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UBERON:0001890

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Name:forebrain
Namespace:FANTOM
Definition:"The most anterior region the brain including both the telencephalon and diencephalon." [Wikipedia:Forebrain, ZFIN:ZDB-PUB-961014-576]
Xrefs:
links:

AAO:0010147
BTO:0000478
EFO:0000909
EHDAA2:0000556
EHDAA:3470
EMAPA:16895
FMA:61992
[ 200px-EmbryonicBrain.svg.png 200px-EmbryonicBrain.svg.png]
MA:0000170
MAT:0000105
MESH:A.08.186.211.730
MIAA:0000105
ncithesaurus:Fore-Brain
ncithesaurus:Prosencephalon
NIF_GrossAnatomy:birnlex_1509
SCTID:362291003
TAO:0000109
VHOG:0000383
XAO:0000011

ZFA:0000109
Synonyms: "prosencephalon" RELATED []
Alt_id: UBERON:FMA_61992-MA_0000170-MIAA_0000105-XAO_0000011-ZFA_0000109
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002616(regional part of brain)
develops_from:UBERON:0003080(anterior neural tube)
part_of:UBERON:0000955(brain)



Children

part of:UBERON:0000349 (limbic system),UBERON:0001893 (telencephalon),UBERON:0001894 (diencephalon),UBERON:0002743 (basal forebrain),UBERON:0002780 (regional part of forebrain),CL:0012000 (astrocyte of the forebrain),CL:0012001 (neuron of the forebrain)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001890 (forebrain), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.11e-141FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_94cd2af3fd8ff13070818ea469ec6d6fp@chr5:89977201..89977236, +
6.11e-141FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_94cd2af3fd8ff13070818ea469ec6d6fp@chr5:89977201..89977236, +
2.38e-133FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_5179aa79c58bb22cf09b237550ddeb84p5@ST8SIA3
2.38e-133FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_5179aa79c58bb22cf09b237550ddeb84p5@ST8SIA3
6.8e-130FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_4543763bc1f50216d743b17a1a5467ebp5@PHACTR1
6.8e-130FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_4543763bc1f50216d743b17a1a5467ebp5@PHACTR1
2.27e-128FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_f1d7b0f716b259f23c854703f5c1749dp3@PHACTR1
2.27e-128FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_f1d7b0f716b259f23c854703f5c1749dp3@PHACTR1
6.39e-128FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_126d169843e22e2b0ffdb27d4a503619p6@PSD
6.39e-128FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_126d169843e22e2b0ffdb27d4a503619p6@PSD
7.77e-125FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_8a1f58d59e3ee0f642acb97c6d76a22dp@chr20:61806320..61806344, +
7.77e-125FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_8a1f58d59e3ee0f642acb97c6d76a22dp@chr20:61806320..61806344, +
3.82e-123FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_a06d906e2df5184083362ed310a554b7p2@FXYD7
3.82e-123FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_a06d906e2df5184083362ed310a554b7p2@FXYD7
1.09e-121FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_f5a877c65af8112c29624310cdce1247p1@NR2E1
1.09e-121FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_f5a877c65af8112c29624310cdce1247p1@NR2E1
2.87e-118FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_b2d8ab7d57eb2467d591f172d3db2854p5@OPCML
2.87e-118FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_b2d8ab7d57eb2467d591f172d3db2854p5@OPCML
7.25e-118FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_c899bb3ccc00de687e8e0128314cac95p4@DPP6
7.25e-118FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_c899bb3ccc00de687e8e0128314cac95p4@DPP6
8.87e-118FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_e3e01c6143bf3662e17f99be47dffcadp9@GPM6B
8.87e-118FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_e3e01c6143bf3662e17f99be47dffcadp9@GPM6B
1.66e-117FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_c9c936c6544958c3e44c1f974d3a4ae0p@chr4:6514469..6514483, -
1.66e-117FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_c9c936c6544958c3e44c1f974d3a4ae0p@chr4:6514469..6514483, -
2.75e-117FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_17d4fdd5db55b09b88d7912784db153ap3@GRIN2B
2.75e-117FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_17d4fdd5db55b09b88d7912784db153ap3@GRIN2B
2.82e-116FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_108ee19174f3164e68b547a19c2ff1dfp4@PHACTR1
