57807798..57807809, +
5.22e-79FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_fa3c1c9659e861d59858c45221486eaap6@SYNDIG1L
5.22e-79FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_fa3c1c9659e861d59858c45221486eaap6@SYNDIG1L
1.16e-78FFCP PHASE1:Hg19::chr4:16728994..16729009,+#_0f0e284cfaeb6d45f4604fc11f3d688ap@chr4:16728994..16729009, +
1.16e-78FFCP PHASE2:Hg19::chr4:16728994..16729009,+#_0f0e284cfaeb6d45f4604fc11f3d688ap@chr4:16728994..16729009, +
7.41e-67FFCP PHASE2:Hg19::chr7:111424575..111424587,-#_e30f76b3f8c67a3ab5725ecdac8f4f8bp9@DOCK4
7.41e-67FFCP PHASE2:Hg19::chr4:135557487..135557500,-#_e30f76b3f8c67a3ab5725ecdac8f4f8bp@chr4:135557487..135557500, -
7.41e-67FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_e30f76b3f8c67a3ab5725ecdac8f4f8b-, p@chr8:57353676..57353688
7.41e-67FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_e30f76b3f8c67a3ab5725ecdac8f4f8bp@chr8:57353676..57353688, -
7.41e-67FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_e30f76b3f8c67a3ab5725ecdac8f4f8bp1@LINC00523
7.41e-67FFCP PHASE1:Hg19::chr7:111424575..111424587,-#_e30f76b3f8c67a3ab5725ecdac8f4f8bp9@DOCK4
7.41e-67FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_e30f76b3f8c67a3ab5725ecdac8f4f8bp8@CADM2
7.41e-67FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_e30f76b3f8c67a3ab5725ecdac8f4f8bp8@CADM2