2.82e-116FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_108ee19174f3164e68b547a19c2ff1dfp4@PHACTR1
2.93e-116FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_9c8cd4f547f775eb9a54a14b41d85764p8@RIMS2
2.93e-116FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_9c8cd4f547f775eb9a54a14b41d85764p8@RIMS2
5.58e-116FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_b31b9625b83bcbb6468d3e57562352cap8@LRRC7
5.58e-116FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_b31b9625b83bcbb6468d3e57562352cap8@LRRC7
6.52e-116FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_ced2266ed38ac546f0dec71ca7d2afcbp4@DLGAP3
6.52e-116FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_ced2266ed38ac546f0dec71ca7d2afcbp4@DLGAP3
6.61e-116FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_fa9942a876f8e490311ef5f5d39c56f0p8@PHACTR1
6.61e-116FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_fa9942a876f8e490311ef5f5d39c56f0p8@PHACTR1
5.28e-115FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_7a446cb699bf77de2f5d4d25126f9424p3@DOCK4
5.28e-115FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_7a446cb699bf77de2f5d4d25126f9424p3@DOCK4
5.97e-115FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_0baaf265f75f8e1c98a0c25ad92be58ep3@GPR98
5.97e-115FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_0baaf265f75f8e1c98a0c25ad92be58ep3@GPR98
1.02e-114FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_4acb237037472e4b2b6136ca21c6343ap2@DLGAP3
1.02e-114FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_4acb237037472e4b2b6136ca21c6343ap2@DLGAP3
1.06e-114FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_20e69dd2bfc329bff1a4076c5d68ccccp5@MKL2
1.06e-114FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_20e69dd2bfc329bff1a4076c5d68ccccp5@MKL2
8.42e-114FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_56a4aa966986522fdab1987de040c0dcp1@uc003ppd.1
8.42e-114FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_56a4aa966986522fdab1987de040c0dcp1@uc003ppd.1
3.53e-113FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_5680f39f2b76d0d03f515ae073dd9ef0p@chr1:70035018..70035044, +
3.53e-113FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_5680f39f2b76d0d03f515ae073dd9ef0p@chr1:70035018..70035044, +
5.22e-113FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_e2ccbe849602839002dcf31307da66e3p6@GABRA2
5.22e-113FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_e2ccbe849602839002dcf31307da66e3p6@GABRA2
5.23e-113FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_75c515cc2d90e7cd15c05316145389e8p6@CIT
5.23e-113FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_75c515cc2d90e7cd15c05316145389e8p6@CIT
1.08e-112FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_ff8f0888f30f5c1bce442c8bd42fcdd3p2@LMTK3
1.08e-112FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_ff8f0888f30f5c1bce442c8bd42fcdd3p2@LMTK3
1.26e-112FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_1d320c017f26f0b9021cabb7956894c7p10@GPM6B
1.26e-112FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_1d320c017f26f0b9021cabb7956894c7p10@GPM6B
1.39e-112FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_a12b9152f9acabcb2361914bf5c2a9aap@chr5:80255907..80255942, +
1.39e-112FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_a12b9152f9acabcb2361914bf5c2a9aap@chr5:80255907..80255942, +
1.42e-112FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_a2eee95743da5fc9441d554c87295542p@chr17:61194578..61194599, +
1.42e-112FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_a2eee95743da5fc9441d554c87295542p@chr17:61194578..61194599, +
1.66e-112FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_1b7b461f360e8fbd581304617f1626e8p@chr5:89977181..89977199, +
1.66e-112FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_1b7b461f360e8fbd581304617f1626e8p@chr5:89977181..89977199, +
6.89e-112FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_053028ba11e81f2bf62e41e830dec087p1@ENST00000417881
6.89e-112FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_053028ba11e81f2bf62e41e830dec087p1@ENST00000417881
7.85e-112FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_42cdff334b3b0591d0ee33c5bf787cb5p6@DPP6
7.85e-112FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_42cdff334b3b0591d0ee33c5bf787cb5p6@DPP6
1.02e-111FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_4634d65504b62a95ff9e43e8e4d9fa28p2@CDH9
1.02e-111FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_4634d65504b62a95ff9e43e8e4d9fa28p2@CDH9
1.42e-111FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_d66ba86d8b01aaa7090ae9bc151ebdc4p@chr2:3134361..3134374, -
1.42e-111FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_d66ba86d8b01aaa7090ae9bc151ebdc4p@chr2:3134361..3134374, -
1.94e-111FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_366de2ebf1779ee817f258896664cb30p3@TIAM2
1.94e-111FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_366de2ebf1779ee817f258896664cb30p3@TIAM2
3.18e-111FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_756ce8f16ed31abbb4008f5376b8474cp1@KALRN
3.18e-111FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_756ce8f16ed31abbb4008f5376b8474cp1@KALRN
4.18e-111FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_1880b318aaec5246890595f3aba3dacap4@ASTN1
4.18e-111FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_1880b318aaec5246890595f3aba3dacap4@ASTN1
5.69e-111FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_43507fb9fd41a656ceb98067e309685ap@chr11:132982177..132982181, -
5.69e-111FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_43507fb9fd41a656ceb98067e309685ap@chr11:132982177..132982181, -
7.54e-111FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_c507736394ce9a811d3275aae70297b3p5@NKAIN3
7.54e-111FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_c507736394ce9a811d3275aae70297b3p5@NKAIN3
1.27e-110FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_91c7bf141eaeef6badb0de1bab0c0061p9@ANKS1B
1.27e-110FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_91c7bf141eaeef6badb0de1bab0c0061p9@ANKS1B
1.38e-110FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_8adfb93598208a709fe9569bbe832849p3@ARNT2
1.38e-110FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_8adfb93598208a709fe9569bbe832849p3@ARNT2
2.12e-110FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_7fa1b54933033dbe7535ad27d4a42130p@chr20:1791316..1791339, -
2.12e-110FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_7fa1b54933033dbe7535ad27d4a42130-, p@chr20:1791316..1791339
2.27e-110FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_a07095518d3e2d5fc2f459c7abff4bbdp14@PALM2-AKAP2
2.27e-110FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_a07095518d3e2d5fc2f459c7abff4bbdp14@PALM2-AKAP2
3.45e-110FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_4b201cb5dcee30786f9749ee7860da76p6@GPM6B
3.45e-110FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_4b201cb5dcee30786f9749ee7860da76p6@GPM6B
4.23e-110FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_8428790c292dc7dc894035ccaea79d11p1@ENST00000412957
4.23e-110FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_8428790c292dc7dc894035ccaea79d11p1@ENST00000412957
5.12e-110FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_426cb6c23d50ac983c41943e9051080ap7@ANKS1B
5.12e-110FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_426cb6c23d50ac983c41943e9051080ap7@ANKS1B
7.19e-110FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_1887cfc1535600c68e705bfa82937df1p@chr20:1791288..1791304, -
7.19e-110FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_1887cfc1535600c68e705bfa82937df1p@chr20:1791288..1791304, -
9.49e-110FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_43a3c02d5372ddb5352ba1ad52fa26b2p@chr21:43917145..43917190, -
9.49e-110FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_43a3c02d5372ddb5352ba1ad52fa26b2p@chr21:43917145..43917190, -
1.01e-109FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_38f79f7871dbed7edd1cd3dd2edea05cp2@TIAM2
1.01e-109FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_38f79f7871dbed7edd1cd3dd2edea05cp2@TIAM2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Most anterior of the three regions of the brain consisting of the telencephalon and diencephalon.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: develops_from forebrain neural tube (TAO:0007041)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.


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